Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1073
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11410.1 68414.m01311 S-locus protein kinase, putative simila...    28   4.6  
At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp...    27   8.1  

>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
           to receptor-like protein kinase [Arabidopsis thaliana]
           gi|4008008|gb|AAC95352; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 840

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 546 KCRIHRHCTYNCYTGSTTTIPERILC-PG 463
           KC I+ HC +N Y  ST+T      C PG
Sbjct: 286 KCDIYNHCGFNGYCDSTSTEKFECSCLPG 314


>At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein weak similarity to
           spliceosome-associated-protein 114 [Echinococcus
           multilocularis] GI:11602721; contains Pfam profile
           PF01805: Surp module
          Length = 285

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 438 TIFYRHPRSIGPDRYLSRRKCYNPSGRRC 352
           T F    RS     +LSRR CY P  +RC
Sbjct: 107 TSFRTRVRSFTTSLWLSRRGCYFPVEKRC 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,055
Number of Sequences: 28952
Number of extensions: 356325
Number of successful extensions: 1166
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)