Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1073
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.57 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    28   1.3  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   3.1  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.1  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.0  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   4.0  
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    26   4.0  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    26   5.3  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    26   5.3  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.1  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.1  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.3  
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    25   9.3  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 119 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 27
           AR  F   +F V+  N   DCN TPH   +S
Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 535  PSALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQAS--KEHRPRPLSKQTQVLQSL 365
            P + HL LL+ + H     +S  W S +FL    L +A   ++     +SKQ   L+S+
Sbjct: 964  PESDHLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLESV 1022


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 91  KVEP*NAVLAQKAHVQQSK-NQKTNRVR*QQMTRLPSKKCSRKWNAWREP 237
           +V+P NA+     HV   K +   NR   Q++    SKKC  +W +  EP
Sbjct: 19  EVQP-NALRPVAFHVFTRKYDLNINRDSLQELASFVSKKCGSQWRSQCEP 67


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 573 CVQCRLRHYKCRIHRHCTYNCYTGSTTTI 487
           C+ CR R  KC  +R C +NC+      I
Sbjct: 26  CLYCRRRKIKCDKNRPC-HNCFVAKRECI 53


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 204 MQSEVECLAGTEWES 248
           +Q+ VEC+AGT+W S
Sbjct: 606 VQALVECVAGTDWSS 620


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 402 LGLCSLDACRRSSTPKKFELIQGRECAPG 488
           L L +L  CR S   K  E+  G +CA G
Sbjct: 89  LALQALKHCRESLPNKSIEIDMGNQCASG 117


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 39  EMRCLIAICFIVLARHCESGALKCSP 116
           +M   +A+  I++ RH  S AL+CSP
Sbjct: 43  DMDAKMALASILIKRHLVSTALECSP 68


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 573 CVQCRLRHYKCRIHRHCTYNC 511
           C+ CR R  KC   +   YNC
Sbjct: 46  CLTCRKRRIKCDERKPICYNC 66


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 348 PGTSFQRDCNTCVCLDNGL 404
           P TSF  D N CV  D+GL
Sbjct: 236 PATSFIYDFNACVFCDDGL 254


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 586 FGSIMCSVQASSLQMPYPSALHLQLLHWFDH 494
           F SI+C +   +L +  P +++   LH+F H
Sbjct: 35  FYSILCFLSFFALLLHLPCSIYSHTLHFFHH 65


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 62  LFYRFGATLRKWS 100
           +FYRFG ++R WS
Sbjct: 528 IFYRFGKSIRAWS 540


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 523 AMPMDTAFVVTKPALNTLSSQRKN 594
           A P DT  + TKP  NTL S  K+
Sbjct: 622 APPADTKKIKTKPKSNTLGSMFKS 645


>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 214 KWNAWREPSGRATATSAGALI 276
           KWNAW E  G++   +A   I
Sbjct: 54  KWNAWEELKGKSKEDAASEYI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,408
Number of Sequences: 5004
Number of extensions: 62717
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)