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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1074
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...   104   9e-24
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    35   0.008
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    33   0.024
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    33   0.032
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    29   0.52 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   0.92 
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    27   1.2  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   3.7  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   3.7  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    26   3.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   3.7  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   4.9  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   6.5  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.5  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   8.5  
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    25   8.5  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   8.5  

>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score =  104 bits (249), Expect = 9e-24
 Identities = 46/80 (57%), Positives = 65/80 (81%)
 Frame = +1

Query: 91  KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 270
           +VQKVM+ PIN IF+ LQ  + V IWL+E  ++R++G I GFDE+MNIVLD+A +V  K+
Sbjct: 4   RVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKN 63

Query: 271 KNRKQIGRIMMKGDNITLIQ 330
            N++++GRI++KGDNITLIQ
Sbjct: 64  -NKRELGRILLKGDNITLIQ 82


>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 15/57 (26%), Positives = 38/57 (66%)
 Frame = +1

Query: 160 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330
           Q+++  N + ++ G + G+D ++NIVL+++ E  +  +  K IG + ++G+++ +I+
Sbjct: 16  QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIE 71


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 33.1 bits (72), Expect = 0.024
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +1

Query: 163 IWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 327
           +W+         G +VGFD+Y+NIVL +  E    +   ++   +++ G+ + ++
Sbjct: 19  LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCML 73


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 32.7 bits (71), Expect = 0.032
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 190 RIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKG 309
           +I G + GFD+ MN+VLD+ EE     ++ K  G I   G
Sbjct: 45  QITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLG 84


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 199 GHIVGFDEYMNIVLDEAEEV-HMKSKN 276
           G ++ FD +MN+VL + +E  H+K +N
Sbjct: 26  GQLLAFDGFMNLVLSDCQEYRHIKKQN 52


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 237 SRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEV 389
           S++   S   ++KQ+T +  N +   + T  + EP+     L  +FAK+ V
Sbjct: 378 SKQDSPSTVPVDKQETAKPINKQVSSNETSAQEEPRESVAALRARFAKANV 428


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 193 IEGHIVGFDEYMNIVLDEAEEV 258
           + G +  +DE++N+VL +AEE+
Sbjct: 32  LNGRLHAYDEHLNMVLGDAEEI 53


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 23/69 (33%), Positives = 32/69 (46%)
 Frame = +3

Query: 141  TEPESCANLAIRKREPED*RTHRGF**IHEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHN 320
            T PE     A+R R P +    R    + E  SR   R+P   + +    +NND  R  +
Sbjct: 1393 TTPEGNRR-ALRTRTPTNEDIQRSDSKLREDQSRD--RTP---QSRSFTNENNDNLRSVS 1446

Query: 321  THTEREPQR 347
             HT REPQ+
Sbjct: 1447 RHTRREPQQ 1455


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 64   QKMAYKGPPKVQKVMVQPI 120
            +K+AYKGPP+++K +   I
Sbjct: 945  KKIAYKGPPQLRKTLQSQI 963


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 318 NTHTEREPQRVSVKLGYKFAKSEVIPS 398
           + HT R    +S+KL +++  S+VIP+
Sbjct: 308 DNHTSRVAILISMKLAFQYQLSQVIPT 334


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 318 YVVSLHHYSSYLFSVFRFHMDFFSFVENNIHVF 220
           Y+VS+   S Y+    R H     ++ENNI VF
Sbjct: 96  YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVF 128


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 225 HEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKL 362
           H    + S ++ YE E QK  +KN+     +NT   RE Q V+ KL
Sbjct: 176 HTQQEKASLQTNYEFELQKLTQKNSIL-ENNNTWLSRELQGVNDKL 220


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 240 RRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEVI 392
           RRS ++  ++EK+K   K  D+ ++ +T +++  Q   ++ G K    E +
Sbjct: 261 RRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKN-QIDEIEKGQKEVDEEPV 310


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 8   LAAFICFYHNFSFTKVNTNKKWLIKAHRKFR 100
           L AF+CF  +   T   T +KW    +  FR
Sbjct: 723 LLAFLCFAMHILLTPEATLRKWASSIYLSFR 753


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 470 LEIEKTSNPVTVISLIHM*LELLFTRNDFTFSKFIT*LHTDALG 339
           LE+   S   T  ++  +  +LLF +N+  F KF+   H   +G
Sbjct: 533 LELTSESLSSTNDTIRRLQRDLLFLQNELRFEKFVRQQHLQNIG 576


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
 Frame = +3

Query: 42  HSRKSIQTKNGL*RPTESSEGDGTAHQPYLPIPTEPESCANLAIRKREPED*RTHR--GF 215
           H R+S   ++     + S      +HQ   P+ +     ++ + R R P     HR   +
Sbjct: 115 HHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDY 174

Query: 216 **IHEYCSRRS-*RSPYEIEKQKTNRKNN-------DEGRQHNTHTER-EPQRVSVKL 362
                Y SR S  R  YE    +++R ++       D+ R H     R  P+  S KL
Sbjct: 175 SRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSSKL 232


>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 196 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNI 318
           +G +   D YMN+ L  AEE+ +       +G I+++ +N+
Sbjct: 31  KGTLQSVDSYMNLQLLNAEEL-VDGVKTGDLGEILIRCNNV 70


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 67  KMAYKGPPKVQKVM 108
           K+ YKGPP+V+K +
Sbjct: 494 KIVYKGPPQVRKAL 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,996
Number of Sequences: 5004
Number of extensions: 40357
Number of successful extensions: 128
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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