Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1071
         (425 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   2.9  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   6.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.6  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    20   8.7  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 75  MDPVTRRRFLKH 40
           +DPV +RR L+H
Sbjct: 127 LDPVVKRRLLQH 138


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 47  KKRRRVTGSIFKMKV 91
           +KRR V  SIFK++V
Sbjct: 79  EKRREVYESIFKVEV 93


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 47  KKRRRVTGSIFKMKV 91
           +KRR V  SIFK++V
Sbjct: 239 EKRREVYESIFKVEV 253


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 47  KKRRRVTGSIFKMKV 91
           +KRR V  SIFK++V
Sbjct: 239 EKRREVYESIFKVEV 253


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 88  LHLKYGSCDATPLFKTLTQ 32
           + L+Y   D  P+F +LTQ
Sbjct: 198 VELEYLKTDLIPMFLSLTQ 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,745
Number of Sequences: 336
Number of extensions: 1088
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)