Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1074
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 99 2e-21
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 69 2e-12
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 44 7e-05
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 41 5e-04
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 40 0.001
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 31 0.69
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 29 2.1
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 29 2.1
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 27 6.5
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 8.6
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 27 8.6
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 27 8.6
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 99.1 bits (236), Expect = 2e-21
Identities = 45/79 (56%), Positives = 62/79 (78%)
Frame = +1
Query: 91 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 270
KVQ++M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VLD+AEE+++K
Sbjct: 5 KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKK 55
Query: 271 KNRKQIGRIMMKGDNITLI 327
RK +GRI++KGDNITL+
Sbjct: 56 DTRKSLGRILLKGDNITLM 74
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/49 (59%), Positives = 40/49 (81%)
Frame = +1
Query: 181 VNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 327
V++ + H GFDEYMN+VLDEAEE+++K RK +GRI++KGDNITL+
Sbjct: 88 VSVTLHVHAKGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/50 (60%), Positives = 41/50 (82%)
Frame = +1
Query: 91 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVL 240
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I+ Y+N VL
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII---MYVNSVL 51
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/82 (28%), Positives = 47/82 (57%)
Frame = +1
Query: 85 PPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHM 264
PP ++K M + + + Y + + + N N + G + GFD++MN+V+D EV+
Sbjct: 7 PPDLKKYMDKKLQTLMVYSFTLFSI-LPVKLNANRVVIGTLRGFDQFMNLVVDNTVEVNG 65
Query: 265 KSKNRKQIGRIMMKGDNITLIQ 330
KN IG ++++G+++ +I+
Sbjct: 66 NEKN--DIGMVVIRGNSVVMIE 85
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/66 (27%), Positives = 42/66 (63%)
Frame = +1
Query: 133 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 312
+Y+ + ++++ N N I G + GFD++MN+V+D EV+ ++ IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRVIVGTLRGFDQFMNLVVDNTVEVN--GNDKTDIGMVVVRGN 65
Query: 313 NITLIQ 330
++ +I+
Sbjct: 66 SVVMIE 71
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/59 (27%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 160 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLIQ 330
+IW+ + + G + GFD Y+N+VL++ E ++ R+ ++ +I++ G+NI +++
Sbjct: 91 KIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAIVR 149
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 30.7 bits (66), Expect = 0.69
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = +1
Query: 193 IEGHIVGFDEYMNIVLDEAEEVHMK-------SKNRKQIGRIMMKGDNITLI 327
+ G + G+D+ +N+VLDEA E + S +Q+G I+ +G + L+
Sbjct: 36 VTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTRQLGLIVCRGTAVMLV 87
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +1
Query: 196 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330
+G++V D YMN+ L EE ++ + +G I+++ +N+ ++
Sbjct: 43 DGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLR 86
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +1
Query: 187 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330
+ +G++V D YMN+ L EE ++ + +G I+++ +N+ ++
Sbjct: 79 MEYKGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLR 125
>03_02_0142 +
5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 87 TESSEGDGTAHQPYLPIPTEPES 155
T S +G G H +L IPT+P +
Sbjct: 153 TTSRDGSGNQHSQFLGIPTDPRN 175
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 85 PPKVQKVMVQPINLIFRYLQNRSRVQIWLY 174
PPK QK + +Y++N R W+Y
Sbjct: 506 PPKCQKTQCCANGMSLKYVKNYKRKAFWIY 535
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 178 NVNLRIEGHIVGFDEYMNIVLDEAEE 255
N I G + GFD+ NI+LDE+ E
Sbjct: 21 NDGRNIVGTLRGFDQATNIILDESHE 46
>01_07_0041 +
40688242-40688278,40688396-40688502,40688612-40688707,
40688859-40688915,40689033-40689194,40689310-40689394,
40689648-40689738,40689813-40689977,40690121-40690240,
40690330-40690402,40690482-40690650,40690741-40691651,
40691839-40691931,40692065-40692255,40692343-40692455,
40692757-40692783,40693915-40693949
Length = 843
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 87 TESSEGDGTAHQPYLPIPTEPESCAN-LAIRKREPED 194
TES++ D TAH+P + P+ + A+ L ++R P D
Sbjct: 421 TESNDSDVTAHKPMMWSPSPNAAKAHPLTFQQRPPMD 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,863,599
Number of Sequences: 37544
Number of extensions: 229802
Number of successful extensions: 569
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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