Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1074
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta...   126   6e-30
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta...   124   3e-29
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta...    41   5e-04
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta...    40   0.001
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati...    39   0.002
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati...    35   0.027
At2g36650.1 68415.m04495 expressed protein                             30   1.0  
At2g16640.1 68415.m01910 chloroplast outer membrane protein, put...    29   1.3  
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati...    29   2.4  
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati...    29   2.4  
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati...    28   3.1  
At5g08141.1 68418.m00950 bZIP transcription factor family protei...    27   5.4  
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa...    27   5.4  
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa...    27   5.4  
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta...    27   7.2  

>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
           putative / snRNP-E, putative / Sm protein E, putative
           similar to SWISS-PROT:P08578 small nuclear
           ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
           [Chicken]
          Length = 88

 Score =  126 bits (305), Expect = 6e-30
 Identities = 55/79 (69%), Positives = 70/79 (88%)
 Frame = +1

Query: 91  KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 270
           KVQ++M QPINLIFR+LQ+++R+QIWL+E  +LRIEG I GFDEYMN+VLDEAEEV +K 
Sbjct: 5   KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64

Query: 271 KNRKQIGRIMMKGDNITLI 327
           K RK +GRI++KGDNITL+
Sbjct: 65  KTRKPLGRILLKGDNITLM 83


>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
           putative / snRNP-E, putative / Sm protein E, putative
           similar to SWISS-PROT:P08578 small nuclear
           ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
           [Chicken]
          Length = 88

 Score =  124 bits (300), Expect = 3e-29
 Identities = 54/79 (68%), Positives = 69/79 (87%)
 Frame = +1

Query: 91  KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 270
           KVQ++M QPINLIFR+LQ+++R+QIWL+E  +LRIEG I GFDEYMN+VLDEAEEV +K 
Sbjct: 5   KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64

Query: 271 KNRKQIGRIMMKGDNITLI 327
             RK +GRI++KGDNITL+
Sbjct: 65  NTRKPLGRILLKGDNITLM 83


>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
           putative / snRNP-G, putative / Sm protein G, putative
           similar to small nuclear ribonucleoprotein G (snRNP-G,
           Sm protein G, Sm-G, SmG) [Homo sapiens]
           SWISS-PROT:Q15357
          Length = 80

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 17/66 (25%), Positives = 41/66 (62%)
 Frame = +1

Query: 133 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 312
           +Y+  + ++++    N N  + G + GFD++MN+V+D   EV+    ++  IG ++++G+
Sbjct: 12  KYMDKKLQIKL----NANRMVTGTLRGFDQFMNLVVDNTVEVN--GNDKTDIGMVVIRGN 65

Query: 313 NITLIQ 330
           +I  ++
Sbjct: 66  SIVTVE 71


>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
           putative / snRNP-G, putative / Sm protein G, putative
           similar to SWISS-PROT:Q15357 small nuclear
           ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
           [Homo sapiens]
          Length = 79

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/66 (25%), Positives = 41/66 (62%)
 Frame = +1

Query: 133 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 312
           +Y+  + ++++    N N  + G + GFD++MN+V+D   EV+    ++  IG ++++G+
Sbjct: 12  KYMDKKLQIKL----NANRMVVGTLRGFDQFMNLVVDNTVEVN--GDDKTDIGMVVIRGN 65

Query: 313 NITLIQ 330
           +I  ++
Sbjct: 66  SIVTVE 71


>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to U6
           snRNA-associated Sm-like protein LSm5 [Homo sapiens]
           SWISS-PROT:Q9Y4Y9
          Length = 88

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/58 (27%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +1

Query: 160 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLI 327
           +IW+    +  + G + GFD Y+N+VL++  E  + ++ R+  ++ +I++ G+NI ++
Sbjct: 21  KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL 78


>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to U6
           snRNA-associated Sm-like protein LSm8 [Homo sapiens]
           SWISS-PROT:O95777
          Length = 98

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +1

Query: 178 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQ---IGRIMMKGDNITLI 327
           N    I G + GFD+  NI+LDE+ E    +K   Q   +G  +++GDNI +I
Sbjct: 20  NDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72


>At2g36650.1 68415.m04495 expressed protein
          Length = 373

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 178 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKN 276
           N+   +EG +   + Y++++ +E EE+ MKS N
Sbjct: 210 NIVKELEGKVKDMEAYVDVLQEEKEELFMKSSN 242


>At2g16640.1 68415.m01910 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1206

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 264 EIEKQKTNRKNNDEGRQHNTHTEREPQRVS 353
           E+EKQ+++R + D     N+H E EP+ VS
Sbjct: 404 ELEKQQSSRVHVDPEITENSHVETEPEVVS 433


>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to U6
           snRNA-associated Sm-like protein LSm7 [Homo sapiens]
           SWISS-PROT:Q9UK45
          Length = 99

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
 Frame = +1

Query: 190 RIEGHIVGFDEYMNIVLDEAEEV---H---MKSKNR-KQIGRIMMKGDNITLI 327
           ++ G + G+D+ +N+VLDEA E    H   +K+ ++ +++G I+ +G  + L+
Sbjct: 28  QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80


>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to U6
           snRNA-associated Sm-like protein LSm7 [Homo sapiens]
           SWISS-PROT:Q9UK45
          Length = 99

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
 Frame = +1

Query: 190 RIEGHIVGFDEYMNIVLDEAEEV---H---MKSKNR-KQIGRIMMKGDNITLI 327
           ++ G + G+D+ +N+VLDEA E    H   +K+ ++ +++G I+ +G  + L+
Sbjct: 28  QVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80


>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
           LSm3 (MDS017) [Mouse]
          Length = 97

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +1

Query: 112 QPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEV 258
           +P++LI   L    R+ + L  +  LR  G +  FD+++N++L + EEV
Sbjct: 11  EPLDLI--RLSIEERIYVKLRSDRELR--GKLHAFDQHLNMILGDVEEV 55


>At5g08141.1 68418.m00950 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 137

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 169 LYENVNLRIEGHIVGFDEYM----NIVLDEAEEVHMKSKNRKQIGRIMMK 306
           L++  ++ ++ H+   D+Y     N+V DE + +   + NR+   R  M+
Sbjct: 6   LHDEDDVHVQDHVYNHDQYHHQQPNVVTDEEKRLRRMASNRESARRTRMR 55


>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/54 (22%), Positives = 31/54 (57%), Gaps = 11/54 (20%)
 Frame = +1

Query: 190 RIEGHIVGFDEYMNIVLDEAEE-----------VHMKSKNRKQIGRIMMKGDNI 318
           ++ G  + FD +MN+VL + EE           ++ + ++R+ +G ++++G+ +
Sbjct: 26  QLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEV 79


>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/54 (22%), Positives = 31/54 (57%), Gaps = 11/54 (20%)
 Frame = +1

Query: 190 RIEGHIVGFDEYMNIVLDEAEE-----------VHMKSKNRKQIGRIMMKGDNI 318
           ++ G  + FD +MN+VL + EE           ++ + ++R+ +G ++++G+ +
Sbjct: 26  QLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEV 79


>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
           putative / snRNP-F, putative / Sm protein F, putative
           similar to SWISS-PROT:Q15356 small nuclear
           ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
           [Mouse]
          Length = 88

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = +1

Query: 187 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 330
           +  +G +   D YMN+ L   EE ++  +    +G I+++ +N+  ++
Sbjct: 28  MEYKGFLASVDSYMNLQLGNTEE-YIDGQLTGNLGEILIRCNNVLYVR 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,415
Number of Sequences: 28952
Number of extensions: 197494
Number of successful extensions: 557
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)