Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1071
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0616 - 26638438-26638638,26638890-26638971,26639054-266391...    27   6.3  
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384           27   6.3  

>04_04_0616 -
           26638438-26638638,26638890-26638971,26639054-26639141,
           26639222-26639278,26641334-26641526
          Length = 206

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 128 AMPVAEEKDVV--PAQPILEVAPKIDDS 205
           A  VAEEK V+  PA P  E  P +DDS
Sbjct: 30  AKDVAEEKAVIPAPAPPAEEEKPPVDDS 57


>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
          Length = 335

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 50  KRRRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEV 184
           KR    G +  ++ LLLC+A AA + A+P A      P  P+ E+
Sbjct: 96  KRIGSAGDLGWIEYLLLCLAPAAAAAALPCAATSPTPPC-PLREL 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,236,328
Number of Sequences: 37544
Number of extensions: 120224
Number of successful extensions: 267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)