Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1073
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0592 + 30465956-30466210,30466401-30466529,30466631-304667... 31 1.0
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 30 1.8
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 29 2.4
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 29 2.4
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 3.2
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484 29 4.2
11_01_0385 + 2915532-2916482 28 5.5
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 5.5
06_03_0919 - 25939176-25940441 28 5.5
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 5.5
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 28 5.5
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 28 7.3
10_07_0157 - 13556708-13556813,13556831-13557001,13559558-135597... 27 9.7
07_03_0898 - 22403337-22404950 27 9.7
07_03_0896 + 22373348-22374946 27 9.7
06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503 27 9.7
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 27 9.7
03_03_0041 - 14007687-14009381 27 9.7
03_02_0032 + 5143223-5143238,5143477-5143526,5144077-5144173,514... 27 9.7
02_02_0637 - 12491706-12492575,12492580-12492657 27 9.7
>01_06_0592 +
30465956-30466210,30466401-30466529,30466631-30466760,
30466861-30466981,30467111-30467192,30467334-30467384,
30467836-30467929,30468046-30468173
Length = 329
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = +1
Query: 124 KAHVQQSKNQKTNRVR*QQMTRLPSKKCSRKWNAWREPSGRATATSAGALIQESPSA*GR 303
K H + + VR +TR R W+ R SGR T A+ ESPS+ G
Sbjct: 16 KFHCSSTPTPCSGSVRRWAITRFAGAGRRRDWHRRRRTSGRGVLT-VSAVAAESPSSGG- 73
Query: 304 TAVIKLYLLNLCVVSQAPPSR 366
V + Y L V+ A P +
Sbjct: 74 -GVAEDYYAVLGVMPDATPQQ 93
>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
Length = 478
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 75 LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 200
+A E +K P +GP A S+ K ++ DDA AV+
Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241
>10_08_0663 -
19666476-19667017,19667664-19667755,19668039-19668095,
19668304-19668447,19668567-19668613,19668733-19668791,
19668975-19669045,19669274-19669341,19669431-19669598,
19669885-19669944,19670075-19670251
Length = 494
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +3
Query: 129 PCAAEQESKDKPSQITTDDA--SAVQEMQSEVEC-LAGTEWESNC-HFCRCSDSGVAECL 296
PC S D P+ I+ + + V + SE+ C L + + S+ CRCSD + +
Sbjct: 379 PCMLNTRSVDSPATISKAEIRRNRVAAVSSELVCPLTCSPFPSSALPTCRCSDDDPCDAI 438
Query: 297 RQDSCDQIIFTEPVRC 344
++ +P C
Sbjct: 439 ETQDGSEVQSPQPSHC 454
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +3
Query: 219 ECLAGTEWESNCHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNT-CVCLD 395
EC A + CH C + E +R+++ + I+ P+ QP + NT V D
Sbjct: 117 ECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQP--KIENSPNTVTVRKD 174
Query: 396 NGLGLCSLDACRRSSTPKKFELIQGR-ECAPGSSWSNQCNSCRC 524
N + + + +K E ++ EC + ++ +CRC
Sbjct: 175 NSEAIPPIPKHNKGCHCRKSECLKKYCECFQANILCSK--NCRC 216
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 424 ASKEHRPRPLSKQTQVLQSLWKEVPG 347
+S + PR + +++Q++WKEVPG
Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380
>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
Length = 519
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 250 LLSHSVPARHSTSDCISWTADASSVVI*LGLSFDSCSAAHGPSVPGLHFRAPLSQCR 80
+L + RH+ D + D LGL ++C+ HG S P L + +C+
Sbjct: 272 MLMDIIKTRHANKDVAGYGNDL------LGLMLEACAPEHGESCPQLSMDEIIDECK 322
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 402 LGLCSLDACRRSSTPKKFELIQGRECAPGSSWS 500
L + SL ACR +T + + G+ AP WS
Sbjct: 24 LAIASLSACRVDATSRSLLVTGGQAAAPAPVWS 56
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 330 EPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSSWS 500
EP G F+ +TC+ G+GL + A + S P++ L R P + S
Sbjct: 42 EPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRRRLLPPPRSPPPAPTKS 98
>06_03_0919 - 25939176-25940441
Length = 421
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Frame = -3
Query: 553 SLQMPYPSALHLQL-LHWFDHDDPGAH-----SLPWISSNFLGV 440
SL++P P+ LQL L+W+ PG H SL W++ N L V
Sbjct: 169 SLELP-PATAELQLRLYWYAVRPPGLHGPGVASLRWLARNGLAV 211
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 89 RKWSPKMQSWHRRPMCSRARIKRQTESDNNR 181
R+ S K W+R +R R+K T SD R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607
>01_06_0807 +
32125987-32126029,32126030-32126208,32126760-32126943,
32127714-32127788,32128079-32128188,32128747-32128965,
32129124-32129279,32129759-32129911,32130223-32130349,
32131598-32131728,32131858-32132139
Length = 552
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 577 IMCSVQASSLQM-PYPSALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQ--ASKEHR 407
++ A +LQ+ PY Q LH H DP A WI+S +GVD L HR
Sbjct: 312 LVARAHAHNLQVHPYTYRNENQFLHLNFHQDPYAEYDFWINS--MGVDGLFTDFTGSLHR 369
Query: 406 PRPLSKQTQVL 374
+ L +T+ +
Sbjct: 370 YQELFLETKFI 380
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 27.9 bits (59), Expect = 7.3
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Frame = +3
Query: 57 AICFIVLARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGT 236
A F A + + S G + P + +K + +ASA + + EC+
Sbjct: 196 ASAFDFRASYVTTDEFMASNGGQLPLVLDWAIGNKTCEEAKRNASAYACVSANSECVDSR 255
Query: 237 EWESNCHFCRCS---DSG---VAECLRQDSCDQIIFTEPVRCQPGTSFQRDCN-TCVCLD 395
+ C CS D + C + CD+ F P PGT TC C D
Sbjct: 256 YGRGRGYLCNCSAGYDGNPYLLDGCQDINECDESRFRYPCSV-PGTCVNTPGGFTCTCPD 314
Query: 396 NGLG 407
+G
Sbjct: 315 KTIG 318
>10_07_0157 -
13556708-13556813,13556831-13557001,13559558-13559757,
13559809-13559835
Length = 167
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 271 EHLQKWQLLSHSVPARHSTSDCISWTADASS 179
EHLQKW+ + + PA +S S + + SS
Sbjct: 80 EHLQKWESAALNAPAHYSVSVAVCRSNGESS 110
>07_03_0898 - 22403337-22404950
Length = 537
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 84 HCESGA-LKCSPGTEGPCA 137
HC +GA CSPG PCA
Sbjct: 69 HCTAGADPSCSPGAASPCA 87
>07_03_0896 + 22373348-22374946
Length = 532
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 84 HCESGA-LKCSPGTEGPCA 137
HC +GA CSPG PCA
Sbjct: 70 HCTAGADPSCSPGAASPCA 88
>06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503
Length = 186
Score = 27.5 bits (58), Expect = 9.7
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Frame = +3
Query: 321 IFTEPVRCQPGTSFQRDCNTCVCLDNGLGLCS-LDACRR---SSTPKKFELIQGRE--CA 482
I E C P TS + N+C C+ L C+ S P L + C
Sbjct: 23 IHVEAKSCCPSTSARNVYNSCRFAGGSREACAKLSTCKHFDGSCQPPYDHLTLNYDGGCC 82
Query: 483 PGSSWSNQCNSCRCNADGYGICS 551
P S+ N SCR Y C+
Sbjct: 83 PSSTARNIYTSCRFVGGSYDSCA 105
>04_04_1189 +
31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 27.5 bits (58), Expect = 9.7
Identities = 29/103 (28%), Positives = 42/103 (40%)
Frame = -3
Query: 532 SALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQASKEHRPRPLSKQTQVLQSLWKEV 353
S HLQ+L+ H G+H +P +N + + L+ K HR LQ L +V
Sbjct: 671 SFYHLQVLNVGIH---GSHDVPTSMNNLVNLRHLIAHDKVHRAIAGVGNMSSLQELNFKV 727
Query: 352 PG*QRTGSVNII*SQLSCLKHSATPESEHLQKWQLLSHSVPAR 224
Q G I QL + T E HL+ + + AR
Sbjct: 728 ---QNVGGFEI--RQLQSMNKLVTLEISHLENVKTKDEASGAR 765
>03_03_0041 - 14007687-14009381
Length = 564
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 538 YPSALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQASKEH 410
+P+ + L L H DP L ++SS+ D A EH
Sbjct: 66 HPACVRLTLSHLLPSPDPSLRFLRFLSSHLPAAPDAAPAEPEH 108
>03_02_0032 +
5143223-5143238,5143477-5143526,5144077-5144173,
5145272-5145559,5146161-5146402
Length = 230
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 288 RRLLNQSTCRSGSCSPTRFPPGIPLPTA 205
RRL N +C S S + PP P PT+
Sbjct: 181 RRLRNPLSCFSSISSQRQLPPSSPFPTS 208
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/60 (36%), Positives = 27/60 (45%)
Frame = +1
Query: 346 SQAPPSRGIVTLASA*ITVWAYAPWMPVEDRQLPRSLS*SRAENALRDRRGRTSVTVVGA 525
S+ P+R T S W PW+P P S S S + A R RR R+S V GA
Sbjct: 116 SRRSPARATSTTHSPFCHSWRTTPWLPTSCSS-PTS-STSPSARATRPRRSRSS-PVFGA 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,338,935
Number of Sequences: 37544
Number of extensions: 487723
Number of successful extensions: 1622
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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