Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1074
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 104 9e-24
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 35 0.008
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 33 0.024
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 33 0.032
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 29 0.52
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 0.92
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 27 1.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 2.1
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 3.7
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 26 3.7
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 3.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.7
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 4.9
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 6.5
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.5
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 8.5
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 25 8.5
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.5
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 104 bits (249), Expect = 9e-24
Identities = 46/80 (57%), Positives = 65/80 (81%)
Frame = +1
Query: 91 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 270
+VQKVM+ PIN IF+ LQ + V IWL+E ++R++G I GFDE+MNIVLD+A +V K+
Sbjct: 4 RVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKN 63
Query: 271 KNRKQIGRIMMKGDNITLIQ 330
N++++GRI++KGDNITLIQ
Sbjct: 64 -NKRELGRILLKGDNITLIQ 82
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 34.7 bits (76), Expect = 0.008
Identities = 15/57 (26%), Positives = 38/57 (66%)
Frame = +1
Query: 160 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330
Q+++ N + ++ G + G+D ++NIVL+++ E + + K IG + ++G+++ +I+
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIE 71
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 33.1 bits (72), Expect = 0.024
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 163 IWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 327
+W+ G +VGFD+Y+NIVL + E + ++ +++ G+ + ++
Sbjct: 19 LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCML 73
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 32.7 bits (71), Expect = 0.032
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 190 RIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKG 309
+I G + GFD+ MN+VLD+ EE ++ K G I G
Sbjct: 45 QITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLG 84
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 0.52
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 199 GHIVGFDEYMNIVLDEAEEV-HMKSKN 276
G ++ FD +MN+VL + +E H+K +N
Sbjct: 26 GQLLAFDGFMNLVLSDCQEYRHIKKQN 52
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 0.92
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 237 SRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEV 389
S++ S ++KQ+T + N + + T + EP+ L +FAK+ V
Sbjct: 378 SKQDSPSTVPVDKQETAKPINKQVSSNETSAQEEPRESVAALRARFAKANV 428
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 193 IEGHIVGFDEYMNIVLDEAEEV 258
+ G + +DE++N+VL +AEE+
Sbjct: 32 LNGRLHAYDEHLNMVLGDAEEI 53
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.6 bits (56), Expect = 2.1
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = +3
Query: 141 TEPESCANLAIRKREPED*RTHRGF**IHEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHN 320
T PE A+R R P + R + E SR R+P + + +NND R +
Sbjct: 1393 TTPEGNRR-ALRTRTPTNEDIQRSDSKLREDQSRD--RTP---QSRSFTNENNDNLRSVS 1446
Query: 321 THTEREPQR 347
HT REPQ+
Sbjct: 1447 RHTRREPQQ 1455
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 64 QKMAYKGPPKVQKVMVQPI 120
+K+AYKGPP+++K + I
Sbjct: 945 KKIAYKGPPQLRKTLQSQI 963
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 318 NTHTEREPQRVSVKLGYKFAKSEVIPS 398
+ HT R +S+KL +++ S+VIP+
Sbjct: 308 DNHTSRVAILISMKLAFQYQLSQVIPT 334
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 318 YVVSLHHYSSYLFSVFRFHMDFFSFVENNIHVF 220
Y+VS+ S Y+ R H ++ENNI VF
Sbjct: 96 YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVF 128
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 225 HEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKL 362
H + S ++ YE E QK +KN+ +NT RE Q V+ KL
Sbjct: 176 HTQQEKASLQTNYEFELQKLTQKNSIL-ENNNTWLSRELQGVNDKL 220
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 240 RRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEVI 392
RRS ++ ++EK+K K D+ ++ +T +++ Q ++ G K E +
Sbjct: 261 RRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKN-QIDEIEKGQKEVDEEPV 310
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 8 LAAFICFYHNFSFTKVNTNKKWLIKAHRKFR 100
L AF+CF + T T +KW + FR
Sbjct: 723 LLAFLCFAMHILLTPEATLRKWASSIYLSFR 753
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 470 LEIEKTSNPVTVISLIHM*LELLFTRNDFTFSKFIT*LHTDALG 339
LE+ S T ++ + +LLF +N+ F KF+ H +G
Sbjct: 533 LELTSESLSSTNDTIRRLQRDLLFLQNELRFEKFVRQQHLQNIG 576
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 24.6 bits (51), Expect = 8.5
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Frame = +3
Query: 42 HSRKSIQTKNGL*RPTESSEGDGTAHQPYLPIPTEPESCANLAIRKREPED*RTHR--GF 215
H R+S ++ + S +HQ P+ + ++ + R R P HR +
Sbjct: 115 HHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDY 174
Query: 216 **IHEYCSRRS-*RSPYEIEKQKTNRKNN-------DEGRQHNTHTER-EPQRVSVKL 362
Y SR S R YE +++R ++ D+ R H R P+ S KL
Sbjct: 175 SRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSSKL 232
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 196 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNI 318
+G + D YMN+ L AEE+ + +G I+++ +N+
Sbjct: 31 KGTLQSVDSYMNLQLLNAEEL-VDGVKTGDLGEILIRCNNV 70
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.6 bits (51), Expect = 8.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 67 KMAYKGPPKVQKVM 108
K+ YKGPP+V+K +
Sbjct: 494 KIVYKGPPQVRKAL 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,996
Number of Sequences: 5004
Number of extensions: 40357
Number of successful extensions: 128
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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