Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1075
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 1.8
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 4.3
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 26 4.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.3
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 25 7.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 7.5
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 25 9.9
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 25 9.9
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.4
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Frame = +1
Query: 133 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGEISRDGSVQ 300
EY++EG +++ N IID + E G KL KA + T+T E D Q
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSE-PLDTPEQ 658
Query: 301 V---LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEI 468
V L N ++A + +SH VF+ L+ + G+ + N I S+ +
Sbjct: 659 VTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERL 718
Query: 469 DSSKLV 486
SS+ V
Sbjct: 719 SSSQSV 724
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 406 KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 507
K+EGDAKT DN +++ K D K D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 457 SKEIDSSKLVHTDFSEEACKFTSSSVITEHGKH 555
+KEI+SSK TD E FT + + + H
Sbjct: 96 AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 218 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 370
SS P P ++ ++ S+RL + T+P+L N RKSL
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 329 PSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSIISSRNTPKR*TL 475
P+LTT+NT + S SS +E+ S+ + + I++ +TP T+
Sbjct: 296 PNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTI 344
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 376 LDETFSCHRICSCKRWRSYYSQSP 305
L E H+ C+ K W YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 43 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 201
N N +GI E+SK+ + KN + SS + K V+ + I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 9.9
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +1
Query: 280 SRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHS 459
+RDG VLA + N I Y ++ H V +L +A +V NF
Sbjct: 41 NRDGKTDVLANEEGNRQIPSILSYHGDQEYHGV-----QARGQLVRNADNSVTNFRDLLG 95
Query: 460 KEIDSSKLVHTDFS 501
K D L H +S
Sbjct: 96 KSHDELTLHHCHYS 109
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 179 SSTASRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 280
+S SR I PSSP+TPI P+ + +LSL++Y
Sbjct: 534 ASLPSRRIVYKPPSSPSTPISMNPRP-KGILSLQQY 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,303
Number of Sequences: 5004
Number of extensions: 49663
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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