Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1078
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    25   0.49 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    25   0.49 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    25   0.49 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    25   0.65 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    25   0.65 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.1  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 147 CPERVSGGRSFHSLRRTPSSLRCS 76
           CP+ +S G S H L  T S  R S
Sbjct: 65  CPDVMSAGESKHGLTNTASHTRLS 88


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 147 CPERVSGGRSFHSLRRTPSSLRCS 76
           CP+ +S G S H L  T S  R S
Sbjct: 70  CPDVMSAGESKHGLTNTASHTRLS 93


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 147 CPERVSGGRSFHSLRRTPSSLRCS 76
           CP+ +S G S H L  T S  R S
Sbjct: 70  CPDVMSAGESKHGLTNTASHTRLS 93


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 NLRAILKKKSGKMQRLGILSIAQGL 339
           N RA +KK SG+   L +  +AQGL
Sbjct: 70  NKRAKIKKASGQKNPLALQLMAQGL 94


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 NLRAILKKKSGKMQRLGILSIAQGL 339
           N RA +KK SG+   L +  +AQGL
Sbjct: 70  NKRAKIKKASGQKNPLALQLMAQGL 94


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 74  QEHRSDEGVRR-RE*KERPPDTRSGQKEQPLGRERKMHYYVN 196
           +E+R D    +    KE+  + R+ +K     RER+ + Y N
Sbjct: 10  REYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKN 51


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 74  QEHRSDEGVRR-RE*KERPPDTRSGQKEQPLGRERKMHYYVN 196
           +E+R D    +    KE+  + R+ +K     RER+ + Y N
Sbjct: 10  REYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKN 51


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 59  VHRSLVLHVFNLLLQCFFV 3
           + R  + +VFNL+L C  +
Sbjct: 209 LRRRPMFYVFNLILPCILI 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,765
Number of Sequences: 438
Number of extensions: 2290
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)