BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1073 (645 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0592 + 30465956-30466210,30466401-30466529,30466631-304667... 31 1.0 06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 30 1.8 10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 29 2.4 02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 29 2.4 05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 3.2 07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484 29 4.2 11_01_0385 + 2915532-2916482 28 5.5 08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 5.5 06_03_0919 - 25939176-25940441 28 5.5 04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 5.5 01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 28 5.5 02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 28 7.3 10_07_0157 - 13556708-13556813,13556831-13557001,13559558-135597... 27 9.7 07_03_0898 - 22403337-22404950 27 9.7 07_03_0896 + 22373348-22374946 27 9.7 06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503 27 9.7 04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 27 9.7 03_03_0041 - 14007687-14009381 27 9.7 03_02_0032 + 5143223-5143238,5143477-5143526,5144077-5144173,514... 27 9.7 02_02_0637 - 12491706-12492575,12492580-12492657 27 9.7 >01_06_0592 + 30465956-30466210,30466401-30466529,30466631-30466760, 30466861-30466981,30467111-30467192,30467334-30467384, 30467836-30467929,30468046-30468173 Length = 329 Score = 30.7 bits (66), Expect = 1.0 Identities = 25/81 (30%), Positives = 34/81 (41%) Frame = +1 Query: 124 KAHVQQSKNQKTNRVR*QQMTRLPSKKCSRKWNAWREPSGRATATSAGALIQESPSA*GR 303 K H + + VR +TR R W+ R SGR T A+ ESPS+ G Sbjct: 16 KFHCSSTPTPCSGSVRRWAITRFAGAGRRRDWHRRRRTSGRGVLT-VSAVAAESPSSGG- 73 Query: 304 TAVIKLYLLNLCVVSQAPPSR 366 V + Y L V+ A P + Sbjct: 74 -GVAEDYYAVLGVMPDATPQQ 93 >06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 Length = 478 Score = 29.9 bits (64), Expect = 1.8 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +3 Query: 75 LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 200 +A E +K P +GP A S+ K ++ DDA AV+ Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241 >10_08_0663 - 19666476-19667017,19667664-19667755,19668039-19668095, 19668304-19668447,19668567-19668613,19668733-19668791, 19668975-19669045,19669274-19669341,19669431-19669598, 19669885-19669944,19670075-19670251 Length = 494 Score = 29.5 bits (63), Expect = 2.4 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Frame = +3 Query: 129 PCAAEQESKDKPSQITTDDA--SAVQEMQSEVEC-LAGTEWESNC-HFCRCSDSGVAECL 296 PC S D P+ I+ + + V + SE+ C L + + S+ CRCSD + + Sbjct: 379 PCMLNTRSVDSPATISKAEIRRNRVAAVSSELVCPLTCSPFPSSALPTCRCSDDDPCDAI 438 Query: 297 RQDSCDQIIFTEPVRC 344 ++ +P C Sbjct: 439 ETQDGSEVQSPQPSHC 454 >02_02_0421 - 10042184-10042197,10042442-10042822,10044158-10044261, 10044634-10044734,10044806-10045147,10045981-10046158, 10047696-10047776,10049190-10049449 Length = 486 Score = 29.5 bits (63), Expect = 2.4 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%) Frame = +3 Query: 219 ECLAGTEWESNCHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNT-CVCLD 395 EC A + CH C + E +R+++ + I+ P+ QP + NT V D Sbjct: 117 ECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQP--KIENSPNTVTVRKD 174 Query: 396 NGLGLCSLDACRRSSTPKKFELIQGR-ECAPGSSWSNQCNSCRC 524 N + + + +K E ++ EC + ++ +CRC Sbjct: 175 NSEAIPPIPKHNKGCHCRKSECLKKYCECFQANILCSK--NCRC 216 >05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524, 3550624-3550752,3550813-3550869 Length = 599 Score = 29.1 bits (62), Expect = 3.2 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -3 Query: 424 ASKEHRPRPLSKQTQVLQSLWKEVPG 347 +S + PR + +++Q++WKEVPG Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380 >07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484 Length = 519 Score = 28.7 bits (61), Expect = 4.2 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = -3 Query: 250 LLSHSVPARHSTSDCISWTADASSVVI*LGLSFDSCSAAHGPSVPGLHFRAPLSQCR 80 +L + RH+ D + D LGL ++C+ HG S P L + +C+ Sbjct: 272 MLMDIIKTRHANKDVAGYGNDL------LGLMLEACAPEHGESCPQLSMDEIIDECK 322 >11_01_0385 + 2915532-2916482 Length = 316 Score = 28.3 bits (60), Expect = 5.5 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +3 Query: 402 LGLCSLDACRRSSTPKKFELIQGRECAPGSSWS 500 L + SL ACR +T + + G+ AP WS Sbjct: 24 LAIASLSACRVDATSRSLLVTGGQAAAPAPVWS 56 >08_02_0702 - 20179838-20180040,20180397-20180464,20180642-20180970, 20181058-20181258,20181369-20181501,20181576-20181619, 20181694-20181753,20181872-20181931,20182840-20182921, 20183292-20183368,20183649-20183726,20183997-20184143, 20184189-20184254,20184376-20184417,20184513-20184992 Length = 689 Score = 28.3 bits (60), Expect = 5.5 Identities = 16/57 (28%), Positives = 25/57 (43%) Frame = +3 Query: 330 EPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSSWS 500 EP G F+ +TC+ G+GL + A + S P++ L R P + S Sbjct: 42 EPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRRRLLPPPRSPPPAPTKS 98 >06_03_0919 - 25939176-25940441 Length = 421 Score = 28.3 bits (60), Expect = 5.5 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%) Frame = -3 Query: 553 SLQMPYPSALHLQL-LHWFDHDDPGAH-----SLPWISSNFLGV 440 SL++P P+ LQL L+W+ PG H SL W++ N L V Sbjct: 169 SLELP-PATAELQLRLYWYAVRPPGLHGPGVASLRWLARNGLAV 211 >04_04_1229 - 31906854-31907300,31907986-31908181,31908631-31908756, 31909962-31910329,31910680-31910835,31910968-31911168, 31911230-31911375,31911439-31911865,31912527-31912627, 31913197-31913254 Length = 741 Score = 28.3 bits (60), Expect = 5.5 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +2 Query: 89 RKWSPKMQSWHRRPMCSRARIKRQTESDNNR 181 R+ S K W+R +R R+K T SD R Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607 >01_06_0807 + 32125987-32126029,32126030-32126208,32126760-32126943, 32127714-32127788,32128079-32128188,32128747-32128965, 32129124-32129279,32129759-32129911,32130223-32130349, 32131598-32131728,32131858-32132139 Length = 552 Score = 28.3 bits (60), Expect = 5.5 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Frame = -3 Query: 577 IMCSVQASSLQM-PYPSALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQ--ASKEHR 407 ++ A +LQ+ PY Q LH H DP A WI+S +GVD L HR Sbjct: 312 LVARAHAHNLQVHPYTYRNENQFLHLNFHQDPYAEYDFWINS--MGVDGLFTDFTGSLHR 369 Query: 406 PRPLSKQTQVL 374 + L +T+ + Sbjct: 370 YQELFLETKFI 380 >02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 Length = 740 Score = 27.9 bits (59), Expect = 7.3 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 7/124 (5%) Frame = +3 Query: 57 AICFIVLARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGT 236 A F A + + S G + P + +K + +ASA + + EC+ Sbjct: 196 ASAFDFRASYVTTDEFMASNGGQLPLVLDWAIGNKTCEEAKRNASAYACVSANSECVDSR 255 Query: 237 EWESNCHFCRCS---DSG---VAECLRQDSCDQIIFTEPVRCQPGTSFQRDCN-TCVCLD 395 + C CS D + C + CD+ F P PGT TC C D Sbjct: 256 YGRGRGYLCNCSAGYDGNPYLLDGCQDINECDESRFRYPCSV-PGTCVNTPGGFTCTCPD 314 Query: 396 NGLG 407 +G Sbjct: 315 KTIG 318 >10_07_0157 - 13556708-13556813,13556831-13557001,13559558-13559757, 13559809-13559835 Length = 167 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 271 EHLQKWQLLSHSVPARHSTSDCISWTADASS 179 EHLQKW+ + + PA +S S + + SS Sbjct: 80 EHLQKWESAALNAPAHYSVSVAVCRSNGESS 110 >07_03_0898 - 22403337-22404950 Length = 537 Score = 27.5 bits (58), Expect = 9.7 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%) Frame = +3 Query: 84 HCESGA-LKCSPGTEGPCA 137 HC +GA CSPG PCA Sbjct: 69 HCTAGADPSCSPGAASPCA 87 >07_03_0896 + 22373348-22374946 Length = 532 Score = 27.5 bits (58), Expect = 9.7 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%) Frame = +3 Query: 84 HCESGA-LKCSPGTEGPCA 137 HC +GA CSPG PCA Sbjct: 70 HCTAGADPSCSPGAASPCA 88 >06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503 Length = 186 Score = 27.5 bits (58), Expect = 9.7 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 6/83 (7%) Frame = +3 Query: 321 IFTEPVRCQPGTSFQRDCNTCVCLDNGLGLCS-LDACRR---SSTPKKFELIQGRE--CA 482 I E C P TS + N+C C+ L C+ S P L + C Sbjct: 23 IHVEAKSCCPSTSARNVYNSCRFAGGSREACAKLSTCKHFDGSCQPPYDHLTLNYDGGCC 82 Query: 483 PGSSWSNQCNSCRCNADGYGICS 551 P S+ N SCR Y C+ Sbjct: 83 PSSTARNIYTSCRFVGGSYDSCA 105 >04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534, 31587535-31588097,31588250-31589913,31589956-31590066, 31590152-31591181,31591234-31591406,31591535-31591814, 31592275-31592331 Length = 1434 Score = 27.5 bits (58), Expect = 9.7 Identities = 29/103 (28%), Positives = 42/103 (40%) Frame = -3 Query: 532 SALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQASKEHRPRPLSKQTQVLQSLWKEV 353 S HLQ+L+ H G+H +P +N + + L+ K HR LQ L +V Sbjct: 671 SFYHLQVLNVGIH---GSHDVPTSMNNLVNLRHLIAHDKVHRAIAGVGNMSSLQELNFKV 727 Query: 352 PG*QRTGSVNII*SQLSCLKHSATPESEHLQKWQLLSHSVPAR 224 Q G I QL + T E HL+ + + AR Sbjct: 728 ---QNVGGFEI--RQLQSMNKLVTLEISHLENVKTKDEASGAR 765 >03_03_0041 - 14007687-14009381 Length = 564 Score = 27.5 bits (58), Expect = 9.7 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = -3 Query: 538 YPSALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQASKEH 410 +P+ + L L H DP L ++SS+ D A EH Sbjct: 66 HPACVRLTLSHLLPSPDPSLRFLRFLSSHLPAAPDAAPAEPEH 108 >03_02_0032 + 5143223-5143238,5143477-5143526,5144077-5144173, 5145272-5145559,5146161-5146402 Length = 230 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -1 Query: 288 RRLLNQSTCRSGSCSPTRFPPGIPLPTA 205 RRL N +C S S + PP P PT+ Sbjct: 181 RRLRNPLSCFSSISSQRQLPPSSPFPTS 208 >02_02_0637 - 12491706-12492575,12492580-12492657 Length = 315 Score = 27.5 bits (58), Expect = 9.7 Identities = 22/60 (36%), Positives = 27/60 (45%) Frame = +1 Query: 346 SQAPPSRGIVTLASA*ITVWAYAPWMPVEDRQLPRSLS*SRAENALRDRRGRTSVTVVGA 525 S+ P+R T S W PW+P P S S S + A R RR R+S V GA Sbjct: 116 SRRSPARATSTTHSPFCHSWRTTPWLPTSCSS-PTS-STSPSARATRPRRSRSS-PVFGA 172 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,338,935 Number of Sequences: 37544 Number of extensions: 487723 Number of successful extensions: 1622 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1621 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1596695220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -