Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1071
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   2.4  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   2.4  
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    26   9.8  

>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 119 VSLAMPVAEEKDVVPAQPIL 178
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 119 VSLAMPVAEEKDVVPAQPIL 178
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 119 VSLAMPVAEEKDVVPAQPIL 178
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 119 VSLAMPVAEEKDVVPAQPIL 178
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
           protein C36B1.8b protein.
          Length = 1052

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 165 AGTTSFSSATGIAKLTAAKAMHN 97
           + T+S S  TGI+K  A KA HN
Sbjct: 136 SSTSSTSQQTGISKFPAKKAGHN 158


>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
           protein C36B1.8a protein.
          Length = 1049

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 165 AGTTSFSSATGIAKLTAAKAMHN 97
           + T+S S  TGI+K  A KA HN
Sbjct: 136 SSTSSTSQQTGISKFPAKKAGHN 158


>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 325 VFWGYIVLFGLWYSGYLVVT 266
           +F  +I++  LWY G+LV+T
Sbjct: 412 LFQSFIIVSVLWYGGHLVLT 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,034,870
Number of Sequences: 27780
Number of extensions: 103220
Number of successful extensions: 240
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)