Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1076
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical pr... 160 9e-40
U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical p... 142 2e-34
U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical pr... 118 4e-27
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 49 3e-06
Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical ... 28 5.2
Z81477-3|CAB03929.2| 316|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z68880-4|CAA93093.1| 544|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL022288-3|CAA18364.1| 173|Caenorhabditis elegans Hypothetical ... 27 9.1
AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormo... 27 9.1
AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical ... 27 9.1
>U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical
protein C56C10.3 protein.
Length = 221
Score = 160 bits (388), Expect = 9e-40
Identities = 84/174 (48%), Positives = 105/174 (60%)
Frame = +3
Query: 144 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLT 323
T E+IQKLRETEE+L KKQEFLEKK+ E Q A K+GTKN +EKQL
Sbjct: 18 TPQESIQKLRETEEMLEKKQEFLEKKVIDEKQNAVKYGTKNKRMALQCLNRKRNFEKQLA 77
Query: 324 QIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHD 503
IDG L+ I QREALE A+TNA+VLN M A+ A+K AH ++D+D+VHD+M+DIAEQ +
Sbjct: 78 HIDGVLSTIGYQREALENASTNAEVLNVMGTASKALKAAHNNMDIDQVHDLMEDIAEQQE 137
Query: 504 ISREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVP 665
++ EI EAISN V F + +L P TLPD P
Sbjct: 138 VANEIAEAISNPVGFSTAVDDDDLMRELEALEQEELDKELLDARAPPVTLPDTP 191
>U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical
protein C37C3.3 protein.
Length = 265
Score = 142 bits (345), Expect = 2e-34
Identities = 79/175 (45%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
Frame = +3
Query: 144 TTHEAIQKLRETEELLIKKQEFLEKKID-LEVQTARKHGTKNXXXXXXXXXXXXXYEKQL 320
T E+IQKLRETE++L KKQEFLEKKID + Q A K+GTKN +EKQL
Sbjct: 66 TPQESIQKLRETEDILEKKQEFLEKKIDDVRKQNAVKYGTKNKRMALQCLSRKKAFEKQL 125
Query: 321 TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQH 500
IDG L +E QRE LE A+TNA+VL M+ A++A+K H ++D D+V D+MD+I EQ
Sbjct: 126 IHIDGVLATLEHQRETLENASTNAEVLTVMKLASDALKAVHNNMDSDQVRDMMDNIDEQR 185
Query: 501 DISREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVP 665
++++EI +AIS N F N I +L P TLPD P
Sbjct: 186 EVAKEIADAIS-NPGFNNAIDEADLLRELVDLEQEALDKDLLDARAPPVTLPDTP 239
>U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical
protein R12C12.5 protein.
Length = 236
Score = 118 bits (284), Expect = 4e-27
Identities = 57/131 (43%), Positives = 85/131 (64%)
Frame = +3
Query: 141 PTTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQL 320
PT EAI LR+ EELLIKKQE+ E +I+ EV++A+K+ N YE++L
Sbjct: 34 PTADEAIGNLRDAEELLIKKQEYFELRIEQEVESAKKYMKTNKKMALAALRKKKHYEQEL 93
Query: 321 TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQH 500
++IDG LT++EAQR ALE + +V++ + + +K H +D+DKVHD+MD+IA+
Sbjct: 94 SRIDGVLTKLEAQRTALENVGMHNEVIDVLGKTTETLKKEHAKMDIDKVHDLMDEIADGL 153
Query: 501 DISREITEAIS 533
+S E+ EAIS
Sbjct: 154 AMSEELNEAIS 164
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Frame = +3
Query: 141 PTTHEAIQKLRETEELLIKKQEFLEK---KIDLEVQTARKHGTKNXXXXXXXXXXXXX-- 305
P + AI + + + KK + L++ K+ ++ R+ +KN
Sbjct: 14 PDLNNAISNVESRSDSIDKKIQKLDQDLMKLRDQMSKMREGPSKNLIKQKALRVLKQKRM 73
Query: 306 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 485
YE Q Q+D ++ A++G N + M++ M+ +K +++D++ D+ D
Sbjct: 74 YENQKGQLDQQAFNMDQSNFAIQGMKDNQVTVAAMKDGLKTMQKEYKKMNIDQIEDLQDQ 133
Query: 486 IAEQHDISREITEAISNNVAFPN 554
+ + D++ EI EA+S P+
Sbjct: 134 MEDMLDMNNEIQEAMSRQYDTPD 156
>Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical
protein T24B8.2 protein.
Length = 411
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 309 EKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMK--LAHKDIDVDKVHDIMD 482
EK + D ++ + A N VL + A K LA + + DK+H+ MD
Sbjct: 269 EKDIADKDVQYQKLLTMLHQISSAKNNKDVLQAYKSGTAAFKATLARQGLSPDKIHETMD 328
Query: 483 DIAEQHDISREITEAISN 536
D+ D +EI EAIS+
Sbjct: 329 DVVNSMDEYKEIEEAISS 346
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
protein T01E8.3 protein.
Length = 1299
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 126 FCHRIFSRENSFWKP 82
FC +FSRENS W P
Sbjct: 280 FCDFLFSRENSLWDP 294
>AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical
protein D1065.1 protein.
Length = 585
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 500 VLFSNIIHDIVYFVHINVFVCELHGISCLAHSVQYLGIGIGT 375
V++ NII+ I+YF+H + LH L + G G GT
Sbjct: 108 VIYPNIINSIIYFLHRRGRIASLH--RWLLEEPVFNGEGAGT 147
>Z81477-3|CAB03929.2| 316|Caenorhabditis elegans Hypothetical
protein C27C7.3 protein.
Length = 316
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 536 VTDRLGDLTRDVVLFSNIIHDIVYFVH 456
V R+GD+T ++ SN+ +D++ H
Sbjct: 284 VATRIGDITLQIITVSNLYNDMIRLYH 310
>Z68880-4|CAA93093.1| 544|Caenorhabditis elegans Hypothetical
protein T14G10.7 protein.
Length = 544
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 141 PTTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHG 257
PT I+ ++E L E L KK+D ++QT+ +HG
Sbjct: 307 PTRGFLIKDVQERWALTHSAMEELVKKVDSQLQTSLQHG 345
>AL022288-3|CAA18364.1| 173|Caenorhabditis elegans Hypothetical
protein ZK1025.6 protein.
Length = 173
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 536 VTDRLGDLTRDVVLFSNIIHDIVYFVH 456
V R+GD+T ++ SN+ +D++ H
Sbjct: 141 VATRIGDITLQIITVSNLYNDMIRLYH 167
>AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 75 protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 527 RLGDLTRDVVLFSNIIHDIVYFVHINV 447
RLG++T +V +NI HD+V +H+ V
Sbjct: 318 RLGNITLQIVTVTNIYHDLV-CLHLKV 343
>AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical
protein Y48G1A.1 protein.
Length = 901
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 169 SFWIASCVVGPFSSFLPPNIFPRKLILETTYSFLG 65
SF+ C+ F SF +FPRKLI E F G
Sbjct: 64 SFFAKLCISFQFHSF-EDTVFPRKLIFERFSVFCG 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,847
Number of Sequences: 27780
Number of extensions: 252940
Number of successful extensions: 783
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -