Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1076
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    94   2e-20
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    36   0.005
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   0.20 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   1.8  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   7.4  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.4  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   7.4  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.8  

>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 57/174 (32%), Positives = 81/174 (46%)
 Frame = +3

Query: 144 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLT 323
           TT + I + +E   L  KK+E LE++I  + + ARK+ T N             +E +L 
Sbjct: 16  TTKDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELV 75

Query: 324 QIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHD 503
           +I+G+   IE Q  +++ AN N + L  MR+ A AMK   + +D DKV  IMD I +Q  
Sbjct: 76  KIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQT 135

Query: 504 ISREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVP 665
           IS EI+  IS  V    +I                    MLG   P    P VP
Sbjct: 136 ISEEISTMISTPVGLNAEIDEDELANELDELQQMELDSKMLGAEKPPVHTPAVP 189


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
 Frame = +3

Query: 156 AIQKLRETEELLIKKQEFLEKKIDLEVQTARK-HGTKNXXXXXXXXXXXXXYEKQLTQID 332
           +I  ++E  + L++  + LEK   LE+  ARK     +             Y   +TQ  
Sbjct: 14  SILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTY 73

Query: 333 GTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISR 512
           G L  IE     +E       V+  ++E  N ++    D+ +++V  I +D  E      
Sbjct: 74  GQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVD 133

Query: 513 EITEAISNNVA 545
           E+ + +   ++
Sbjct: 134 EVNDMLQGRMS 144


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +3

Query: 165 KLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLTQIDGTLT 344
           KL E+ + LIKKQE ++  ++  +QT ++   K+               + +  + G   
Sbjct: 669 KLEESNKSLIKKQEDVD-SLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHE 727

Query: 345 QIEAQREALEGANTNAQVLNTM 410
            +EAQR  L  + ++A+  N +
Sbjct: 728 TLEAQRNDLHSSLSDAKNTNAI 749


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 203  RVFGKEDRFRSTDSQETWH*EQKSC 277
            + F  E RFRSTD    WH  +  C
Sbjct: 927  KTFAAEIRFRSTDGHYRWHLVKSVC 951


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 171 RETEELLIKKQEFLEK-KIDLEVQTARKHGTK 263
           ++TEEL ++KQ F+E+ ++ +  Q    H  K
Sbjct: 608 KDTEELTLQKQSFIERDRMQMISQMRNMHDNK 639


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +3

Query: 459 DKVHDIMDDIAEQHDISREI----TEAISNNVAFPNDI 560
           DKV +++D+  E  DIS++I    T A+ + V   N I
Sbjct: 874 DKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSI 911


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +3

Query: 306 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 485
           YE+    ++     + AQR  LE     A  L T REA  A + A K     K     + 
Sbjct: 546 YERAQAGVEQERKAVIAQRSLLELRRGQADTLATQREAELAAQRALK----QKQESEAES 601

Query: 486 IAEQHDISREITEAI 530
           +  Q +I++   E I
Sbjct: 602 LRVQEEINKRNAERI 616


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +3

Query: 153 EAIQKLRETEELLIKKQEFLEK----KIDLEVQTARK 251
           E  +KLRE E++  KK + LEK    +I L+ Q  RK
Sbjct: 108 EQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRK 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,268
Number of Sequences: 5004
Number of extensions: 44564
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)