BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1073 (645 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 29 0.57 SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.3 SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 3.1 SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.1 SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.0 SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 26 4.0 SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe... 26 4.0 SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 26 5.3 SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 26 5.3 SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.1 SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.1 SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 9.3 SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 25 9.3 >SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1|||Manual Length = 881 Score = 29.1 bits (62), Expect = 0.57 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 119 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 27 AR F +F V+ N DCN TPH +S Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319 >SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|Schizosaccharomyces pombe|chr 2|||Manual Length = 1173 Score = 27.9 bits (59), Expect = 1.3 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -3 Query: 535 PSALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQAS--KEHRPRPLSKQTQVLQSL 365 P + HL LL+ + H +S W S +FL L +A ++ +SKQ L+S+ Sbjct: 964 PESDHLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLESV 1022 >SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 594 Score = 26.6 bits (56), Expect = 3.1 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +1 Query: 91 KVEP*NAVLAQKAHVQQSK-NQKTNRVR*QQMTRLPSKKCSRKWNAWREP 237 +V+P NA+ HV K + NR Q++ SKKC +W + EP Sbjct: 19 EVQP-NALRPVAFHVFTRKYDLNINRDSLQELASFVSKKCGSQWRSQCEP 67 >SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 632 Score = 26.6 bits (56), Expect = 3.1 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -1 Query: 573 CVQCRLRHYKCRIHRHCTYNCYTGSTTTI 487 C+ CR R KC +R C +NC+ I Sbjct: 26 CLYCRRRKIKCDKNRPC-HNCFVAKRECI 53 >SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1877 Score = 26.2 bits (55), Expect = 4.0 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +3 Query: 204 MQSEVECLAGTEWES 248 +Q+ VEC+AGT+W S Sbjct: 606 VQALVECVAGTDWSS 620 >SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 26.2 bits (55), Expect = 4.0 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +3 Query: 402 LGLCSLDACRRSSTPKKFELIQGRECAPG 488 L L +L CR S K E+ G +CA G Sbjct: 89 LALQALKHCRESLPNKSIEIDMGNQCASG 117 >SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7|Schizosaccharomyces pombe|chr 1|||Manual Length = 258 Score = 26.2 bits (55), Expect = 4.0 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3 Query: 39 EMRCLIAICFIVLARHCESGALKCSP 116 +M +A+ I++ RH S AL+CSP Sbjct: 43 DMDAKMALASILIKRHLVSTALECSP 68 >SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster type|Schizosaccharomyces pombe|chr 2|||Manual Length = 419 Score = 25.8 bits (54), Expect = 5.3 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = -1 Query: 573 CVQCRLRHYKCRIHRHCTYNC 511 C+ CR R KC + YNC Sbjct: 46 CLTCRKRRIKCDERKPICYNC 66 >SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 338 Score = 25.8 bits (54), Expect = 5.3 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +3 Query: 348 PGTSFQRDCNTCVCLDNGL 404 P TSF D N CV D+GL Sbjct: 236 PATSFIYDFNACVFCDDGL 254 >SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 176 Score = 25.4 bits (53), Expect = 7.1 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = -3 Query: 586 FGSIMCSVQASSLQMPYPSALHLQLLHWFDH 494 F SI+C + +L + P +++ LH+F H Sbjct: 35 FYSILCFLSFFALLLHLPCSIYSHTLHFFHH 65 >SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 25.4 bits (53), Expect = 7.1 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +2 Query: 62 LFYRFGATLRKWS 100 +FYRFG ++R WS Sbjct: 528 IFYRFGKSIRAWS 540 >SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr 3|||Manual Length = 1516 Score = 25.0 bits (52), Expect = 9.3 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +1 Query: 523 AMPMDTAFVVTKPALNTLSSQRKN 594 A P DT + TKP NTL S K+ Sbjct: 622 APPADTKKIKTKPKSNTLGSMFKS 645 >SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 87 Score = 25.0 bits (52), Expect = 9.3 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +1 Query: 214 KWNAWREPSGRATATSAGALI 276 KWNAW E G++ +A I Sbjct: 54 KWNAWEELKGKSKEDAASEYI 74 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,895,408 Number of Sequences: 5004 Number of extensions: 62717 Number of successful extensions: 220 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 220 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 289756512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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