BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1074 (503 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 104 9e-24 SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 35 0.008 SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 33 0.024 SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 33 0.032 SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 29 0.52 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 0.92 SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 27 1.2 SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 2.1 SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 3.7 SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 26 3.7 SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 3.7 SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.7 SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 4.9 SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 6.5 SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.5 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 8.5 SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 25 8.5 SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.5 >SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces pombe|chr 2|||Manual Length = 84 Score = 104 bits (249), Expect = 9e-24 Identities = 46/80 (57%), Positives = 65/80 (81%) Frame = +1 Query: 91 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 270 +VQKVM+ PIN IF+ LQ + V IWL+E ++R++G I GFDE+MNIVLD+A +V K+ Sbjct: 4 RVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKN 63 Query: 271 KNRKQIGRIMMKGDNITLIQ 330 N++++GRI++KGDNITLIQ Sbjct: 64 -NKRELGRILLKGDNITLIQ 82 >SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces pombe|chr 2|||Manual Length = 77 Score = 34.7 bits (76), Expect = 0.008 Identities = 15/57 (26%), Positives = 38/57 (66%) Frame = +1 Query: 160 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330 Q+++ N + ++ G + G+D ++NIVL+++ E + + K IG + ++G+++ +I+ Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIE 71 >SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosaccharomyces pombe|chr 2|||Manual Length = 80 Score = 33.1 bits (72), Expect = 0.024 Identities = 13/55 (23%), Positives = 29/55 (52%) Frame = +1 Query: 163 IWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 327 +W+ G +VGFD+Y+NIVL + E + ++ +++ G+ + ++ Sbjct: 19 LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCML 73 >SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosaccharomyces pombe|chr 3|||Manual Length = 113 Score = 32.7 bits (71), Expect = 0.032 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 190 RIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKG 309 +I G + GFD+ MN+VLD+ EE ++ K G I G Sbjct: 45 QITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLG 84 >SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces pombe|chr 1|||Manual Length = 147 Score = 28.7 bits (61), Expect = 0.52 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +1 Query: 199 GHIVGFDEYMNIVLDEAEEV-HMKSKN 276 G ++ FD +MN+VL + +E H+K +N Sbjct: 26 GQLLAFDGFMNLVLSDCQEYRHIKKQN 52 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 27.9 bits (59), Expect = 0.92 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = +3 Query: 237 SRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEV 389 S++ S ++KQ+T + N + + T + EP+ L +FAK+ V Sbjct: 378 SKQDSPSTVPVDKQETAKPINKQVSSNETSAQEEPRESVAALRARFAKANV 428 >SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccharomyces pombe|chr 2|||Manual Length = 93 Score = 27.5 bits (58), Expect = 1.2 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = +1 Query: 193 IEGHIVGFDEYMNIVLDEAEEV 258 + G + +DE++N+VL +AEE+ Sbjct: 32 LNGRLHAYDEHLNMVLGDAEEI 53 >SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1628 Score = 26.6 bits (56), Expect = 2.1 Identities = 23/69 (33%), Positives = 32/69 (46%) Frame = +3 Query: 141 TEPESCANLAIRKREPED*RTHRGF**IHEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHN 320 T PE A+R R P + R + E SR R+P + + +NND R + Sbjct: 1393 TTPEGNRR-ALRTRTPTNEDIQRSDSKLREDQSRD--RTP---QSRSFTNENNDNLRSVS 1446 Query: 321 THTEREPQR 347 HT REPQ+ Sbjct: 1447 RHTRREPQQ 1455 >SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1680 Score = 25.8 bits (54), Expect = 3.7 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +1 Query: 64 QKMAYKGPPKVQKVMVQPI 120 +K+AYKGPP+++K + I Sbjct: 945 KKIAYKGPPQLRKTLQSQI 963 >SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 746 Score = 25.8 bits (54), Expect = 3.7 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +3 Query: 318 NTHTEREPQRVSVKLGYKFAKSEVIPS 398 + HT R +S+KL +++ S+VIP+ Sbjct: 308 DNHTSRVAILISMKLAFQYQLSQVIPT 334 >SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation complex subunit Cdc45|Schizosaccharomyces pombe|chr 1|||Manual Length = 638 Score = 25.8 bits (54), Expect = 3.7 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 318 YVVSLHHYSSYLFSVFRFHMDFFSFVENNIHVF 220 Y+VS+ S Y+ R H ++ENNI VF Sbjct: 96 YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVF 128 >SPCC162.08c |nup211||nuclear pore complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1837 Score = 25.8 bits (54), Expect = 3.7 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +3 Query: 225 HEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKL 362 H + S ++ YE E QK +KN+ +NT RE Q V+ KL Sbjct: 176 HTQQEKASLQTNYEFELQKLTQKNSIL-ENNNTWLSRELQGVNDKL 220 >SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 341 Score = 25.4 bits (53), Expect = 4.9 Identities = 13/51 (25%), Positives = 28/51 (54%) Frame = +3 Query: 240 RRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEVI 392 RRS ++ ++EK+K K D+ ++ +T +++ Q ++ G K E + Sbjct: 261 RRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKN-QIDEIEKGQKEVDEEPV 310 >SPBC354.05c |sre2||membrane-tethered transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 793 Score = 25.0 bits (52), Expect = 6.5 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = +2 Query: 8 LAAFICFYHNFSFTKVNTNKKWLIKAHRKFR 100 L AF+CF + T T +KW + FR Sbjct: 723 LLAFLCFAMHILLTPEATLRKWASSIYLSFR 753 >SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Manual Length = 899 Score = 24.6 bits (51), Expect = 8.5 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -1 Query: 470 LEIEKTSNPVTVISLIHM*LELLFTRNDFTFSKFIT*LHTDALG 339 LE+ S T ++ + +LLF +N+ F KF+ H +G Sbjct: 533 LELTSESLSSTNDTIRRLQRDLLFLQNELRFEKFVRQQHLQNIG 576 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 24.6 bits (51), Expect = 8.5 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 11/118 (9%) Frame = +3 Query: 42 HSRKSIQTKNGL*RPTESSEGDGTAHQPYLPIPTEPESCANLAIRKREPED*RTHR--GF 215 H R+S ++ + S +HQ P+ + ++ + R R P HR + Sbjct: 115 HHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDY 174 Query: 216 **IHEYCSRRS-*RSPYEIEKQKTNRKNN-------DEGRQHNTHTER-EPQRVSVKL 362 Y SR S R YE +++R ++ D+ R H R P+ S KL Sbjct: 175 SRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSSKL 232 >SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosaccharomyces pombe|chr 2|||Manual Length = 78 Score = 24.6 bits (51), Expect = 8.5 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +1 Query: 196 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNI 318 +G + D YMN+ L AEE+ + +G I+++ +N+ Sbjct: 31 KGTLQSVDSYMNLQLLNAEEL-VDGVKTGDLGEILIRCNNV 70 >SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|Schizosaccharomyces pombe|chr 1|||Manual Length = 1199 Score = 24.6 bits (51), Expect = 8.5 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = +1 Query: 67 KMAYKGPPKVQKVM 108 K+ YKGPP+V+K + Sbjct: 494 KIVYKGPPQVRKAL 507 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,981,996 Number of Sequences: 5004 Number of extensions: 40357 Number of successful extensions: 128 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 127 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 200198394 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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