Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1071
         (425 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1; ...   140   8e-33
UniRef50_Q5MGF8 Cluster: Putative uncharacterized protein; n=1; ...    49   4e-05
UniRef50_Q8L9F8 Cluster: Mitochondrial carrier-like protein; n=1...    32   5.7  
UniRef50_A0FZL3 Cluster: Putative uncharacterized protein precur...    31   9.9  

>UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 272

 Score =  140 bits (340), Expect = 8e-33
 Identities = 77/114 (67%), Positives = 77/114 (67%)
 Frame = +2

Query: 83  MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSXXXXXXXXXXXXXXXXXXX 262
           MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDS                   
Sbjct: 1   MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKAEPAP 60

Query: 263 XSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSCEIPDAEAKS 424
            SNDEVPAIPEAKKDDIAPEDSDIA                AKS EIPDAEAKS
Sbjct: 61  VSNDEVPAIPEAKKDDIAPEDSDIAKPETVPEVKTEEKVPEAKSSEIPDAEAKS 114


>UniRef50_Q5MGF8 Cluster: Putative uncharacterized protein; n=1;
           Lonomia obliqua|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 206

 Score = 49.2 bits (112), Expect = 4e-05
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +2

Query: 80  KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPI 175
           +MKVLLLC+AFAAVS+AMPVAEEK  V   P+
Sbjct: 18  RMKVLLLCMAFAAVSMAMPVAEEKPEVAEVPV 49


>UniRef50_Q8L9F8 Cluster: Mitochondrial carrier-like protein; n=12;
           Magnoliophyta|Rep: Mitochondrial carrier-like protein -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 342

 Score = 31.9 bits (69), Expect = 5.7
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -3

Query: 210 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 106
           +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>UniRef50_A0FZL3 Cluster: Putative uncharacterized protein
           precursor; n=1; Burkholderia phymatum STM815|Rep:
           Putative uncharacterized protein precursor -
           Burkholderia phymatum STM815
          Length = 110

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 83  MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPI 175
           MK  + CIAFAA ++A+P   ++   PA  +
Sbjct: 1   MKTTVFCIAFAAAAVAVPAHADQPATPADKV 31


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,199,713
Number of Sequences: 1657284
Number of extensions: 4399774
Number of successful extensions: 10564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10540
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20232460752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)