Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1076
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domai...    74   1e-13
At4g29160.1 68417.m04172 SNF7 family protein contains Pfam domai...    73   1e-13
At4g29160.2 68417.m04173 SNF7 family protein contains Pfam domai...    63   1e-10
At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domai...    47   1e-05
At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domai...    38   0.006
At5g42950.1 68418.m05236 GYF domain-containing protein contains ...    29   2.8  
At5g27750.1 68418.m03328 F-box family protein contains F-box dom...    29   3.7  
At2g46880.1 68415.m05853 calcineurin-like phosphoesterase family...    28   6.4  
At1g22260.1 68414.m02782 expressed protein                             28   6.4  
At5g46500.1 68418.m05726 expressed protein                             27   8.5  
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof...    27   8.5  
At2g39690.1 68415.m04869 expressed protein contains Pfam profile...    27   8.5  

>At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 213

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
 Frame = +3

Query: 144 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHG-TKNXXXXXXXXXXXXXYEKQL 320
           +T + + KL ET E+L KK+  L KK   EV+ A++    KN             YE+Q+
Sbjct: 15  STLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQV 74

Query: 321 TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQH 500
            Q+     +I  Q   LEGA    + ++ +R  A+AMK   K  ++D V   MD+I EQ 
Sbjct: 75  EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQT 134

Query: 501 DISREITEAIS 533
           +  ++I EA+S
Sbjct: 135 ENMKQIQEALS 145


>At4g29160.1 68417.m04172 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 219

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
 Frame = +3

Query: 153 EAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHG-TKNXXXXXXXXXXXXXYEKQLTQI 329
           + + KL ET E+L KK++ L KK   EV+ A+++   KN             YE Q+ Q+
Sbjct: 17  QTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQL 76

Query: 330 DGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDIS 509
                +I  Q   LEGA    + ++ +R  A+AMK   K  ++D V   MD+I EQ +  
Sbjct: 77  GNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENM 136

Query: 510 REITEAIS 533
           ++I EA++
Sbjct: 137 KQIQEALA 144


>At4g29160.2 68417.m04173 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 192

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
 Frame = +3

Query: 186 LLIKKQEFLEKKIDLEVQTARKHG-TKNXXXXXXXXXXXXXYEKQLTQIDGTLTQIEAQR 362
           +L KK++ L KK   EV+ A+++   KN             YE Q+ Q+     +I  Q 
Sbjct: 1   MLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQM 60

Query: 363 EALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISREITEAIS 533
             LEGA    + ++ +R  A+AMK   K  ++D V   MD+I EQ +  ++I EA++
Sbjct: 61  IMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALA 117


>At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 219

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
 Frame = +3

Query: 156 AIQKLRETEELLIKKQEFLEKKIDLEVQTARKH-GTKNXXXXXXXXXXXXXYEKQLTQID 332
           AI  L+     L + Q+ LEK I+ E Q AR     K               E+ L Q+D
Sbjct: 17  AILSLKTQRRKLGQYQQKLEKVIEAEKQAARDLIREKRKDRALLALRKKRTQEELLKQVD 76

Query: 333 GTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISR 512
             +  +E Q   +E  +    V  ++++  +A+K    ++D+D V  +MDD A+      
Sbjct: 77  QWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDDVQKLMDDTADAKAYQD 136

Query: 513 EITEAISNNVA 545
           E+   +   ++
Sbjct: 137 ELNAILGEKLS 147


>At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 235

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +3

Query: 306 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 485
           YE Q   +      ++    A EG     Q +  ++ A   +K   K + +  + ++ DD
Sbjct: 75  YEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDD 134

Query: 486 IAEQHDISREITEAISNNVAFPNDI 560
           + +  D S EI E +  +   P+DI
Sbjct: 135 MMDLMDESSEIQETLGRSYNVPDDI 159


>At5g42950.1 68418.m05236 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1714

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +3

Query: 465  VHDIM-DDI-AEQHDISREITEAISNNVAF 548
            +HD++ DD+ A+  D  RE+ E ISNN AF
Sbjct: 1287 LHDLLADDVFAKSSDKEREVMEIISNNDAF 1316


>At5g27750.1 68418.m03328 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 175 SRSFWIASCVVGPFSSFLPPNIFPRKLIL 89
           S  +W   C++ P+  F+P N+F  K ++
Sbjct: 116 STMYWEEECIMYPYLEFMPLNLFTSKTLV 144


>At2g46880.1 68415.m05853 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 401

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 458 HINVFVCELHGIS-CLAHSVQYLGIG 384
           H+N F  ELHGI+ C A    Y G G
Sbjct: 307 HVNDFCAELHGINLCYAGGAGYHGYG 332


>At1g22260.1 68414.m02782 expressed protein
          Length = 857

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 345 QIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHD 503
           Q+E  R   E +  N Q +N +R   +  K    + + DKV  I+ D++ + D
Sbjct: 545 QLELSRHLKELSQRNDQAINEIRRKYDVEKHEIINSEKDKVEKIIKDLSNKFD 597


>At5g46500.1 68418.m05726 expressed protein
          Length = 417

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 321 TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAE 494
           T + G + +IE   E+    + N +   + + AA      H DID++++ D  DDI E
Sbjct: 266 TPVQGLVNEIEHNGES---GDNNVETERSTKHAAQRNYYDHVDIDIEQM-DSDDDIEE 319


>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 734

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = +3

Query: 351 EAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISREITE 524
           +  +E  +G N    V   +   A+    A  + + ++ HD+  +  E HD+  E  E
Sbjct: 525 DVNKEKEDGGNKEKNVNVAIETEASVEPEASVEPEANETHDVEPEANETHDVEPEANE 582


>At2g39690.1 68415.m04869 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 498

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
 Frame = -2

Query: 542 HIVTDRLGDLTRDVVLFSNIIH------DIVYFVH 456
           H++ D  G +TRD+  + N IH      D+ +F H
Sbjct: 235 HVLPDSSGGVTRDIGPYKNFIHISRSSIDVTHFTH 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,014
Number of Sequences: 28952
Number of extensions: 232188
Number of successful extensions: 613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)