BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1073 (645 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 4.4 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 4.4 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 4.4 AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 5.8 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 7.7 >AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate receptor 1 protein. Length = 953 Score = 22.2 bits (45), Expect = 4.4 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -1 Query: 501 STTTIPERILCPGSAQTSWELT 436 S + +PE ILCP T E T Sbjct: 433 SESCLPEEILCPHFNVTDGETT 454 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 22.2 bits (45), Expect = 4.4 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -2 Query: 548 TNAVSIGIAPTTVTLVRPRRSRSAFSALDQL 456 T++ S I+P + PRR RS+ S+L L Sbjct: 1822 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTL 1852 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 22.2 bits (45), Expect = 4.4 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -2 Query: 548 TNAVSIGIAPTTVTLVRPRRSRSAFSALDQL 456 T++ S I+P + PRR RS+ S+L L Sbjct: 1818 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTL 1848 >AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. Length = 652 Score = 21.8 bits (44), Expect = 5.8 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = -3 Query: 523 HLQLLHWFDHDDPGAHSLP 467 H L H+ H DPG LP Sbjct: 275 HTGLGHYGHHPDPGEVDLP 293 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 21.4 bits (43), Expect = 7.7 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -1 Query: 519 YNCYTGSTTTIPERILCPGSAQ 454 Y GS T +R+L PGS Q Sbjct: 913 YKISKGSWETDIDRVLVPGSQQ 934 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 197,030 Number of Sequences: 438 Number of extensions: 4140 Number of successful extensions: 7 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 19438227 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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