Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1073
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 501 STTTIPERILCPGSAQTSWELT 436
           S + +PE ILCP    T  E T
Sbjct: 433 SESCLPEEILCPHFNVTDGETT 454


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 548  TNAVSIGIAPTTVTLVRPRRSRSAFSALDQL 456
            T++ S  I+P +     PRR RS+ S+L  L
Sbjct: 1822 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTL 1852


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 548  TNAVSIGIAPTTVTLVRPRRSRSAFSALDQL 456
            T++ S  I+P +     PRR RS+ S+L  L
Sbjct: 1818 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTL 1848


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 523 HLQLLHWFDHDDPGAHSLP 467
           H  L H+  H DPG   LP
Sbjct: 275 HTGLGHYGHHPDPGEVDLP 293


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 519 YNCYTGSTTTIPERILCPGSAQ 454
           Y    GS  T  +R+L PGS Q
Sbjct: 913 YKISKGSWETDIDRVLVPGSQQ 934


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,030
Number of Sequences: 438
Number of extensions: 4140
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)