BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1076 (666 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 94 2e-20 SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar... 36 0.005 SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.20 SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 1.8 SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 7.4 SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 7.4 SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 7.4 SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 9.8 >SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosaccharomyces pombe|chr 1|||Manual Length = 222 Score = 93.9 bits (223), Expect = 2e-20 Identities = 57/174 (32%), Positives = 81/174 (46%) Frame = +3 Query: 144 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLT 323 TT + I + +E L KK+E LE++I + + ARK+ T N +E +L Sbjct: 16 TTKDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELV 75 Query: 324 QIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHD 503 +I+G+ IE Q +++ AN N + L MR+ A AMK + +D DKV IMD I +Q Sbjct: 76 KIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQT 135 Query: 504 ISREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVP 665 IS EI+ IS V +I MLG P P VP Sbjct: 136 ISEEISTMISTPVGLNAEIDEDELANELDELQQMELDSKMLGAEKPPVHTPAVP 189 >SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 35.9 bits (79), Expect = 0.005 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 1/131 (0%) Frame = +3 Query: 156 AIQKLRETEELLIKKQEFLEKKIDLEVQTARK-HGTKNXXXXXXXXXXXXXYEKQLTQID 332 +I ++E + L++ + LEK LE+ ARK + Y +TQ Sbjct: 14 SILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTY 73 Query: 333 GTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISR 512 G L IE +E V+ ++E N ++ D+ +++V I +D E Sbjct: 74 GQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVD 133 Query: 513 EITEAISNNVA 545 E+ + + ++ Sbjct: 134 EVNDMLQGRMS 144 >SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual Length = 1957 Score = 30.7 bits (66), Expect = 0.20 Identities = 20/82 (24%), Positives = 39/82 (47%) Frame = +3 Query: 165 KLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLTQIDGTLT 344 KL E+ + LIKKQE ++ ++ +QT ++ K+ + + + G Sbjct: 669 KLEESNKSLIKKQEDVD-SLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHE 727 Query: 345 QIEAQREALEGANTNAQVLNTM 410 +EAQR L + ++A+ N + Sbjct: 728 TLEAQRNDLHSSLSDAKNTNAI 749 >SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1639 Score = 27.5 bits (58), Expect = 1.8 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 Query: 203 RVFGKEDRFRSTDSQETWH*EQKSC 277 + F E RFRSTD WH + C Sbjct: 927 KTFAAEIRFRSTDGHYRWHLVKSVC 951 >SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1402 Score = 25.4 bits (53), Expect = 7.4 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +3 Query: 171 RETEELLIKKQEFLEK-KIDLEVQTARKHGTK 263 ++TEEL ++KQ F+E+ ++ + Q H K Sbjct: 608 KDTEELTLQKQSFIERDRMQMISQMRNMHDNK 639 >SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 1052 Score = 25.4 bits (53), Expect = 7.4 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Frame = +3 Query: 459 DKVHDIMDDIAEQHDISREI----TEAISNNVAFPNDI 560 DKV +++D+ E DIS++I T A+ + V N I Sbjct: 874 DKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSI 911 >SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizosaccharomyces pombe|chr 2|||Manual Length = 932 Score = 25.4 bits (53), Expect = 7.4 Identities = 21/75 (28%), Positives = 31/75 (41%) Frame = +3 Query: 306 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 485 YE+ ++ + AQR LE A L T REA A + A K K + Sbjct: 546 YERAQAGVEQERKAVIAQRSLLELRRGQADTLATQREAELAAQRALK----QKQESEAES 601 Query: 486 IAEQHDISREITEAI 530 + Q +I++ E I Sbjct: 602 LRVQEEINKRNAERI 616 >SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 544 Score = 25.0 bits (52), Expect = 9.8 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%) Frame = +3 Query: 153 EAIQKLRETEELLIKKQEFLEK----KIDLEVQTARK 251 E +KLRE E++ KK + LEK +I L+ Q RK Sbjct: 108 EQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRK 144 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,370,268 Number of Sequences: 5004 Number of extensions: 44564 Number of successful extensions: 147 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 147 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 303841898 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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