SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1073
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0592 + 30465956-30466210,30466401-30466529,30466631-304667...    31   1.0  
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796           30   1.8  
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680...    29   2.4  
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442...    29   2.4  
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355...    29   3.2  
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484     29   4.2  
11_01_0385 + 2915532-2916482                                           28   5.5  
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809...    28   5.5  
06_03_0919 - 25939176-25940441                                         28   5.5  
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    28   5.5  
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269...    28   5.5  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     28   7.3  
10_07_0157 - 13556708-13556813,13556831-13557001,13559558-135597...    27   9.7  
07_03_0898 - 22403337-22404950                                         27   9.7  
07_03_0896 + 22373348-22374946                                         27   9.7  
06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503     27   9.7  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    27   9.7  
03_03_0041 - 14007687-14009381                                         27   9.7  
03_02_0032 + 5143223-5143238,5143477-5143526,5144077-5144173,514...    27   9.7  
02_02_0637 - 12491706-12492575,12492580-12492657                       27   9.7  

>01_06_0592 +
           30465956-30466210,30466401-30466529,30466631-30466760,
           30466861-30466981,30467111-30467192,30467334-30467384,
           30467836-30467929,30468046-30468173
          Length = 329

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 25/81 (30%), Positives = 34/81 (41%)
 Frame = +1

Query: 124 KAHVQQSKNQKTNRVR*QQMTRLPSKKCSRKWNAWREPSGRATATSAGALIQESPSA*GR 303
           K H   +    +  VR   +TR       R W+  R  SGR   T   A+  ESPS+ G 
Sbjct: 16  KFHCSSTPTPCSGSVRRWAITRFAGAGRRRDWHRRRRTSGRGVLT-VSAVAAESPSSGG- 73

Query: 304 TAVIKLYLLNLCVVSQAPPSR 366
             V + Y   L V+  A P +
Sbjct: 74  -GVAEDYYAVLGVMPDATPQQ 93


>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
          Length = 478

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 75  LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 200
           +A   E   +K  P  +GP  A   S+ K  ++  DDA AV+
Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241


>10_08_0663 -
           19666476-19667017,19667664-19667755,19668039-19668095,
           19668304-19668447,19668567-19668613,19668733-19668791,
           19668975-19669045,19669274-19669341,19669431-19669598,
           19669885-19669944,19670075-19670251
          Length = 494

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +3

Query: 129 PCAAEQESKDKPSQITTDDA--SAVQEMQSEVEC-LAGTEWESNC-HFCRCSDSGVAECL 296
           PC     S D P+ I+  +   + V  + SE+ C L  + + S+    CRCSD    + +
Sbjct: 379 PCMLNTRSVDSPATISKAEIRRNRVAAVSSELVCPLTCSPFPSSALPTCRCSDDDPCDAI 438

Query: 297 RQDSCDQIIFTEPVRC 344
                 ++   +P  C
Sbjct: 439 ETQDGSEVQSPQPSHC 454


>02_02_0421 -
           10042184-10042197,10042442-10042822,10044158-10044261,
           10044634-10044734,10044806-10045147,10045981-10046158,
           10047696-10047776,10049190-10049449
          Length = 486

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
 Frame = +3

Query: 219 ECLAGTEWESNCHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNT-CVCLD 395
           EC A   +   CH   C +    E +R+++ + I+   P+  QP    +   NT  V  D
Sbjct: 117 ECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQP--KIENSPNTVTVRKD 174

Query: 396 NGLGLCSLDACRRSSTPKKFELIQGR-ECAPGSSWSNQCNSCRC 524
           N   +  +    +    +K E ++   EC   +   ++  +CRC
Sbjct: 175 NSEAIPPIPKHNKGCHCRKSECLKKYCECFQANILCSK--NCRC 216


>05_01_0445 +
           3547176-3547577,3548625-3549557,3550246-3550524,
           3550624-3550752,3550813-3550869
          Length = 599

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 424 ASKEHRPRPLSKQTQVLQSLWKEVPG 347
           +S +  PR   +  +++Q++WKEVPG
Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380


>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
          Length = 519

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 250 LLSHSVPARHSTSDCISWTADASSVVI*LGLSFDSCSAAHGPSVPGLHFRAPLSQCR 80
           +L   +  RH+  D   +  D       LGL  ++C+  HG S P L     + +C+
Sbjct: 272 MLMDIIKTRHANKDVAGYGNDL------LGLMLEACAPEHGESCPQLSMDEIIDECK 322


>11_01_0385 + 2915532-2916482
          Length = 316

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 402 LGLCSLDACRRSSTPKKFELIQGRECAPGSSWS 500
           L + SL ACR  +T +   +  G+  AP   WS
Sbjct: 24  LAIASLSACRVDATSRSLLVTGGQAAAPAPVWS 56


>08_02_0702 -
           20179838-20180040,20180397-20180464,20180642-20180970,
           20181058-20181258,20181369-20181501,20181576-20181619,
           20181694-20181753,20181872-20181931,20182840-20182921,
           20183292-20183368,20183649-20183726,20183997-20184143,
           20184189-20184254,20184376-20184417,20184513-20184992
          Length = 689

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 330 EPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSSWS 500
           EP     G  F+   +TC+    G+GL  + A +  S P++  L   R   P  + S
Sbjct: 42  EPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRRRLLPPPRSPPPAPTKS 98


>06_03_0919 - 25939176-25940441
          Length = 421

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
 Frame = -3

Query: 553 SLQMPYPSALHLQL-LHWFDHDDPGAH-----SLPWISSNFLGV 440
           SL++P P+   LQL L+W+    PG H     SL W++ N L V
Sbjct: 169 SLELP-PATAELQLRLYWYAVRPPGLHGPGVASLRWLARNGLAV 211


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 89  RKWSPKMQSWHRRPMCSRARIKRQTESDNNR 181
           R+ S K   W+R    +R R+K  T SD  R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607


>01_06_0807 +
           32125987-32126029,32126030-32126208,32126760-32126943,
           32127714-32127788,32128079-32128188,32128747-32128965,
           32129124-32129279,32129759-32129911,32130223-32130349,
           32131598-32131728,32131858-32132139
          Length = 552

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 577 IMCSVQASSLQM-PYPSALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQ--ASKEHR 407
           ++    A +LQ+ PY      Q LH   H DP A    WI+S  +GVD L        HR
Sbjct: 312 LVARAHAHNLQVHPYTYRNENQFLHLNFHQDPYAEYDFWINS--MGVDGLFTDFTGSLHR 369

Query: 406 PRPLSKQTQVL 374
            + L  +T+ +
Sbjct: 370 YQELFLETKFI 380


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
 Frame = +3

Query: 57  AICFIVLARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGT 236
           A  F   A +  +     S G + P   +    +K  +    +ASA   + +  EC+   
Sbjct: 196 ASAFDFRASYVTTDEFMASNGGQLPLVLDWAIGNKTCEEAKRNASAYACVSANSECVDSR 255

Query: 237 EWESNCHFCRCS---DSG---VAECLRQDSCDQIIFTEPVRCQPGTSFQRDCN-TCVCLD 395
                 + C CS   D     +  C   + CD+  F  P    PGT        TC C D
Sbjct: 256 YGRGRGYLCNCSAGYDGNPYLLDGCQDINECDESRFRYPCSV-PGTCVNTPGGFTCTCPD 314

Query: 396 NGLG 407
             +G
Sbjct: 315 KTIG 318


>10_07_0157 -
           13556708-13556813,13556831-13557001,13559558-13559757,
           13559809-13559835
          Length = 167

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 271 EHLQKWQLLSHSVPARHSTSDCISWTADASS 179
           EHLQKW+  + + PA +S S  +  +   SS
Sbjct: 80  EHLQKWESAALNAPAHYSVSVAVCRSNGESS 110


>07_03_0898 - 22403337-22404950
          Length = 537

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 84  HCESGA-LKCSPGTEGPCA 137
           HC +GA   CSPG   PCA
Sbjct: 69  HCTAGADPSCSPGAASPCA 87


>07_03_0896 + 22373348-22374946
          Length = 532

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 84  HCESGA-LKCSPGTEGPCA 137
           HC +GA   CSPG   PCA
Sbjct: 70  HCTAGADPSCSPGAASPCA 88


>06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503
          Length = 186

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
 Frame = +3

Query: 321 IFTEPVRCQPGTSFQRDCNTCVCLDNGLGLCS-LDACRR---SSTPKKFELIQGRE--CA 482
           I  E   C P TS +   N+C         C+ L  C+    S  P    L    +  C 
Sbjct: 23  IHVEAKSCCPSTSARNVYNSCRFAGGSREACAKLSTCKHFDGSCQPPYDHLTLNYDGGCC 82

Query: 483 PGSSWSNQCNSCRCNADGYGICS 551
           P S+  N   SCR     Y  C+
Sbjct: 83  PSSTARNIYTSCRFVGGSYDSCA 105


>04_04_1189 +
           31586991-31587291,31587358-31587397,31587449-31587534,
           31587535-31588097,31588250-31589913,31589956-31590066,
           31590152-31591181,31591234-31591406,31591535-31591814,
           31592275-31592331
          Length = 1434

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 29/103 (28%), Positives = 42/103 (40%)
 Frame = -3

Query: 532 SALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQASKEHRPRPLSKQTQVLQSLWKEV 353
           S  HLQ+L+   H   G+H +P   +N + +  L+   K HR          LQ L  +V
Sbjct: 671 SFYHLQVLNVGIH---GSHDVPTSMNNLVNLRHLIAHDKVHRAIAGVGNMSSLQELNFKV 727

Query: 352 PG*QRTGSVNII*SQLSCLKHSATPESEHLQKWQLLSHSVPAR 224
              Q  G   I   QL  +    T E  HL+  +    +  AR
Sbjct: 728 ---QNVGGFEI--RQLQSMNKLVTLEISHLENVKTKDEASGAR 765


>03_03_0041 - 14007687-14009381
          Length = 564

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 538 YPSALHLQLLHWFDHDDPGAHSLPWISSNFLGVDDLLQASKEH 410
           +P+ + L L H     DP    L ++SS+     D   A  EH
Sbjct: 66  HPACVRLTLSHLLPSPDPSLRFLRFLSSHLPAAPDAAPAEPEH 108


>03_02_0032 +
           5143223-5143238,5143477-5143526,5144077-5144173,
           5145272-5145559,5146161-5146402
          Length = 230

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 288 RRLLNQSTCRSGSCSPTRFPPGIPLPTA 205
           RRL N  +C S   S  + PP  P PT+
Sbjct: 181 RRLRNPLSCFSSISSQRQLPPSSPFPTS 208


>02_02_0637 - 12491706-12492575,12492580-12492657
          Length = 315

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = +1

Query: 346 SQAPPSRGIVTLASA*ITVWAYAPWMPVEDRQLPRSLS*SRAENALRDRRGRTSVTVVGA 525
           S+  P+R   T  S     W   PW+P      P S S S +  A R RR R+S  V GA
Sbjct: 116 SRRSPARATSTTHSPFCHSWRTTPWLPTSCSS-PTS-STSPSARATRPRRSRSS-PVFGA 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,338,935
Number of Sequences: 37544
Number of extensions: 487723
Number of successful extensions: 1622
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -