Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1078
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeri...    58   3e-09
AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, ga...    58   3e-09
Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical pr...    40   9e-04
AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeri...    40   9e-04
U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    29   2.8  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z92825-3|CAB07311.1|  531|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 2 protein.
          Length = 62

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 24/63 (38%), Positives = 43/63 (68%)
 Frame = +3

Query: 3   DKEALKKQIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKC 182
           DK  +++ +++++ Q +++R P++ S A +R + E  E  DPL++  DKK NPWAEK KC
Sbjct: 2   DKSDMQRTVDSLRSQLNIERTPITVSAAELRRFTESQE--DPLVNPIDKKVNPWAEKSKC 59

Query: 183 IIM 191
            ++
Sbjct: 60  SML 62


>AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, gamma
           subunit protein 2 protein.
          Length = 62

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 24/63 (38%), Positives = 43/63 (68%)
 Frame = +3

Query: 3   DKEALKKQIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKC 182
           DK  +++ +++++ Q +++R P++ S A +R + E  E  DPL++  DKK NPWAEK KC
Sbjct: 2   DKSDMQRTVDSLRSQLNIERTPITVSAAELRRFTESQE--DPLVNPIDKKVNPWAEKSKC 59

Query: 183 IIM 191
            ++
Sbjct: 60  SML 62


>Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical
           protein K02A4.2 protein.
          Length = 62

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = +3

Query: 9   EALKKQIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCII 188
           E +K   E +  +A++ R  +S     + ++ E+N+ ND L+  P  ++NP+ EK  C +
Sbjct: 2   ENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQHNPFQEKKSCSV 61

Query: 189 M 191
           +
Sbjct: 62  L 62


>AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 1 protein.
          Length = 62

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = +3

Query: 9   EALKKQIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCII 188
           E +K   E +  +A++ R  +S     + ++ E+N+ ND L+  P  ++NP+ EK  C +
Sbjct: 2   ENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQHNPFQEKKSCSV 61

Query: 189 M 191
           +
Sbjct: 62  L 62


>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 194 LHNNAFSFLGPRVVLFVRSVYQGVVLFILFDVLPHR 87
           L+ N FS    ++V+F+  ++   VL I F + P R
Sbjct: 110 LYKNVFSSKWTKLVIFISFIFSTTVLTIFFQIYPCR 145


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 18  KKQIENMKYQASMDRWPLSRSIAAMREYVEENEK 119
           K  + NM+ +A    W    S+ AM+EY E + K
Sbjct: 405 KDDLNNMRTEAEFATWKSRGSLKAMKEYFEGHRK 438


>Z92825-3|CAB07311.1|  531|Caenorhabditis elegans Hypothetical
           protein C13C4.5 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -3

Query: 166 AQGLFFLSGACIRGSFFSFSSTYSLIAAMLLDSGQRSIEAWYFMFSICFFSAS 8
           A G+ F+   CI  S F++++   L+ ++++   + S  +W  + S  F  AS
Sbjct: 388 AWGMLFI---CIVASSFNWATNVDLLLSVVVPQRRSSASSWQILISHMFGDAS 437


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,817,665
Number of Sequences: 27780
Number of extensions: 172084
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)