Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1076
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0717 + 23834965-23835051,23836760-23836859,23837685-238377...    75   7e-14
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504...    69   3e-12
11_01_0130 - 1079515-1079685,1079847-1079961,1080237-1080328,108...    62   4e-10
12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101...    61   9e-10
01_01_0022 - 170045-170095,170406-170554,170764-170875,171398-17...    44   1e-04
05_01_0020 + 143273-143592,144278-144371,144466-144537,144675-14...    39   0.003
05_01_0488 - 4070506-4072277,4072455-4072557                           31   1.1  
02_05_0794 + 31789186-31789330,31789613-31789755                       29   3.3  
07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371     28   5.8  

>06_03_0717 +
           23834965-23835051,23836760-23836859,23837685-23837770,
           23837867-23837958,23838659-23838773,23838847-23839029
          Length = 220

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
 Frame = +3

Query: 144 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHG-TKNXXXXXXXXXXXXXYEKQL 320
           T   +I KL ET E+L KK+  L KK +LEV+ A+     KN             YE+Q+
Sbjct: 19  TALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKNKRAAIQCLKRKRLYEQQI 78

Query: 321 TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQH 500
            Q+     +I  Q   LEGA    + ++ +R  A+AMK  HK  ++D V   MD+I +  
Sbjct: 79  EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATNIDDVDKTMDEINDNM 138

Query: 501 DISREITEAIS 533
           +  R+I + +S
Sbjct: 139 ENMRQIQDLLS 149


>09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,
            5043954-5044058,5044726-5044791,5044882-5044999,
            5045018-5045103,5045900-5046424,5046534-5047115,
            5047203-5047385,5049326-5049392,5049685-5049791,
            5049977-5050076,5050228-5050313,5050394-5050485,
            5050591-5050705,5050792-5050983
          Length = 984

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
 Frame = +3

Query: 159  IQKLRETEELLIKKQEFLEKKIDLEVQTARKHG-TKNXXXXXXXXXXXXXYEKQLTQIDG 335
            + KL ET ++L KK++ LEKK   E++ A++    KN             YE+Q+ Q+  
Sbjct: 785  LDKLNETLDMLEKKEKVLEKKAAAELERAKEFSKAKNKRAAIQSLKRKKLYEQQIEQLGN 844

Query: 336  TLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISRE 515
               +I  Q   LE A    + ++ +R  A AMK   K  ++D V   MD+I EQ +  ++
Sbjct: 845  FQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATNIDDVDKTMDEINEQTENMKQ 904

Query: 516  ITEAIS 533
            I +A+S
Sbjct: 905  IQDALS 910


>11_01_0130 -
           1079515-1079685,1079847-1079961,1080237-1080328,
           1080435-1080520,1080957-1081056,1082180-1082210,
           1082416-1082471
          Length = 216

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
 Frame = +3

Query: 174 ETEELLIKKQEFLEKKIDLEVQTARKH-GTKNXXXXXXXXXXXXXYEKQLTQIDGTLTQI 350
           ET E+L KK+ FL+KK   EV+ A+ +   KN             YE Q+ Q+     ++
Sbjct: 29  ETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQCLKKKKLYETQIEQLANFQLRV 88

Query: 351 EAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISREITEAI 530
             Q   LE A      ++ +R  ++A+K  H+ + +D + + +++  E  +  R+I EA+
Sbjct: 89  HDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENMRQIQEAL 148

Query: 531 SNNVAFPND 557
           +  +    D
Sbjct: 149 ATPIGASAD 157


>12_01_0133 -
           1011442-1011609,1011792-1011906,1012188-1012279,
           1012384-1012469,1012989-1013088,1014139-1014333
          Length = 251

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
 Frame = +3

Query: 174 ETEELLIKKQEFLEKKIDLEVQTARKH-GTKNXXXXXXXXXXXXXYEKQLTQIDGTLTQI 350
           +T E+L KK+ FL+KK   EV+ A+ +   KN             YE Q+ Q+     ++
Sbjct: 65  QTLEMLEKKECFLQKKASAEVERAKDYTKAKNKSAAIQCLKKKKLYETQIEQLANFQLRV 124

Query: 351 EAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISREITEAI 530
             Q   LE A      ++ +R  ++A+K  H+ + +D + + +++  E  +  R+I EA+
Sbjct: 125 HDQIIMLESAKATTDTVDALRSGSSAVKAIHQSVSIDDIENAIEEANEHTENMRQIQEAL 184

Query: 531 SNNVAFPND 557
           +  +    D
Sbjct: 185 ATPIGASAD 193


>01_01_0022 -
           170045-170095,170406-170554,170764-170875,171398-171469,
           171578-171671,171770-171921,172004-172072
          Length = 232

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 42/85 (49%)
 Frame = +3

Query: 306 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 485
           YE+Q   +      ++    A +G     Q +N M+ A   +K   K + ++ + ++ D+
Sbjct: 75  YEEQRNMLYNQTYNLDQVAFAADGLKDAQQTMNAMKAANKELKGMMKTVKIEDIDNMQDE 134

Query: 486 IAEQHDISREITEAISNNVAFPNDI 560
           + +  D+S EI E++  +   P+D+
Sbjct: 135 MTDLMDVSNEIQESLGRSYNIPDDV 159


>05_01_0020 +
           143273-143592,144278-144371,144466-144537,144675-144786,
           145179-145327,145484-145510,145931-145981
          Length = 274

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +3

Query: 306 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 485
           YE Q   +      ++    A EG     Q +  M+ A   +K   K + ++ +  + D+
Sbjct: 108 YEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMMKTVKLEDIDSLQDE 167

Query: 486 IAEQHDISREITEAISNNVAFPNDI 560
           + +  D+S EI E +  +   P+DI
Sbjct: 168 MMDLMDVSNEIQETLGRSYNVPDDI 192


>05_01_0488 - 4070506-4072277,4072455-4072557
          Length = 624

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
 Frame = +3

Query: 315 QLTQIDGTLTQIEAQREALEGAN-TNAQVLNTMREA-ANAMK-----LAHKDIDVDKVHD 473
           + + +   L ++++++EALE     N   ++ ++E+  +A K     LAH+D ++DK   
Sbjct: 229 ETSSLQKDLDEVKSEKEALEAVVLVNKDEIDRLKESMVSAAKQFEVELAHRDTEIDKCKQ 288

Query: 474 IMDDIAEQ--HDIS 509
            ++ ++E+  HDIS
Sbjct: 289 ELEVLSEKYLHDIS 302


>02_05_0794 + 31789186-31789330,31789613-31789755
          Length = 95

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 348 IEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVH 470
           +  +  AL+ +   A+ L ++R  +NA  LA + +D DK+H
Sbjct: 1   MSVETAALQLSGEKARALTSIRRYSNAPILAAQRLDTDKIH 41


>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
          Length = 185

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 452 NVFVCELHGISCLAHSVQY 396
           N+  CELH  SCL H++Q+
Sbjct: 163 NLPACELHHFSCLLHTMQH 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,273
Number of Sequences: 37544
Number of extensions: 286288
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)