BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1074 (503 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 99 2e-21 02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 69 2e-12 07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 44 7e-05 03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 41 5e-04 05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 40 0.001 08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 31 0.69 11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 29 2.1 02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 29 2.1 03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 27 6.5 11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 8.6 05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 27 8.6 01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 27 8.6 >08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949, 2961038-2961083,2961566-2961671 Length = 111 Score = 99.1 bits (236), Expect = 2e-21 Identities = 45/79 (56%), Positives = 62/79 (78%) Frame = +1 Query: 91 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 270 KVQ++M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VLD+AEE+++K Sbjct: 5 KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKK 55 Query: 271 KNRKQIGRIMMKGDNITLI 327 RK +GRI++KGDNITL+ Sbjct: 56 DTRKSLGRILLKGDNITLM 74 >02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927, 1400004-1400162,1400988-1401050,1401154-1401222 Length = 141 Score = 69.3 bits (162), Expect = 2e-12 Identities = 29/49 (59%), Positives = 40/49 (81%) Frame = +1 Query: 181 VNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 327 V++ + H GFDEYMN+VLDEAEE+++K RK +GRI++KGDNITL+ Sbjct: 88 VSVTLHVHAKGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136 Score = 66.1 bits (154), Expect = 2e-11 Identities = 30/50 (60%), Positives = 41/50 (82%) Frame = +1 Query: 91 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVL 240 KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I+ Y+N VL Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII---MYVNSVL 51 >07_03_1222 - 24983294-24983356,24983695-24983858,24985209-24985231, 24985340-24985374 Length = 94 Score = 44.0 bits (99), Expect = 7e-05 Identities = 23/82 (28%), Positives = 47/82 (57%) Frame = +1 Query: 85 PPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHM 264 PP ++K M + + + Y + + + N N + G + GFD++MN+V+D EV+ Sbjct: 7 PPDLKKYMDKKLQTLMVYSFTLFSI-LPVKLNANRVVIGTLRGFDQFMNLVVDNTVEVNG 65 Query: 265 KSKNRKQIGRIMMKGDNITLIQ 330 KN IG ++++G+++ +I+ Sbjct: 66 NEKN--DIGMVVIRGNSVVMIE 85 >03_04_0043 + 16747103-16747137,16747237-16747259,16748735-16748856, 16748980-16749042 Length = 80 Score = 41.1 bits (92), Expect = 5e-04 Identities = 18/66 (27%), Positives = 42/66 (63%) Frame = +1 Query: 133 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 312 +Y+ + ++++ N N I G + GFD++MN+V+D EV+ ++ IG ++++G+ Sbjct: 12 KYMDKKLQIKL----NANRVIVGTLRGFDQFMNLVVDNTVEVN--GNDKTDIGMVVVRGN 65 Query: 313 NITLIQ 330 ++ +I+ Sbjct: 66 SVVMIE 71 >05_04_0169 - 18694418-18694453,18694516-18694627,18696095-18696243, 18696980-18697033,18697110-18697222,18697323-18697374 Length = 171 Score = 39.9 bits (89), Expect = 0.001 Identities = 16/59 (27%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Frame = +1 Query: 160 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLIQ 330 +IW+ + + G + GFD Y+N+VL++ E ++ R+ ++ +I++ G+NI +++ Sbjct: 91 KIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAIVR 149 >08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548, 4557824-4557895,4558259-4558311,4558721-4558807 Length = 105 Score = 30.7 bits (66), Expect = 0.69 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 7/52 (13%) Frame = +1 Query: 193 IEGHIVGFDEYMNIVLDEAEEVHMK-------SKNRKQIGRIMMKGDNITLI 327 + G + G+D+ +N+VLDEA E + S +Q+G I+ +G + L+ Sbjct: 36 VTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTRQLGLIVCRGTAVMLV 87 >11_06_0609 + 25444941-25444946,25445678-25445765,25446013-25446048, 25446069-25446106,25446219-25446283,25446622-25446685 Length = 98 Score = 29.1 bits (62), Expect = 2.1 Identities = 12/45 (26%), Positives = 27/45 (60%) Frame = +1 Query: 196 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330 +G++V D YMN+ L EE ++ + +G I+++ +N+ ++ Sbjct: 43 DGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLR 86 >02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754, 4272060-4272147,4272507-4272625,4273682-4273721 Length = 137 Score = 29.1 bits (62), Expect = 2.1 Identities = 12/48 (25%), Positives = 28/48 (58%) Frame = +1 Query: 187 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330 + +G++V D YMN+ L EE ++ + +G I+++ +N+ ++ Sbjct: 79 MEYKGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLR 125 >03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419, 5882570-5882618,5882703-5882941,5883073-5883174, 5883634-5883862 Length = 1529 Score = 27.5 bits (58), Expect = 6.5 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 87 TESSEGDGTAHQPYLPIPTEPES 155 T S +G G H +L IPT+P + Sbjct: 153 TTSRDGSGNQHSQFLGIPTDPRN 175 >11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042, 5344217-5344333,5344438-5344506,5344631-5344725, 5345580-5345658,5346499-5346563,5347368-5347461, 5347675-5347744,5348363-5349357 Length = 931 Score = 27.1 bits (57), Expect = 8.6 Identities = 10/30 (33%), Positives = 15/30 (50%) Frame = +1 Query: 85 PPKVQKVMVQPINLIFRYLQNRSRVQIWLY 174 PPK QK + +Y++N R W+Y Sbjct: 506 PPKCQKTQCCANGMSLKYVKNYKRKAFWIY 535 >05_07_0342 + 29402867-29402906,29403012-29403052,29403146-29403220, 29403523-29403648,29404195-29404247,29404385-29404475 Length = 141 Score = 27.1 bits (57), Expect = 8.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 178 NVNLRIEGHIVGFDEYMNIVLDEAEE 255 N I G + GFD+ NI+LDE+ E Sbjct: 21 NDGRNIVGTLRGFDQATNIILDESHE 46 >01_07_0041 + 40688242-40688278,40688396-40688502,40688612-40688707, 40688859-40688915,40689033-40689194,40689310-40689394, 40689648-40689738,40689813-40689977,40690121-40690240, 40690330-40690402,40690482-40690650,40690741-40691651, 40691839-40691931,40692065-40692255,40692343-40692455, 40692757-40692783,40693915-40693949 Length = 843 Score = 27.1 bits (57), Expect = 8.6 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +3 Query: 87 TESSEGDGTAHQPYLPIPTEPESCAN-LAIRKREPED 194 TES++ D TAH+P + P+ + A+ L ++R P D Sbjct: 421 TESNDSDVTAHKPMMWSPSPNAAKAHPLTFQQRPPMD 457 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,863,599 Number of Sequences: 37544 Number of extensions: 229802 Number of successful extensions: 569 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 556 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 569 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1071221400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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