Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1076
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)             158   4e-39
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)                       138   5e-33
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)                       138   5e-33
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     31   0.84 
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_33651| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7)                    29   3.4  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   5.9  

>SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score =  158 bits (383), Expect = 4e-39
 Identities = 86/175 (49%), Positives = 105/175 (60%)
 Frame = +3

Query: 141 PTTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQL 320
           PTT EAIQKLR TEELL KK +FLEKKI+ E+Q A+++ +KN              EKQL
Sbjct: 16  PTTQEAIQKLRSTEELLQKKSDFLEKKIENELQIAKQNASKNKRTALNALKRKKRLEKQL 75

Query: 321 TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQH 500
            QIDGTL+ IE QREALEGANTN +VL  M  AA A+K AH+ +DVD VHD+MDDI EQ 
Sbjct: 76  NQIDGTLSTIEFQREALEGANTNTEVLKNMSYAAKALKAAHQQLDVDDVHDMMDDIQEQT 135

Query: 501 DISREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVP 665
           +++ EI+ AIS    F  DI                    +L I   +  LP VP
Sbjct: 136 ELADEISRAISEPAGFGMDIDEDELNAELDELEQSEIDKQILDIGPTSTGLPSVP 190


>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score =  138 bits (333), Expect = 5e-33
 Identities = 74/173 (42%), Positives = 103/173 (59%)
 Frame = +3

Query: 147 THEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLTQ 326
           T +AI KLRETE+LL KKQE+LE++I++E  TA+ +  KN              EKQL+Q
Sbjct: 29  TQQAIWKLRETEKLLEKKQEYLEQRIEIETNTAKANVKKNKRIALQALKRKKRLEKQLSQ 88

Query: 327 IDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDI 506
           IDGTL+ IE QR+ALE ++TN +V+ +M  AANA+K  HK +D+D VHD+MDD+ EQ  +
Sbjct: 89  IDGTLSTIEFQRDALENSSTNTEVVKSMSFAANALKEVHKTLDIDDVHDVMDDVQEQAQL 148

Query: 507 SREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVP 665
           S EI++AI  N     DI                    ++ +  P   LP+VP
Sbjct: 149 SDEISQAI--NFVGSQDIDESDIMSELAELEQEVIDKELIQVKKPGPRLPNVP 199


>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score =  138 bits (333), Expect = 5e-33
 Identities = 74/173 (42%), Positives = 103/173 (59%)
 Frame = +3

Query: 147 THEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLTQ 326
           T +AI KLRETE+LL KKQE+LE++I++E  TA+ +  KN              EKQL+Q
Sbjct: 29  TQQAIWKLRETEKLLEKKQEYLEQRIEIETNTAKANVKKNKRIALQALKRKKRLEKQLSQ 88

Query: 327 IDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDI 506
           IDGTL+ IE QR+ALE ++TN +V+ +M  AANA+K  HK +D+D VHD+MDD+ EQ  +
Sbjct: 89  IDGTLSTIEFQRDALENSSTNTEVVKSMSFAANALKEVHKTLDIDDVHDVMDDVQEQAQL 148

Query: 507 SREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVP 665
           S EI++AI  N     DI                    ++ +  P   LP+VP
Sbjct: 149 SDEISQAI--NFVGSQDIDESDIMSELAELEQEVIDKELIQVKKPGPRLPNVP 199


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 22/103 (21%), Positives = 41/103 (39%)
 Frame = +3

Query: 141  PTTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQL 320
            P  +  ++ L+E  EL   + E L   +  E Q ++ + +                E+  
Sbjct: 3059 PHLNNTVEGLQEALELERSRAEDLNNALAGERQKSKLNASMEAEKQLREQTDRLVAEQLR 3118

Query: 321  TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKD 449
            + +DG   Q+     ALEG    A+ L   R+   A  + H++
Sbjct: 3119 SALDGVQKQLVDLTGALEGERHRARKLQNERDVQQATAMGHRE 3161


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
 Frame = +3

Query: 153  EAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLTQID 332
            E I+KL E EE  I   E +EKK+++    A   G K               E Q  Q  
Sbjct: 1805 ERIKKLIELEEKAI---ETMEKKLEIAEYAA---GLKYKKESLEKKCAELSAEIQNLQQS 1858

Query: 333  GTLTQIEAQR---EALEGANTNAQVLNTMREAANAMKLAHKDIDVDKV 467
              +T  +  R   E  +   TNA+    + E  NA+++  +DI+V KV
Sbjct: 1859 RDVTAADKSRINDEVCQLKLTNAKTEADLAETRNALRIEKQDIEVLKV 1906


>SB_33651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 339 LTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDI-DVDKVHDIMDDIAEQHDISRE 515
           LT+I    + L   + N+Q L  + +++  +   HK+  ++ ++H    ++   H  S+E
Sbjct: 117 LTRIHKNSQELTRIHKNSQELTRIHKSSQELTRIHKNSQELTRIHKNSQELTRIHKNSQE 176

Query: 516 ITEAISNN 539
           +T    N+
Sbjct: 177 LTRIHKNS 184


>SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7)
          Length = 205

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 256 PCFLAVCTSKSIFFSKNSCFLISNSSVSRSFWIASC 149
           PCF     S S+ F   SCF  +  S S  F + SC
Sbjct: 106 PCFRFARVSGSLVFQVRSCFRFARVSGSLVFQVRSC 141



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 256 PCFLAVCTSKSIFFSKNSCFLISNSSVSRSFWIASC 149
           PCF     S S+ F   SCF  +  S S  F + SC
Sbjct: 157 PCFRFARVSGSLVFQVRSCFRFARVSGSLVFQVRSC 192


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +3

Query: 324  QIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHD 503
            Q+ G    +E   +  E      + ++T+ + A+  KL+    DV+ +   MDD+ E   
Sbjct: 4053 QVQGLEAAVEQMGKLQESLKNTDEAISTVEKKAD--KLSPVGTDVETIEQQMDDLKELQK 4110

Query: 504  ISREITEAISN 536
               +I E I++
Sbjct: 4111 EVEDIDELIAD 4121


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +3

Query: 318 LTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQ 497
           L + +     +E + + L   NTN +      + A     A  D + D+V+ +  +I   
Sbjct: 465 LEKSENARDDLEREVDGLRSKNTNLEAQLAAAQKAKMQLKADLDAEKDRVNQLRKEIV-- 522

Query: 498 HDISREITEAISNNVAFPND 557
             +  +++EA  N   F ND
Sbjct: 523 -GLQAQLSEAQRNAEKFKND 541


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,865,162
Number of Sequences: 59808
Number of extensions: 333441
Number of successful extensions: 845
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)