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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1074
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    99   2e-21
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140...    69   2e-12
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852...    44   7e-05
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488...    41   5e-04
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    40   0.001
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455...    31   0.69 
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460...    29   2.1  
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427...    29   2.1  
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    27   6.5  
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    27   8.6  
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032...    27   8.6  
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887...    27   8.6  

>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 45/79 (56%), Positives = 62/79 (78%)
 Frame = +1

Query: 91  KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 270
           KVQ++M QPI         ++R+QIWL+E  +LRIEG I+GFDEYMN+VLD+AEE+++K 
Sbjct: 5   KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKK 55

Query: 271 KNRKQIGRIMMKGDNITLI 327
             RK +GRI++KGDNITL+
Sbjct: 56  DTRKSLGRILLKGDNITLM 74


>02_01_0209 -
           1399613-1399622,1399719-1399764,1399849-1399927,
           1400004-1400162,1400988-1401050,1401154-1401222
          Length = 141

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 29/49 (59%), Positives = 40/49 (81%)
 Frame = +1

Query: 181 VNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 327
           V++ +  H  GFDEYMN+VLDEAEE+++K   RK +GRI++KGDNITL+
Sbjct: 88  VSVTLHVHAKGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/50 (60%), Positives = 41/50 (82%)
 Frame = +1

Query: 91  KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVL 240
           KVQ++M QPINLIFR+LQ+++R+QIWL+E  +LRIEG I+    Y+N VL
Sbjct: 5   KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII---MYVNSVL 51


>07_03_1222 -
           24983294-24983356,24983695-24983858,24985209-24985231,
           24985340-24985374
          Length = 94

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 23/82 (28%), Positives = 47/82 (57%)
 Frame = +1

Query: 85  PPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHM 264
           PP ++K M + +  +  Y      + + +  N N  + G + GFD++MN+V+D   EV+ 
Sbjct: 7   PPDLKKYMDKKLQTLMVYSFTLFSI-LPVKLNANRVVIGTLRGFDQFMNLVVDNTVEVNG 65

Query: 265 KSKNRKQIGRIMMKGDNITLIQ 330
             KN   IG ++++G+++ +I+
Sbjct: 66  NEKN--DIGMVVIRGNSVVMIE 85


>03_04_0043 +
           16747103-16747137,16747237-16747259,16748735-16748856,
           16748980-16749042
          Length = 80

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 18/66 (27%), Positives = 42/66 (63%)
 Frame = +1

Query: 133 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 312
           +Y+  + ++++    N N  I G + GFD++MN+V+D   EV+    ++  IG ++++G+
Sbjct: 12  KYMDKKLQIKL----NANRVIVGTLRGFDQFMNLVVDNTVEVN--GNDKTDIGMVVVRGN 65

Query: 313 NITLIQ 330
           ++ +I+
Sbjct: 66  SVVMIE 71


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/59 (27%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
 Frame = +1

Query: 160 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLIQ 330
           +IW+    +  + G + GFD Y+N+VL++  E    ++ R+  ++ +I++ G+NI +++
Sbjct: 91  KIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAIVR 149


>08_01_0523 +
           4556309-4556311,4556434-4556515,4557528-4557548,
           4557824-4557895,4558259-4558311,4558721-4558807
          Length = 105

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
 Frame = +1

Query: 193 IEGHIVGFDEYMNIVLDEAEEVHMK-------SKNRKQIGRIMMKGDNITLI 327
           + G + G+D+ +N+VLDEA E   +       S   +Q+G I+ +G  + L+
Sbjct: 36  VTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTRQLGLIVCRGTAVMLV 87


>11_06_0609 +
           25444941-25444946,25445678-25445765,25446013-25446048,
           25446069-25446106,25446219-25446283,25446622-25446685
          Length = 98

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +1

Query: 196 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330
           +G++V  D YMN+ L   EE ++  +    +G I+++ +N+  ++
Sbjct: 43  DGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLR 86


>02_01_0576 -
           4270808-4270871,4271548-4271612,4271717-4271754,
           4272060-4272147,4272507-4272625,4273682-4273721
          Length = 137

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 187 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330
           +  +G++V  D YMN+ L   EE ++  +    +G I+++ +N+  ++
Sbjct: 79  MEYKGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLR 125


>03_02_0142 +
           5877480-5879663,5879783-5879898,5880749-5882419,
           5882570-5882618,5882703-5882941,5883073-5883174,
           5883634-5883862
          Length = 1529

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 87  TESSEGDGTAHQPYLPIPTEPES 155
           T S +G G  H  +L IPT+P +
Sbjct: 153 TTSRDGSGNQHSQFLGIPTDPRN 175


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 85  PPKVQKVMVQPINLIFRYLQNRSRVQIWLY 174
           PPK QK       +  +Y++N  R   W+Y
Sbjct: 506 PPKCQKTQCCANGMSLKYVKNYKRKAFWIY 535


>05_07_0342 +
           29402867-29402906,29403012-29403052,29403146-29403220,
           29403523-29403648,29404195-29404247,29404385-29404475
          Length = 141

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 178 NVNLRIEGHIVGFDEYMNIVLDEAEE 255
           N    I G + GFD+  NI+LDE+ E
Sbjct: 21  NDGRNIVGTLRGFDQATNIILDESHE 46


>01_07_0041 +
           40688242-40688278,40688396-40688502,40688612-40688707,
           40688859-40688915,40689033-40689194,40689310-40689394,
           40689648-40689738,40689813-40689977,40690121-40690240,
           40690330-40690402,40690482-40690650,40690741-40691651,
           40691839-40691931,40692065-40692255,40692343-40692455,
           40692757-40692783,40693915-40693949
          Length = 843

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 87  TESSEGDGTAHQPYLPIPTEPESCAN-LAIRKREPED 194
           TES++ D TAH+P +  P+   + A+ L  ++R P D
Sbjct: 421 TESNDSDVTAHKPMMWSPSPNAAKAHPLTFQQRPPMD 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,863,599
Number of Sequences: 37544
Number of extensions: 229802
Number of successful extensions: 569
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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