Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1078
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26590.1 68416.m03319 MATE efflux family protein similar to r...    28   3.5  
At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5) i...    27   6.1  
At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5) i...    27   6.1  
At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1) domain...    27   8.0  
At4g23160.1 68417.m03342 protein kinase family protein contains ...    27   8.0  

>At3g26590.1 68416.m03319 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 500

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 166 AQGLFFLSGACIRG----SFFSFSSTYSLIAAMLLDSGQRSIEAWYFMFSICF 20
           AQ ++  SG C       S+ +F + +S +   L  +    +E WYFM  I F
Sbjct: 241 AQLVYIFSGTCGEAWSGFSWEAFHNLWSFVRLSLASAVMLCLEVWYFMAIILF 293


>At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 680

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 193 YIIMHFPFSAQGLFFLSGACIRGSFFSFSSTYSLIAAMLLDS 68
           ++   F  SAQ  F+L+  C   + +S +STYS     LL S
Sbjct: 15  FLTSSFTASAQDPFYLNHYCPNTTTYSSNSTYSTNLRTLLSS 56


>At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 674

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 193 YIIMHFPFSAQGLFFLSGACIRGSFFSFSSTYSLIAAMLLDS 68
           ++   F  SAQ  F+L+  C   + +S +STYS     LL S
Sbjct: 15  FLTSSFTASAQDPFYLNHYCPNTTTYSSNSTYSTNLRTLLSS 56


>At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein contains Pfam profiles PF00564:
           PB1 domain, PF00515: TPR Domain
          Length = 809

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 102 VEENEKNDPLIHAPDKKNNPWAEKGK 179
           VEE  + +     P+KKNN  AEKGK
Sbjct: 294 VEEKSEGEGEDVEPEKKNNVLAEKGK 319


>At4g23160.1 68417.m03342 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 1262

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 178 FPFSAQGLFFLSGACIRGSFFSFSSTYSLIAAMLLDS 68
           F  SAQ  F+L+  C   + +S +STYS     LL S
Sbjct: 616 FKASAQNPFYLNHDCPNRTTYSSNSTYSTNLKTLLSS 652


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,011,863
Number of Sequences: 28952
Number of extensions: 149652
Number of successful extensions: 349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)