Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1074
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...   134   3e-32
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    40   8e-04
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    40   8e-04
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    38   0.003
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    31   0.36 
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    31   0.36 
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    31   0.63 
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    29   1.9  
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    28   3.3  
U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body prot...    28   4.4  
Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score =  134 bits (325), Expect = 3e-32
 Identities = 59/79 (74%), Positives = 73/79 (92%)
 Frame = +1

Query: 91  KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 270
           K+ KVMVQP+NLIFRYLQNR+RVQIWLYE+V  R+EG+I+GFDE+MN+V DEAEEV+MK+
Sbjct: 5   KLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64

Query: 271 KNRKQIGRIMMKGDNITLI 327
           K R +IGRI++KGDNITLI
Sbjct: 65  KGRNKIGRILLKGDNITLI 83


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 17/51 (33%), Positives = 33/51 (64%)
 Frame = +1

Query: 178 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330
           N N R+ G + GFD +MN+V+DEA E + K      +G  +++G+++ +++
Sbjct: 22  NGNRRVSGILRGFDPFMNMVIDEAVE-YQKDGGSVNLGMTVIRGNSVVIME 71


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 17/51 (33%), Positives = 33/51 (64%)
 Frame = +1

Query: 178 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330
           N N R+ G + GFD +MN+V+DEA E + K      +G  +++G+++ +++
Sbjct: 22  NGNRRVSGILRGFDPFMNMVIDEAVE-YQKDGGSVNLGMTVIRGNSVVIME 71


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +1

Query: 160 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVH--MKSKNRKQIGRIMMKGDNITLI 327
           +IW+    +  I G + GFD+Y+N+VL++  E       K   ++  I++ G++IT++
Sbjct: 25  KIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGNHITML 82


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 273 KQKTNRKNNDEGRQHNTHTEREPQR 347
           K K N +N D+G+QH    E++PQ+
Sbjct: 350 KSKRNSQNEDDGQQHQHQNEQQPQQ 374


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 273 KQKTNRKNNDEGRQHNTHTEREPQR 347
           K K N +N D+G+QH    E++PQ+
Sbjct: 350 KSKRNSQNEDDGQQHQHQNEQQPQQ 374


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +1

Query: 187 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 327
           +  +G +V  D YMN+ L  AEE ++   ++  +G I+++ +N+  +
Sbjct: 29  MEYKGVLVAVDSYMNLQLAHAEE-YIDGNSQGNLGEILIRCNNVLYV 74


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +1

Query: 199 GHIVGFDEYMNIVLDEAEEVHMKSKN-------RKQIGRIMMKGDNITLI 327
           G + GFD+ +N+VLD+  E     +N        +Q+G I+ +G  IT++
Sbjct: 36  GVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVARGTAITVV 85


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 25  FLP*FFIHESQYKQKMAYKGPPKVQKVMVQPINLIFRYLQNRS 153
           FLP F I    Y+ K     PP      V+ +N IFRY   R+
Sbjct: 431 FLPQFQIF--MYQSKPPTSSPPSGSSAQVEDVNSIFRYSTGRN 471


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 193 IEGHIVGFDEYMNIVLDEAEEVHMKSKN---RKQIGRIMMKGDNITLI 327
           I G + GFD+ +N+V+++A E             +G  +++G+N+ +I
Sbjct: 23  IVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRGENVAII 70


>U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body protein
           1, isoform b protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 306 LHHYSSYLFSVFRFHMDFFSFVENNIHVFIKTHDVSFNPQVHVFV*P 166
           ++ YSS +   +    ++ ++ E N     KT  V FNPQV + + P
Sbjct: 3   INRYSSSVSDHYDSSDEYDNYSEQNYEYVYKTRLVPFNPQVLITIPP 49


>Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical
           protein F46B6.4 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = +1

Query: 106 MVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAE-------EVHM 264
           MV     I   L  RS V  WLY N  + IE  I G     ++V++E+E         H+
Sbjct: 399 MVTKCKTIRLRLDARSPVIEWLYHNELVVIEPTIDGNYLIFDVVMNESEIGRFRKKFAHL 458

Query: 265 KSKNRKQI 288
           K KN + +
Sbjct: 459 KKKNSQSV 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,049
Number of Sequences: 27780
Number of extensions: 224218
Number of successful extensions: 657
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)