Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1074
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   1.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.6  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 53  VNTNKKWLIKAHRKFRR*WYSPSTLSSDTYRTGV 154
           +  ++KW++  + K +R W  P   +  T + G+
Sbjct: 29  ITGDEKWVVYNNIKRKRSWSRPRESAQTTSKAGI 62


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 53  VNTNKKWLIKAHRKFRR*WYSPSTLSSDTYRTGV 154
           +  ++KW++  + K +R W  P   +  T + G+
Sbjct: 150 ITGDEKWVVYNNIKRKRSWSRPREPAQTTSKAGI 183


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +3

Query: 228 EYCSRRS*RSPYEIEKQKTNRKNNDEGRQHNTH 326
           E C R S  S        TN  NN+    +N +
Sbjct: 217 ETCQRNSNNSTITAGNANTNASNNNNNNNNNNN 249


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +3

Query: 42   HSRKSIQT---KNGL*RPTESSEGDGTAHQPYLPIPTEPESCA 161
            HSR   Q+   +NG      S  G    H  + P   +P +CA
Sbjct: 1772 HSRSGSQSMPRQNGRYSRVPSQGGGSGTHNVFSPEYDDPANCA 1814


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 155 RLRFCRYRKIRLMG 114
           R ++CRY+K   MG
Sbjct: 161 RCQYCRYQKCLAMG 174


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 155 RLRFCRYRKIRLMG 114
           R ++CRY+K   MG
Sbjct: 161 RCQYCRYQKCLAMG 174


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 470 LEIEKTSNPVTVI 432
           L IE TSN +TVI
Sbjct: 116 LNIESTSNKMTVI 128


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 260 WTSSASSRTIFMYSSKPTMCP 198
           W S  +    F YSSKP   P
Sbjct: 205 WWSXXTVAXTFKYSSKPYXFP 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,054
Number of Sequences: 438
Number of extensions: 2853
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)