Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1074
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)                       53   1e-07
SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   3e-05
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)              42   3e-04
SB_57336| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          29   1.6  
SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)                   28   3.8  
SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15)                28   5.0  
SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)
          Length = 198

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
 Frame = +1

Query: 52  SQYKQKMAYKGPPKVQKVMVQPINLIFRYLQNRSRV--QIWLYEN---VNLRIEGHIVGF 216
           S+++  ++Y G P  Q     P  ++  Y  ++S V  +IW  +     + R   H  GF
Sbjct: 72  SEFEDSVSYGGRPTSQV----PGPVLSAYWSDQSAVASRIWHSQRQYKCHNRATTH--GF 125

Query: 217 DEYMNIVLDEAEEVHMKSKNRKQIGRI 297
           DEYMN+VLDEAEEVH+K+K RK + RI
Sbjct: 126 DEYMNLVLDEAEEVHLKTKTRKPLVRI 152


>SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 16/59 (27%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +1

Query: 91  KVQKVMVQPINLIFRYLQNRSRVQIWL--YENVNLRIEGHIVGFDEYMNIVLDEAEEVH 261
           K+Q   V P+++++R ++ R ++++W   Y+ +   + G+++ FD++MN+ L + +EV+
Sbjct: 143 KMQACSVGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVY 201


>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
          Length = 974

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 14/53 (26%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
 Frame = +1

Query: 109 VQPINLIFRYLQNRSRVQIWL--YENVNLRIEGHIVGFDEYMNIVLDEAEEVH 261
           V P+++++R ++ R ++++W   Y+ +   + G+++ FD++MN+ L + +EV+
Sbjct: 4   VGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVY 56


>SB_57336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 297 NDEGRQHNTHTEREPQRVSVKLGYKFAKSEVIPSK 401
           +DEG Q + HT  EP R+ ++ G K +    + +K
Sbjct: 12  DDEGDQDHEHTRVEPVRLRLRYGIKASSDHTLATK 46


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 363  LTSH*RAGVHVLYECYVVSLHHYSSYLFSVFRFHMDFFSFVENNIHVFIKTHDVSFNPQV 184
            +T H    +   +  +V+  HHY   +FS+   H  FFS + ++    I TH   F+   
Sbjct: 933  ITDHYFFSIITHHYFFVIITHHY---IFSIITHHY-FFSIITHHFFFSIITHHFFFSIIT 988

Query: 183  HVF 175
            H F
Sbjct: 989  HHF 991



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 363  LTSH*RAGVHVLYECYVVSLHHYSSYLFSVFRFHMDFFSFVENNIHVFIKTHDVSFNPQV 184
            +T H    +   +  +V+  HHY   +FS+F  H  FFS + ++    I T+   F+   
Sbjct: 1095 ITHHYFFSIITYHYFFVIITHHY---IFSIFTHHY-FFSIITHHYSFVIITYHYIFSIFT 1150

Query: 183  H 181
            H
Sbjct: 1151 H 1151


>SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)
          Length = 451

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 270 EKQKTNRKNNDEGRQHNTHTEREPQRVSVKL 362
           E +K+ +KN    ++ NT  +REP+++  ++
Sbjct: 46  ENEKSKKKNEKRKQRKNTDRKREPKQIKTRI 76


>SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15)
          Length = 392

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 255 SPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEVIPSK*QF 410
           S ++  ++   + ++DE    + HT RE QR  +K   K  + +++P+K +F
Sbjct: 236 SQFDEVEEPEGKPSDDESSSDDEHTWREEQRKQLKT--KKKEKQMVPNKLKF 285


>SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 894

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 288 RKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEVIPSK 401
           RK  D+GR H    E+E + +  KL Y+  ++E + ++
Sbjct: 549 RKERDDGRFHIQKLEKERETLHSKLLYQQMRAETLENE 586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,168
Number of Sequences: 59808
Number of extensions: 289447
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)