Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1071
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   4.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 404 ESRMILLPGLFLRFSL 357
           ES  +LLP ++LR++L
Sbjct: 249 ESEDVLLPSVYLRWNL 264


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 32  LCQCFKKRRRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKD 154
           +C+       V G    M+++LLC   A   + +   EEKD
Sbjct: 225 ICKLSHSNASVAGG---MEMILLCEKVAKEDIQVRFFEEKD 262


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 32  LCQCFKKRRRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKD 154
           +C+       V G    M+++LLC   A   + +   EEKD
Sbjct: 225 ICKLSHSNASVAGG---MEMILLCEKVAKEDIQVRFFEEKD 262


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 279 YPLYQRPKRTI*PQKT 326
           +P Y+RP+ T  P+ T
Sbjct: 156 HPRYKRPRTTFEPRAT 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,726
Number of Sequences: 438
Number of extensions: 1355
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)