Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1073
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 34 0.086
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.086
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.26
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 32 0.35
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15) 32 0.35
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17) 32 0.46
SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35) 31 0.61
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 31 0.80
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16) 31 0.80
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 31 0.80
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 31 0.80
SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14) 31 0.80
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 31 0.80
SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 30 1.9
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0) 29 3.2
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06) 29 4.3
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 29 4.3
SB_2169| Best HMM Match : EGF_CA (HMM E-Value=6.4e-33) 29 4.3
SB_35754| Best HMM Match : DUF755 (HMM E-Value=2.4) 29 4.3
SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23) 29 4.3
SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7) 28 5.7
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 28 5.7
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 28 5.7
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 5.7
SB_471| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 5.7
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 28 7.5
SB_54| Best HMM Match : Actin (HMM E-Value=0) 28 7.5
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_37317| Best HMM Match : EGF_CA (HMM E-Value=6.6e-25) 27 9.9
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 27 9.9
SB_11378| Best HMM Match : Strep_SA_rep (HMM E-Value=2) 27 9.9
SB_57083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 34.3 bits (75), Expect = 0.086
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 216 VECLAGTEWESNCHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNTCVCLD 395
+ C+ G E + R + G +C+++ C I + + PG +DC CVC D
Sbjct: 209 MRCVEGCECKEE-FVQRVNAVGKVQCIKRKECPCIHDAKIYK--PGDKVYKDCQLCVCKD 265
Query: 396 NGLGLCSLDAC 428
L C+ C
Sbjct: 266 GQLTNCTGQKC 276
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 34.3 bits (75), Expect = 0.086
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 21/195 (10%)
Frame = +3
Query: 81 RHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEM---QSEVECLAGTEWESN 251
R C + + C G C KP+Q+ T ++ E+ ++ C+ E + N
Sbjct: 952 RDCPNNFMCCDSGCYKQCV-------KPNQVFTMPPFSICEVPMRSGQIYCVC-PECD-N 1002
Query: 252 CHFCRCSDSGVA---EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGL 410
C++ G EC +RQD+C +T P+ C P ++F D +TC D+
Sbjct: 1003 TESPVCTNDGKKFPNECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTC 1062
Query: 411 CSLDACRRSSTPKKFELIQGRECAPGSSWSNQC----NSCRCNA-------DGYGICSDE 557
++ C PK + + G + ++ N+C +C+ N Y C D
Sbjct: 1063 VCVEPC-----PKTLKPVYGTD---NKNYDNECLLKLAACKSNTRILIAGFGRYNPCKDV 1114
Query: 558 ACTEHIIEPKKECAP 602
CT P C P
Sbjct: 1115 NCTS---PPYSSCRP 1126
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 32.7 bits (71), Expect = 0.26
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Frame = +3
Query: 288 EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTPKKF 455
EC +RQD+C +T P+ C P ++F D +TC D+ ++ C PK
Sbjct: 44 ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPC-----PKTL 98
Query: 456 ELIQGRECAPGSSWSNQC----NSCRCNA-------DGYGICSDEACTEHIIEPKKECAP 602
+ + G + ++ N+C +C+ N Y C D CT P C P
Sbjct: 99 KPVYGTD---NKNYDNECLLKLAACKSNTRILIAGFGRYNPCKDVNCTS---PPYSSCRP 152
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 32.3 bits (70), Expect = 0.35
Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Frame = +3
Query: 240 WESNC-HFCRCSDSG-----VAECLRQDSCD-QIIFTEPVRCQPG--TSFQRDC-NTCVC 389
W NC H C C++ +C D C +T P P S+ C NTC C
Sbjct: 362 WGHNCAHPCNCTNGARCNAVTGQCACTDGCSCNAGWTGPECRDPCGLDSWGPGCTNTCQC 421
Query: 390 LDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSSWSNQCNSCRCNADGYGIC 548
NG C + R + P C G +N N+C C A +C
Sbjct: 422 SRNGE--CDAASGRCACAPGFTGDRCESRCPKGYYGTNCSNACTCKATNTNVC 472
>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
Length = 1215
Score = 32.3 bits (70), Expect = 0.35
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +3
Query: 111 SPGTEGPCAAEQE---SKDKPSQITTDDASAVQE-MQSEVECLAGTEWESNCHFCRCSDS 278
+P GPC+A P+Q T ++ SE EC GT ++S+ +C
Sbjct: 784 NPAPTGPCSAGYYCTGGAKTPTQFVTSAGHYSEKGAASETECPVGT-YQSSDRASKC--- 839
Query: 279 GVAECLRQDSCDQIIFTEPVRCQPG 353
CL ++ CD++ P+ C G
Sbjct: 840 --IPCLEKNYCDRMGLINPIPCPTG 862
>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
Length = 738
Score = 31.9 bits (69), Expect = 0.46
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = +3
Query: 336 VRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPG-----SSWS 500
V+C PG SF ++ C C++ + + + G +C+PG S
Sbjct: 211 VKCAPGKSFSESIDSSSC--KPCSKCAVGQMVERACNSTHDTLCG-DCSPGFYRDFSVHP 267
Query: 501 NQCNSCR-CNADGYGICSDEACTEHIIEPKKECA 599
C C C D + E CT + PKK+C+
Sbjct: 268 AVCGQCSYCCGDDIDVIEKE-CTAQGMPPKKQCS 300
>SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35)
Length = 684
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +3
Query: 369 DCNTCVCLDNGLGLCSLD--ACRRSSTPKKFELIQGRECAPGSSWSNQCNSCRC 524
+C C C+D G+ C CR S L G A GS + CN+C C
Sbjct: 629 ECRLCQCVD-GVMKCEPRPVGCRVDSQDNMCHLENGEAYAEGSKHFDGCNNCIC 681
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 121 QKAHVQQSKNQKTNRVR*QQMTRLPSKKCSRKWNAWREPSGRATATSA 264
Q+ QQ + Q + + QQ RLP +++ N + +P G A TSA
Sbjct: 1611 QQLQHQQQQQQLQQQQQLQQQQRLPQHHLTQQQNPFYQPPGTAPVTSA 1658
>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
Length = 814
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 121 QKAHVQQSKNQKTNRVR*QQMTRLPSKKCSRKWNAWREPSGRATATSA 264
Q+ QQ + Q + + QQ RLP +++ N + +P G A TSA
Sbjct: 265 QQLQHQQQQQQLQQQQQLQQQQRLPQHHLTQQQNPFYQPPGTAPVTSA 312
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 31.1 bits (67), Expect = 0.80
Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 15/166 (9%)
Frame = +3
Query: 87 CESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWESNCHFCR 266
CE +C PCA D+ + + S +Q C GT N
Sbjct: 1018 CEIDINECD---SNPCANGGTCADQVNSFSCTCVSGYTGLQ----CKTGTVLRYNEKAVD 1070
Query: 267 CSDSGVAECLRQDSCDQIIFTEPVRCQP---GTSFQRDCNTCV---CLDNGLGLCSLD-- 422
++ CL +C+ ++ +CQP GT+ + D N C C++ G ++
Sbjct: 1071 INECASNPCLNGGTCNDLVNGYNCKCQPGYNGTTCEIDINECASNQCVNGGTCTDLVNGF 1130
Query: 423 --ACRRSSTPKKFEL----IQGRECAPGSSWSNQCNSCRCN-ADGY 539
C K E+ + C G + ++Q NS C GY
Sbjct: 1131 NCTCPPGYNGTKCEININECENNPCVNGGTCADQVNSFSCTCVSGY 1176
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 31.1 bits (67), Expect = 0.80
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Frame = +3
Query: 372 CNTCVCLDNGLGLCSLD-AC------RRSSTPKKFELIQGRECAPGSSWSNQCNSCRCNA 530
C C+ GL LC D AC + S P L EC P ++ N N C NA
Sbjct: 190 CENGQCVKRGL-LCDGDKACLDGSDEKHCSCPSNMFLCPSGECIPTTALCNNENDCSDNA 248
Query: 531 D----GYGICS--DEACTEHI-----IEPKKECAP--KTMWKNECN 629
D Y CS + C +I E +++C P T NEC+
Sbjct: 249 DERNCQYANCSLNNLGCRRNIDITQVNEEERKCKPLLSTYVDNECH 294
>SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)
Length = 338
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 252 CHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPG-TSFQRDCNTCVCLDNGLGLCSLDAC 428
CH CS SG+ C + SC I + C+PG T +C C + G S A
Sbjct: 215 CHIDECS-SGINNCHQDASCANTIGSFACTCKPGYTGDGINCADC-AMGMESGAISDSAI 272
Query: 429 RRSSTPKKFELIQGR 473
SS +K GR
Sbjct: 273 TASSYLEKLRPSNGR 287
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 31.1 bits (67), Expect = 0.80
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Frame = +3
Query: 219 ECLAGTEWESN---CHFCRCSDSGVAECL-----RQDSC-DQIIFTEPVRCQPGT-SF-Q 365
+C+ GT + C C C+ +G + L Q SC + ++ + RC+ + F
Sbjct: 136 KCVTGTYGNATAQQCKACDCNVNGSSSSLCDHVTGQCSCKENVVGRDCSRCKVNSYGFGP 195
Query: 366 RDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSSW-----SNQCNSCRCNA 530
C C C N G SL P E+I G +CA + C +C CN
Sbjct: 196 AGCTECAC--NVHGSASLQCDDSGVCPCNLEVI-GTKCAQCKTGYFGLPKMTCKACDCNV 252
Query: 531 DG 536
DG
Sbjct: 253 DG 254
>SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 680
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 622 SFFHIVFGAHSFFGSIMCSVQASSLQMPYPSALHLQLLHWFD-HDDPGAHSLPWISSNFL 446
SF H+ F HS S M V S L++ H LHW D H G++ N
Sbjct: 235 SFMHLAFLHHSMLSSDMTMVLPSHLEV--TQGCHHTTLHWDDTHGVTGSYKKVHPQQNLQ 292
Query: 445 GVD 437
G++
Sbjct: 293 GMN 295
>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.9 bits (64), Expect = 1.9
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 9/149 (6%)
Frame = +3
Query: 183 DASAVQEMQSEVECLAGTEWE-SNCHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPGTS 359
D Q+++S + G W+ +C C C +G EC Q C + P++ + G
Sbjct: 339 DQPVCQDVKSGELYVIGQSWKPDDCSTCFCKKNGKVECAHQ-MCGYPVCANPIK-ETG-- 394
Query: 360 FQRDCNTC--VCLDNGLGLCSLDAC-RRSSTPKKFELIQGRECAPGSSW-SNQCNSCRCN 527
C C +D G G D S P + + G W + C +C C
Sbjct: 395 --HCCPICRDEIVDEGRGEDGGDVVDDPHSCP---DPVTGDYYHRFEMWQQDDCTACICG 449
Query: 528 ADGYGICSDEAC----TEHIIEPKKECAP 602
+D C+ + C ++ + K C P
Sbjct: 450 SDRKLQCTKKTCPKLLCDNPVHNKGRCCP 478
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = +3
Query: 354 TSFQRDCNTCVCLDNGLG----LCSLDACRRSSTPKKFELIQGRECAP 485
T+ + DCNTC C+ +C D C SST G C P
Sbjct: 1195 TTVKEDCNTCSCVHGTRTCTKVVCGPDNCLNSSTVSNDICSMGSVCVP 1242
>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
Length = 561
Score = 29.1 bits (62), Expect = 3.2
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 8/159 (5%)
Frame = +3
Query: 60 ICFIVLARHCESGALKCSPGTEGPCAAE------QESKDKPSQITTDDASAVQEMQSEVE 221
+C L R+ ++GA+ T E Q K PS+I S + +
Sbjct: 277 LCLHFLRRNSKAGAVGAEEHTMAKYLMELTLIDYQSIKFLPSEIAAASLSLAMRVMGK-- 334
Query: 222 CLAGTEWESNC-HFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNTCVC-LD 395
G+EW H+ S+ ++ C+ Q ++ + + T + C++C
Sbjct: 335 ---GSEWTPTLEHYSGYSEKKLSTCM-QRLAQLVLGARDSKQKDSTGRIQMCSSCFGDTK 390
Query: 396 NGLGLCSLDACRRSSTPKKFELIQGRECAPGSSWSNQCN 512
LC + C + S P+ E + G + ++ CN
Sbjct: 391 YQCILCEMPFCNKCSFPELDENVAGWKAGKSVAYCKCCN 429
>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 351 GTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELI-QGRE 476
G DCN+CVC G +C+ C SS K L+ QG +
Sbjct: 256 GAEIPTDCNSCVCA-CGRWVCTALDCNPSSNHVKASLVLQGEQ 297
>SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06)
Length = 218
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Frame = +3
Query: 507 CNSCRCNADGYGICS---------DEACTEHIIEPKKECAP 602
C C CN+ CS D AC ++++EP K+C P
Sbjct: 104 CQKCECNSGKASSCSIGYHCDALLDGACEKYVLEP-KQCCP 143
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = +3
Query: 333 PVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSSWSNQCN 512
PV C G ++ C+ C + C + R T E++ G + S + +C
Sbjct: 772 PVACACGKTW---CSECQEETHWPAKCEIAQRFRKQTKAYQEILNGMDNRIKSVFVKRCP 828
Query: 513 SCRCNADGYGICSDEACT 566
+CR + G C +CT
Sbjct: 829 ACRYPVEKNGGCPHMSCT 846
>SB_2169| Best HMM Match : EGF_CA (HMM E-Value=6.4e-33)
Length = 133
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Frame = +3
Query: 87 CESGALKCSPGTE---GPCAAEQESKDKPSQITTDDASAVQEMQSE---VECLAGTEWE- 245
C++ A+KCS G E G C E ++ + + E + C G E+
Sbjct: 27 CQASAIKCSRGYEPQNGRCVDVDECSSGLARCPSGQSCVNTEGSYSCLPIGCSPGFEFRG 86
Query: 246 SNCHFCRCSDSGVAECLRQDSCDQIIFT-EPVRCQPGTSF 362
C SG+A C R+ C+ + V C+ G F
Sbjct: 87 GKCQDIDECASGIARCGREQFCENVEGAYRCVTCRTGYRF 126
>SB_35754| Best HMM Match : DUF755 (HMM E-Value=2.4)
Length = 604
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 315 DHSCPASSTRRLLNQSTCRSGSCSPTRFPPGIP 217
D C +S RRL +ST + S PPG P
Sbjct: 498 DDECLSSVARRLSTESTASTTDSSVASLPPGTP 530
>SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23)
Length = 198
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +3
Query: 348 PGTSFQRD--CNTCVCLDNGLGLCSLDACRRSSTPKKFELIQ-GRECAPGSSWSNQCNSC 518
PG F + +CV +GL C+ C S ++ E Q G P + QC C
Sbjct: 21 PGGPFSANSFARSCVLGSDGLPTCT--NCSESHAGRQCERCQDGYYGTPTDPVNGQCRKC 78
Query: 519 RCNAD 533
CN +
Sbjct: 79 NCNGN 83
>SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)
Length = 203
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 384 VCLDNGLGLC-SLDACRRS-STPKKFELIQGRECAPGSSWSNQCNSCRCN 527
VC+ L L SL C RS ++++L Q R C S W Q C+
Sbjct: 112 VCVLGALPLPRSLTRCARSFGCGERYQLTQRRACPSSSRWPRQAYQSTCD 161
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 28.3 bits (60), Expect = 5.7
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Frame = +3
Query: 288 EC-LRQDSCDQI----IFTEPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKK 452
EC +R+ +CDQ+ I + C G + + D TC +D L L R ++TP
Sbjct: 248 ECEIRKHTCDQVCVNTIGSFRCGCNVGYTLRNDSKTCSDIDECLDDAHLCDQRCTNTPGS 307
Query: 453 FELIQGRECAPGSSWSNQCNSC----RCNADGYGICSDEACTEHIIEPKKECAPKTMWKN 620
+ C G S S+ +C C +G CS + C + C N
Sbjct: 308 YAC----GCYHGYSLSSDMKTCIDIDECTMTSHG-CS-QLCNNTLGGYNCYCLSGYSLGN 361
Query: 621 ECNTC 635
+ TC
Sbjct: 362 DNRTC 366
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 28.3 bits (60), Expect = 5.7
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Frame = +3
Query: 213 EVECLAGTEWESNCHFCRCSDSGVAECLRQDSCDQI----IFTEPVRCQPGTSFQRDCNT 380
+ C +G + C DSG +C + +C + FT CQ G + DC
Sbjct: 160 QCNCTSGFTGD-RCEKQCAGDSGGVDCRQHCNCTEWGTCNPFTGKCLCQSGF-YGEDCGA 217
Query: 381 CVCLDNGLG-LCSLDA-CRRSSTPKKFE-LIQGR--------ECAPGSSWSNQC-NSCRC 524
C D G C+ C++++T K + Q + EC+PG + N+C +C C
Sbjct: 218 -ECPDGTYGPACTAHCKCQKNATCDKIDGTCQCKPGWTGIDCECSPGK-YGNKCEKTCSC 275
Query: 525 N 527
N
Sbjct: 276 N 276
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +3
Query: 486 GSSWSNQC----NSC----RCNADGYGICSDEACTEHIIEPKKECAPKTMWKNECN 629
G +++N+C +SC + G C +AC+ H+ E ++C KT +++EC+
Sbjct: 973 GKTYTNECLLKVDSCAEQKEISVKHKGAC--DACSNHVCEENEDCDKKT-YQSECH 1025
>SB_471| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 587
Score = 28.3 bits (60), Expect = 5.7
Identities = 30/144 (20%), Positives = 45/144 (31%), Gaps = 6/144 (4%)
Frame = +3
Query: 222 CLAGTEWESNCHFCRCSDSGVA--ECLRQDSCDQIIFTEPVRCQPGTSF----QRDCNTC 383
C+A NC C CS G +C C +C S+ +C C
Sbjct: 374 CMASYTGFPNCRKCECSPVGSVSPDCDVTGHCTCTRGFGGRKCDRCASYGYYGYPNCKAC 433
Query: 384 VCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSSWSNQCNSCRCNADGYGICSDEAC 563
C G + + FE ++ +C G +C C CN G + +
Sbjct: 434 NCDTRGSLSTFCGSWGQCQCRMNFEGLKCDQCRVGYYDFPRCKQCGCNPAGIRLLPGQQN 493
Query: 564 TEHIIEPKKECAPKTMWKNECNTC 635
T K + + EC C
Sbjct: 494 TCGNGNDTKCTCKENVQGAECEQC 517
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 292 HSATPESEHLQKWQLLSHSVPARHSTSDCISWTAD 188
H TPE E + L P + + +CISW+ +
Sbjct: 400 HEKTPEMEFAEHGTLKEDVCPGKVYSDECISWSKE 434
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/68 (25%), Positives = 27/68 (39%)
Frame = +3
Query: 357 SFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSSWSNQCNSCRCNADG 536
+F+++ T V +DNG G C S F I GR W + + R +
Sbjct: 2088 AFEQNGGTVVVIDNGSGFCKAGLSTDESPRVVFPAIVGR--PRHKMWEHAFDQLRVRGED 2145
Query: 537 YGICSDEA 560
+ + EA
Sbjct: 2146 FPVLLTEA 2153
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +3
Query: 96 GALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWESNCHFCRCSD 275
G + S G + A +++ + ++ + A++E + CL G + + C C D
Sbjct: 12 GTRQASIGQDLGALAYDDTQTETLDLSDVEVLAIEETMCDPPCLRGEQCDEELGVCVCDD 71
Query: 276 S 278
S
Sbjct: 72 S 72
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Frame = +3
Query: 477 CAP-GSSWSNQCNS--CRCNADGYGICSDEACTEHIIEPKK---ECAP 602
CAP GSS +N S C CNA GY E C E I E CAP
Sbjct: 604 CAPIGSSCTNNAGSYTCSCNA-GYA-GDGETCVEDIDECSSGAHTCAP 649
>SB_37317| Best HMM Match : EGF_CA (HMM E-Value=6.6e-25)
Length = 86
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Frame = +3
Query: 477 CAP-GSSWSNQCNS--CRCNADGYGICSDEACTEHIIEPKK---ECAP 602
CAP GSS +N S C CNA GY E C E I E CAP
Sbjct: 12 CAPIGSSCTNNAGSFTCSCNA-GYA-GDGETCVEDIDECSSGAHTCAP 57
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Frame = +3
Query: 240 WESNCHFCRC--SDSGVAECLR-----QDSCDQIIFTEPVRCQPGTSF-QRDCNTCVCLD 395
WE N C+C +D+ +C SC + P C G + QR C CVC
Sbjct: 814 WEPNNCLCKCRYADTQPKKCPEGHRWSASSCSCMCDKAPEVCPVGKYWSQRSCG-CVCSA 872
Query: 396 NGLGLCS 416
+ +G C+
Sbjct: 873 HVVGACN 879
>SB_11378| Best HMM Match : Strep_SA_rep (HMM E-Value=2)
Length = 319
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 123 EGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEW-ESNCHFCRCSDSGVAECLR 299
E P AE+E DK + D Q+ + + LA +W ++ C GVA +
Sbjct: 68 ESPALAEKERHDKALEKYQRDYGRYQQRRQKNPRLASAKWLQTGCGVLCTYVEGVAAAAK 127
Query: 300 QD 305
+D
Sbjct: 128 RD 129
>SB_57083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 499 RTSVTVVGAMPMDTAFVVTKPALN-TLSSQRKNVRRRRCG 615
+TS T+V P D+ +++K A+N ++ +K ++ +R G
Sbjct: 19 KTSRTIVFPYPTDSTLLISKAAVNAAVTMFKKGIKYKRAG 58
>SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 631 VLHSFFHIVFGAHSFFGSIMCSVQASSLQMPYPSALHL-QLLHW 503
V H+ FHI HSF V S L P S +H+ Q++H+
Sbjct: 458 VTHTSFHISSRTHSFTYRHARIVSHSELNYPKTSVVHVDQIVHF 501
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,517,608
Number of Sequences: 59808
Number of extensions: 578333
Number of successful extensions: 1984
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1977
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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