Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1067
(550 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B503E Cluster: PREDICTED: similar to splicing f... 227 1e-58
UniRef50_UPI0000EBDD2E Cluster: PREDICTED: similar to splicing f... 170 2e-41
UniRef50_P26368 Cluster: Splicing factor U2AF 65 kDa subunit (U2... 170 2e-41
UniRef50_P90978 Cluster: Splicing factor U2AF 65 kDa subunit; n=... 160 2e-38
UniRef50_UPI000065F936 Cluster: Splicing factor U2AF 65 kDa subu... 137 1e-31
UniRef50_Q8T8Y4 Cluster: AT16577p; n=3; Sophophora|Rep: AT16577p... 127 1e-28
UniRef50_Q4SAX3 Cluster: Chromosome 3 SCAF14679, whole genome sh... 125 6e-28
UniRef50_UPI0000F2E898 Cluster: PREDICTED: similar to U2 (RNU2) ... 105 5e-22
UniRef50_Q4TF95 Cluster: Chromosome undetermined SCAF4753, whole... 73 3e-12
UniRef50_Q5C2P7 Cluster: SJCHGC09464 protein; n=1; Schistosoma j... 64 2e-09
UniRef50_Q54LV5 Cluster: RNA-binding region-containing protein; ... 64 2e-09
UniRef50_Q5KFM4 Cluster: RRNA primary transcript binding protein... 63 4e-09
UniRef50_Q0UUV3 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_Q4P3F0 Cluster: Putative uncharacterized protein; n=3; ... 60 4e-08
UniRef50_A2QMQ0 Cluster: Contig An07c0080, complete genome; n=11... 53 5e-06
UniRef50_Q5CXC0 Cluster: Splicing factor U2AF U2 snRNP auxiliary... 51 2e-05
UniRef50_A4RFH0 Cluster: Putative uncharacterized protein; n=4; ... 48 1e-04
UniRef50_A4VDP3 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_A2Q4R3 Cluster: RNA-binding region RNP-1; n=2; core eud... 46 6e-04
UniRef50_Q3EBP3 Cluster: Uncharacterized protein At2g33435.1; n=... 42 0.009
UniRef50_Q3E9P9 Cluster: Uncharacterized protein At4g36690.3; n=... 42 0.009
UniRef50_O23212 Cluster: Splicing factor-like protein; n=22; Euk... 42 0.009
UniRef50_A0EAC5 Cluster: Chromosome undetermined scaffold_86, wh... 42 0.009
UniRef50_A7NXF8 Cluster: Chromosome chr5 scaffold_2, whole genom... 39 0.066
UniRef50_A5K369 Cluster: U2 snRNP auxiliary factor, putative; n=... 38 0.12
UniRef50_Q5CSE3 Cluster: Splicing factor U2AF like SnRNP auxilar... 38 0.15
UniRef50_A7AR94 Cluster: Putative uncharacterized protein; n=1; ... 37 0.27
UniRef50_Q10S20 Cluster: RNA recognition motif family protein, e... 37 0.35
UniRef50_UPI0000DB6CD5 Cluster: PREDICTED: similar to no on or o... 36 0.47
UniRef50_UPI0000498FCC Cluster: U2 snRNP auxiliary factor large ... 36 0.62
UniRef50_A2AEK1 Cluster: Cleavage stimulation factor, 3' pre-RNA... 36 0.62
UniRef50_O22794 Cluster: Putative splicing factor U2AF large cha... 36 0.62
UniRef50_Q4UCN0 Cluster: Snrnp splicing factor (U2AF), putative;... 36 0.62
UniRef50_A1CA44 Cluster: RNP domain protein; n=13; Pezizomycotin... 36 0.62
UniRef50_Q0LJY9 Cluster: Response regulator receiver; n=1; Herpe... 35 1.1
UniRef50_Q7RQR4 Cluster: KED; n=3; Plasmodium (Vinckeia)|Rep: KE... 35 1.1
UniRef50_Q8IBU0 Cluster: Putative uncharacterized protein PF07_0... 35 1.4
UniRef50_Q2U8W5 Cluster: Predicted protein; n=1; Aspergillus ory... 35 1.4
UniRef50_Q7RNT2 Cluster: 19096-22891; n=6; Plasmodium|Rep: 19096... 34 1.9
UniRef50_Q6C1Y4 Cluster: Similarities with sp|P34761 Saccharomyc... 34 1.9
UniRef50_Q9U1N0 Cluster: Hrp65 protein; n=3; Chironomus tentans|... 34 1.9
UniRef50_A7S854 Cluster: Predicted protein; n=4; Nematostella ve... 34 2.5
UniRef50_A7PJ01 Cluster: Chromosome chr13 scaffold_17, whole gen... 33 3.3
UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r... 33 3.3
UniRef50_A5GEF6 Cluster: RNP-1 like RNA-binding protein; n=1; Ge... 33 4.4
UniRef50_UPI00006CBD24 Cluster: hypothetical protein TTHERM_0015... 33 5.8
UniRef50_Q2JJY2 Cluster: Putative uncharacterized protein; n=2; ... 33 5.8
UniRef50_Q70JP5 Cluster: Putative DIP2 protein; n=5; BEP clade|R... 33 5.8
UniRef50_Q6ID24 Cluster: At4g12630; n=6; Arabidopsis thaliana|Re... 33 5.8
UniRef50_Q57W18 Cluster: RNA-binding protein, putative; n=1; Try... 33 5.8
UniRef50_Q4N3F2 Cluster: U2 small nuclear ribonucleoprotein, aux... 33 5.8
UniRef50_UPI0000E47894 Cluster: PREDICTED: similar to scavenger ... 32 7.6
UniRef50_UPI00006CBE3B Cluster: hypothetical protein TTHERM_0031... 32 7.6
UniRef50_Q7ZUX2 Cluster: Cstf2 protein; n=2; Danio rerio|Rep: Cs... 32 7.6
UniRef50_Q9VHP3 Cluster: CG8021-PA; n=3; Diptera|Rep: CG8021-PA ... 32 7.6
UniRef50_A7AU39 Cluster: RNA recognition motif (RRM)-containing ... 32 7.6
UniRef50_Q6C4U4 Cluster: Similarities with tr|O13845 Schizosacch... 32 7.6
UniRef50_Q00880 Cluster: Cutinase negative acting protein; n=2; ... 32 7.6
UniRef50_A6SSI6 Cluster: Putative uncharacterized protein; n=2; ... 32 7.6
UniRef50_Q04047 Cluster: Protein no-on-transient A; n=61; Dipter... 32 7.6
>UniRef50_UPI00015B503E Cluster: PREDICTED: similar to splicing
factor u2af large subunit; n=2; Apocrita|Rep: PREDICTED:
similar to splicing factor u2af large subunit - Nasonia
vitripennis
Length = 547
Score = 227 bits (556), Expect = 1e-58
Identities = 107/113 (94%), Positives = 107/113 (94%)
Frame = +3
Query: 210 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 389
LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP
Sbjct: 185 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 244
Query: 390 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETTQ 548
FGVTEEE MEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL DETTQ
Sbjct: 245 FGVTEEEMMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 297
>UniRef50_UPI0000EBDD2E Cluster: PREDICTED: similar to splicing
factor U2AF homolog - mouse; n=2; Bos taurus|Rep:
PREDICTED: similar to splicing factor U2AF homolog -
mouse - Bos taurus
Length = 330
Score = 170 bits (413), Expect = 2e-41
Identities = 84/120 (70%), Positives = 89/120 (74%), Gaps = 8/120 (6%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 368
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETTQ 548
LYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA QIN DKNFAFL DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210
>UniRef50_P26368 Cluster: Splicing factor U2AF 65 kDa subunit (U2
auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)); n=44; Eumetazoa|Rep:
Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor
65 kDa subunit) (U2 snRNP auxiliary factor large
subunit) (hU2AF(65)) - Homo sapiens (Human)
Length = 475
Score = 170 bits (413), Expect = 2e-41
Identities = 84/120 (70%), Positives = 89/120 (74%), Gaps = 8/120 (6%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 368
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETTQ 548
LYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA QIN DKNFAFL DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210
>UniRef50_P90978 Cluster: Splicing factor U2AF 65 kDa subunit; n=7;
Bilateria|Rep: Splicing factor U2AF 65 kDa subunit -
Caenorhabditis elegans
Length = 496
Score = 160 bits (388), Expect = 2e-38
Identities = 74/111 (66%), Positives = 86/111 (77%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 392
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 193
Query: 393 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETT 545
G EE ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+ DETT
Sbjct: 194 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETT 244
>UniRef50_UPI000065F936 Cluster: Splicing factor U2AF 65 kDa subunit
(U2 auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)).; n=1; Takifugu
rubripes|Rep: Splicing factor U2AF 65 kDa subunit (U2
auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)). - Takifugu rubripes
Length = 555
Score = 137 bits (332), Expect = 1e-31
Identities = 79/136 (58%), Positives = 84/136 (61%), Gaps = 34/136 (25%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQ--------------------------AAGQIPANIVADT 314
YWDVPPPGFEHITP+QYKAMQ AAGQIPA + T
Sbjct: 78 YWDVPPPGFEHITPMQYKAMQGTKAGLNTRPSGFSRTRLPFRDARVSAAGQIPATALLPT 137
Query: 315 --------PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN 470
VPVVGS +TRQARRLYVGNIPFG+TEE M+FFN QM L GL QA GN
Sbjct: 138 MTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGN 197
Query: 471 PVLACQINLDKNFAFL 518
PVLA QIN DKNFAFL
Sbjct: 198 PVLAVQINQDKNFAFL 213
>UniRef50_Q8T8Y4 Cluster: AT16577p; n=3; Sophophora|Rep: AT16577p -
Drosophila melanogaster (Fruit fly)
Length = 449
Score = 127 bits (307), Expect = 1e-28
Identities = 62/116 (53%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Frame = +3
Query: 216 WDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFG 395
WD+PP G+ H+TP Q+KAM A+GQI + I++D S ITRQARRLYVGNIPFG
Sbjct: 62 WDIPPEGYNHLTPQQHKAMLASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFG 121
Query: 396 VTEEETMEFFNQQMHLSGLAQAA-----GNPVLACQINLDKNFAFLNSDQFDETTQ 548
VT+EE M+FFN Q+ G + GN VL CQ NL+KNFAFL DE +Q
Sbjct: 122 VTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFRSIDEASQ 177
>UniRef50_Q4SAX3 Cluster: Chromosome 3 SCAF14679, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 3 SCAF14679, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 600
Score = 125 bits (302), Expect = 6e-28
Identities = 79/141 (56%), Positives = 87/141 (61%), Gaps = 39/141 (27%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQ----------------------AAGQIPANIVADTPQAA 326
YWDVPPPGFEHITPLQYKAMQ AAGQIP + T +A
Sbjct: 89 YWDVPPPGFEHITPLQYKAMQGRAPPRLPGPAPRLPSVSLWPPAAGQIPTMALLATAASA 148
Query: 327 --------VPVVGSTITRQARRLYVGNIPFGVTE--------EETM-EFFNQQMHLSGLA 455
VPV GS +TRQARRLYVGNIPFG+TE +E+M EFFN QM L+GL+
Sbjct: 149 GVVAAPTPVPVAGSQMTRQARRLYVGNIPFGLTEALRRLCSPQESMAEFFNAQMRLAGLS 208
Query: 456 QAAGNPVLACQINLDKNFAFL 518
QA NPVLA QIN DKNFAFL
Sbjct: 209 QAPSNPVLAVQINQDKNFAFL 229
>UniRef50_UPI0000F2E898 Cluster: PREDICTED: similar to U2 (RNU2)
small nuclear RNA auxiliary factor 2,; n=1; Monodelphis
domestica|Rep: PREDICTED: similar to U2 (RNU2) small
nuclear RNA auxiliary factor 2, - Monodelphis domestica
Length = 386
Score = 105 bits (253), Expect = 5e-22
Identities = 51/72 (70%), Positives = 55/72 (76%), Gaps = 8/72 (11%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 368
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 369 LYVGNIPFGVTE 404
LYVGNIPFG+TE
Sbjct: 151 LYVGNIPFGITE 162
>UniRef50_Q4TF95 Cluster: Chromosome undetermined SCAF4753, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4753,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 351
Score = 73.3 bits (172), Expect = 3e-12
Identities = 45/78 (57%), Positives = 48/78 (61%), Gaps = 18/78 (23%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQ----------AAGQIPANIVADTPQ--------AAVPVVGSTI 350
PPPGFEHITPLQYKAMQ AAGQIP A + VPV GS +
Sbjct: 76 PPPGFEHITPLQYKAMQGLPSVSLWPPAAGQIPNYGAAGHGRQRGRGGAPTPVPVAGSQM 135
Query: 351 TRQARRLYVGNIPFGVTE 404
TRQARRLYVGN PFG+TE
Sbjct: 136 TRQARRLYVGNNPFGLTE 153
>UniRef50_Q5C2P7 Cluster: SJCHGC09464 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09464 protein - Schistosoma
japonicum (Blood fluke)
Length = 159
Score = 64.5 bits (150), Expect = 2e-09
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVA 308
YWDVPPPGFEH+TP QYKA+Q +GQ+P N+ A
Sbjct: 127 YWDVPPPGFEHVTPAQYKALQTSGQVPVNVYA 158
>UniRef50_Q54LV5 Cluster: RNA-binding region-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: RNA-binding
region-containing protein - Dictyostelium discoideum AX4
Length = 671
Score = 64.1 bits (149), Expect = 2e-09
Identities = 30/64 (46%), Positives = 41/64 (64%)
Frame = +3
Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQF 533
+Q+RR+YVGNIP G+++ E MEFFN + + L G PV+ CQIN K FAF+
Sbjct: 265 KQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTKPGPPVVFCQINAPKCFAFIEFRSP 324
Query: 534 DETT 545
+E T
Sbjct: 325 EEAT 328
>UniRef50_Q5KFM4 Cluster: RRNA primary transcript binding protein,
putative; n=2; Filobasidiella neoformans|Rep: RRNA
primary transcript binding protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 651
Score = 63.3 bits (147), Expect = 4e-09
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Frame = +3
Query: 216 WDVPPPGFEHITPLQYKAM----QAAGQIP--ANIVADTPQAAVPVVGSTITRQARRLYV 377
WD P F+ I+ L+ K G++P A++ A S RQ RLY+
Sbjct: 220 WDTAPVQFQGISALEAKTTGLFTYGPGRVPPPAHLGIPATFVAGAFPPSNPVRQNNRLYI 279
Query: 378 GNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETT 545
G I + E++ +FFN M G+A +PV CQIN D+NFAF+ ++ T
Sbjct: 280 GGIKEDMQEQQIQDFFNNLMKEKGMADGKEDPVKQCQINNDRNFAFIELHTPEQAT 335
>UniRef50_Q0UUV3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 606
Score = 61.7 bits (143), Expect = 1e-08
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Frame = +3
Query: 216 WDVPPPGFEHITPLQYK---------AMQAAGQIPANIVA----DTPQAAVPVVGSTITR 356
WD+ P G+E+IT Q K A +AA P+ + A A+ + ++
Sbjct: 224 WDIKPAGYENITAEQAKLSGMFPLPGAPRAAPMDPSKLAAFMSPSAGTASAAALAPGASK 283
Query: 357 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLNSDQF 533
Q++RLYV N+P G T EE +EFFN Q L+GL +G +P L+ QI K +A L
Sbjct: 284 QSKRLYVHNLPSGTTSEELLEFFNLQ--LNGLNVVSGQDPCLSAQIASSKTYAALEFKTP 341
Query: 534 DETT 545
++ T
Sbjct: 342 EDAT 345
>UniRef50_Q4P3F0 Cluster: Putative uncharacterized protein; n=3;
Fungi/Metazoa group|Rep: Putative uncharacterized
protein - Ustilago maydis (Smut fungus)
Length = 727
Score = 59.7 bits (138), Expect = 4e-08
Identities = 28/64 (43%), Positives = 38/64 (59%)
Frame = +3
Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQF 533
RQARRLYVGNI E+ + FFN+QM L G P ++ Q+N+DK +AF+
Sbjct: 350 RQARRLYVGNITHQANEQNIVAFFNEQMLKLKLGTEPGEPAVSAQVNVDKGYAFVEFRHP 409
Query: 534 DETT 545
+E T
Sbjct: 410 EEAT 413
>UniRef50_A2QMQ0 Cluster: Contig An07c0080, complete genome; n=11;
Pezizomycotina|Rep: Contig An07c0080, complete genome -
Aspergillus niger
Length = 598
Score = 52.8 bits (121), Expect = 5e-06
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Frame = +3
Query: 216 WDVPPPGFEHITPLQYK---------AMQAAGQIPANIVADTPQAA-----VPVVGSTIT 353
WD+ PPG+E++T Q K A + P+ + A Q A + + +
Sbjct: 189 WDIKPPGYENVTAEQAKLSGMFPLPGAPRQQPMDPSRLQAFMNQPAGGNADTSTLKPSNS 248
Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQF 533
RQA+RL+V NIP VT E + FFN Q++ + Q+ +P ++ Q+ D FA L
Sbjct: 249 RQAKRLFVYNIPESVTGETLLAFFNVQLNGLNVIQSV-DPCISAQVAQDHTFALLEFKSP 307
Query: 534 DETT 545
++ T
Sbjct: 308 NDAT 311
>UniRef50_Q5CXC0 Cluster: Splicing factor U2AF U2 snRNP auxiliary
factor large subunit; 3 RRM domains; n=3;
Cryptosporidium|Rep: Splicing factor U2AF U2 snRNP
auxiliary factor large subunit; 3 RRM domains -
Cryptosporidium parvum Iowa II
Length = 492
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/66 (33%), Positives = 38/66 (57%)
Frame = +3
Query: 342 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLN 521
S ++ R +YVGN+P G+T E +E+ N+ + + ++ GNPV++ IN D +AF
Sbjct: 109 SFTSKPLREVYVGNLPQGITVTELLEYINRSIIKNSVSHTNGNPVVSAWINSDGKYAFCE 168
Query: 522 SDQFDE 539
+E
Sbjct: 169 CRSIEE 174
>UniRef50_A4RFH0 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 620
Score = 48.0 bits (109), Expect = 1e-04
Identities = 24/67 (35%), Positives = 41/67 (61%)
Frame = +3
Query: 345 TITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNS 524
T +RQ++RL + N+P G TE+ + F N Q++ + +A+ +P LACQ+ D +FA +
Sbjct: 287 TNSRQSKRLILSNLPAGTTEDSLISFLNLQLNGLNVIEAS-DPCLACQMAPDGSFAMVEF 345
Query: 525 DQFDETT 545
+TT
Sbjct: 346 RSPSDTT 352
>UniRef50_A4VDP3 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 471
Score = 47.2 bits (107), Expect = 3e-04
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQ---AAGNPVLACQINLDKNFAFLNS 524
R ARRLY+GNIP + +E E+ + + +G Q + NP++ C+I+ FAF
Sbjct: 31 RHARRLYIGNIPETINQEYLSEWLYRSLEAAGGLQPSLPSENPIVKCEIDPKGRFAFTEL 90
Query: 525 DQFDETT 545
+ETT
Sbjct: 91 RSIEETT 97
>UniRef50_A2Q4R3 Cluster: RNA-binding region RNP-1; n=2; core
eudicotyledons|Rep: RNA-binding region RNP-1 - Medicago
truncatula (Barrel medic)
Length = 257
Score = 46.0 bits (104), Expect = 6e-04
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
TR ARR+YVG +P E+ FF+Q M + G + +G+ V+ IN +K FAF+
Sbjct: 174 TRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMR 233
Query: 528 QFDETT 545
+E +
Sbjct: 234 TVEEAS 239
>UniRef50_Q3EBP3 Cluster: Uncharacterized protein At2g33435.1; n=2;
Arabidopsis thaliana|Rep: Uncharacterized protein
At2g33435.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 979
Score = 41.9 bits (94), Expect = 0.009
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFL 518
TR+ RRLY N+P +E+ +E FN M SG G+ P ++C IN +K+ A +
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALV 930
>UniRef50_Q3E9P9 Cluster: Uncharacterized protein At4g36690.3; n=9;
Magnoliophyta|Rep: Uncharacterized protein At4g36690.3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 565
Score = 41.9 bits (94), Expect = 0.009
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 528 QFDETT 545
+E +
Sbjct: 295 SVEEAS 300
>UniRef50_O23212 Cluster: Splicing factor-like protein; n=22;
Eukaryota|Rep: Splicing factor-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 573
Score = 41.9 bits (94), Expect = 0.009
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 528 QFDETT 545
+E +
Sbjct: 295 SVEEAS 300
>UniRef50_A0EAC5 Cluster: Chromosome undetermined scaffold_86, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_86,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 402
Score = 41.9 bits (94), Expect = 0.009
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 360 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDE 539
A RLY+GN+P V ++ + QQM G G+PV+ Q+ + + F+ +E
Sbjct: 87 AVRLYLGNLPDNVDKDHLHNYIRQQMESHGAVLDPGDPVIQVQLQPGQKYCFVQFRSIEE 146
Query: 540 T 542
T
Sbjct: 147 T 147
>UniRef50_A7NXF8 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 902
Score = 39.1 bits (87), Expect = 0.066
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFL 518
TR RRLYV N+P +E+ ME N + SG+ G P ++C I+ +K A +
Sbjct: 423 TRPMRRLYVENLPVSSSEKALMECLNNFLLSSGINHVQGTPPCISCIIHKEKGQALV 479
>UniRef50_A5K369 Cluster: U2 snRNP auxiliary factor, putative; n=5;
Plasmodium|Rep: U2 snRNP auxiliary factor, putative -
Plasmodium vivax
Length = 914
Score = 38.3 bits (85), Expect = 0.12
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Frame = +3
Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQQMHL----SGLAQAAGN----PVLACQI-NLDKN 506
++ R+LY+GNIP +EE ++FFN + S L G+ P+L C+I N++
Sbjct: 541 KKQRKLYIGNIPPNSKQEELIDFFNNTLASIIKDSSLEIKIGDIVLLPILKCEIFNVESR 600
Query: 507 FAFL 518
F FL
Sbjct: 601 FCFL 604
>UniRef50_Q5CSE3 Cluster: Splicing factor U2AF like SnRNP auxilary
factor large subunit, RRM domain; n=2;
Cryptosporidium|Rep: Splicing factor U2AF like SnRNP
auxilary factor large subunit, RRM domain -
Cryptosporidium parvum Iowa II
Length = 330
Score = 37.9 bits (84), Expect = 0.15
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +3
Query: 351 TRQARRLYVGNIP--FGVTEEETMEFFNQQMHLSGLA-QAAGNPVLACQINLDK-NFAFL 518
TR+ RRLY GN+P G+TE + Q+M L GL NP+L K N+ F+
Sbjct: 52 TRRFRRLYFGNLPINLGLTESSFQQIVWQEMALRGLCLNPNENPILCVWFAQKKGNYGFV 111
Query: 519 NSDQFDET 542
+ET
Sbjct: 112 EFRTVEET 119
>UniRef50_A7AR94 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 400
Score = 37.1 bits (82), Expect = 0.27
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQ 530
T+ R +Y+GNIP +EF N + GNP I+ D ++AF+
Sbjct: 21 TKPYREIYIGNIPPQADVNNLLEFLNDALTAVNGTSIPGNPCQKGWISADSHYAFVEMRT 80
Query: 531 FDETT 545
+E +
Sbjct: 81 MEEAS 85
>UniRef50_Q10S20 Cluster: RNA recognition motif family protein,
expressed; n=7; Oryza sativa|Rep: RNA recognition motif
family protein, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 964
Score = 36.7 bits (81), Expect = 0.35
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA--QAAGNPVLACQINLDKNFAFL 518
TR RRL++ N+P TE+ + N+ + S + Q + P L+C IN DK AF+
Sbjct: 470 TRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKDKRQAFV 527
>UniRef50_UPI0000DB6CD5 Cluster: PREDICTED: similar to no on or off
transient A CG4211-PB, isoform B; n=1; Apis
mellifera|Rep: PREDICTED: similar to no on or off
transient A CG4211-PB, isoform B - Apis mellifera
Length = 565
Score = 36.3 bits (80), Expect = 0.47
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
RLY+GN+ VTEEE + F Q +S L +N +KNFAFL D
Sbjct: 151 RLYIGNLTNDVTEEEIQQMFQQYGEISELF-----------VNKEKNFAFLRMD 193
>UniRef50_UPI0000498FCC Cluster: U2 snRNP auxiliary factor large
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U2
snRNP auxiliary factor large subunit - Entamoeba
histolytica HM-1:IMSS
Length = 712
Score = 35.9 bits (79), Expect = 0.62
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQA--AGNPVLACQINLDKNFAFLNSD 527
R A+R+YVGNI +E++ ++ FN+ M + + ++N ++++AFL
Sbjct: 139 RAAKRIYVGNINSSTSEKDIVDAFNEAMRRGDYVDKNDTRDIITHIEVNYERSYAFLEFR 198
Query: 528 QFDETTQ 548
+E +
Sbjct: 199 TLEEAVK 205
>UniRef50_A2AEK1 Cluster: Cleavage stimulation factor, 3' pre-RNA
subunit 2; n=6; Bilateria|Rep: Cleavage stimulation
factor, 3' pre-RNA subunit 2 - Mus musculus (Mouse)
Length = 554
Score = 35.9 bits (79), Expect = 0.62
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
A +PV + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>UniRef50_O22794 Cluster: Putative splicing factor U2AF large chain;
n=2; Arabidopsis thaliana|Rep: Putative splicing factor
U2AF large chain - Arabidopsis thaliana (Mouse-ear
cress)
Length = 475
Score = 35.9 bits (79), Expect = 0.62
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLAC 485
TR+ RRLY N+P +E+ +E FN M SG G+ P ++C
Sbjct: 206 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISC 251
>UniRef50_Q4UCN0 Cluster: Snrnp splicing factor (U2AF), putative;
n=2; Theileria|Rep: Snrnp splicing factor (U2AF),
putative - Theileria annulata
Length = 486
Score = 35.9 bits (79), Expect = 0.62
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +3
Query: 312 TPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQI 491
T Q+ + +GS + R +Y+GNIP E M+ NQ + GNP L I
Sbjct: 90 TAQSGLEGIGS---KAFREIYIGNIPPVGDIEILMDIINQALISVNGTSMPGNPCLKGWI 146
Query: 492 NLDKNFAFLNSDQFDETT 545
+ D ++AF+ +E +
Sbjct: 147 SSDGHYAFIELRTMEEAS 164
>UniRef50_A1CA44 Cluster: RNP domain protein; n=13;
Pezizomycotina|Rep: RNP domain protein - Aspergillus
clavatus
Length = 378
Score = 35.9 bits (79), Expect = 0.62
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 297 NIVADTPQAAVPVVGSTITR--QARRLYVGNIPFGVTEEETMEFF 425
N A P AA P + + RRLY+GN+ + TE E EFF
Sbjct: 22 NGTAPAPAAAQPTTDAAAASADEGRRLYIGNLAYATTEGELKEFF 66
>UniRef50_Q0LJY9 Cluster: Response regulator receiver; n=1;
Herpetosiphon aurantiacus ATCC 23779|Rep: Response
regulator receiver - Herpetosiphon aurantiacus ATCC
23779
Length = 248
Score = 35.1 bits (77), Expect = 1.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 209 ALLGCTAAGIRAYHAITIQGDASGGSDSCQYCRRHT 316
AL AG++A IT+ G+A G D+ ++C +HT
Sbjct: 14 ALRAAMVAGLQATKEITVIGEAGSGEDAIEWCAQHT 49
>UniRef50_Q7RQR4 Cluster: KED; n=3; Plasmodium (Vinckeia)|Rep: KED -
Plasmodium yoelii yoelii
Length = 858
Score = 35.1 bits (77), Expect = 1.1
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 315 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ-QMHLSGLAQAAGNPVLACQI 491
P+ + + + + AR LYVGNIP + +E ++F N + L N L I
Sbjct: 399 PELGLSTIDANAEKTARELYVGNIPQNIDIQEIVKFLNTCLLILYNKENENENICLKACI 458
Query: 492 NLDKNFAFLNSDQFDETT 545
D +AF+ +T+
Sbjct: 459 RGDTRYAFVEFRSLQDTS 476
>UniRef50_Q8IBU0 Cluster: Putative uncharacterized protein
PF07_0066; n=3; Plasmodium|Rep: Putative uncharacterized
protein PF07_0066 - Plasmodium falciparum (isolate 3D7)
Length = 1125
Score = 34.7 bits (76), Expect = 1.4
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 327 VPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ-QMHLSGLAQAAGNPVLACQINLDK 503
+P + I + AR LYVGNIP + +E +++ N + L N L I D
Sbjct: 639 LPTIDVNIEKTARELYVGNIPQHIDIQEIVKYLNSCLLILYNKENENENICLKACIRGDT 698
Query: 504 NFAFLNSDQFDETT 545
++AF+ +T+
Sbjct: 699 HYAFVEFRNIQDTS 712
>UniRef50_Q2U8W5 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 104
Score = 34.7 bits (76), Expect = 1.4
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +3
Query: 276 AAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGL 452
AA + N A A + + RRLY+GN+ + TE E EFF GL
Sbjct: 18 AATEATTNGTAPAAPAQSTDAAAASADEGRRLYIGNLAYATTEGELKEFFKNYKVFLGL 76
>UniRef50_Q7RNT2 Cluster: 19096-22891; n=6; Plasmodium|Rep:
19096-22891 - Plasmodium yoelii yoelii
Length = 546
Score = 34.3 bits (75), Expect = 1.9
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 351 TRQARRLYVGNIP--FGVTEEETMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 518
TR+ RRLY GN+P G+TE E +M NPVL DK N+ F+
Sbjct: 256 TRKLRRLYFGNLPLHLGLTENAFQEIVWDEMKKRKFCNNENINPVLYVWFAKDKGNYGFV 315
Query: 519 NSDQFDET 542
+ET
Sbjct: 316 EFSTVEET 323
>UniRef50_Q6C1Y4 Cluster: Similarities with sp|P34761 Saccharomyces
cerevisiae YNL197c; n=1; Yarrowia lipolytica|Rep:
Similarities with sp|P34761 Saccharomyces cerevisiae
YNL197c - Yarrowia lipolytica (Candida lipolytica)
Length = 625
Score = 34.3 bits (75), Expect = 1.9
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 369 LYVGNIPFGVTEEETMEFFNQQ 434
LYVGN+P TEEE M+ F++Q
Sbjct: 516 LYVGNLPMNTTEEELMQLFSKQ 537
>UniRef50_Q9U1N0 Cluster: Hrp65 protein; n=3; Chironomus
tentans|Rep: Hrp65 protein - Chironomus tentans (Midge)
Length = 535
Score = 34.3 bits (75), Expect = 1.9
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
RLY+GN+ VTEEE E F+ +S IN +KNFAFL D
Sbjct: 114 RLYIGNLTSDVTEEELKELFSPYGEIS-----------EAFINAEKNFAFLKID 156
>UniRef50_A7S854 Cluster: Predicted protein; n=4; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1851
Score = 33.9 bits (74), Expect = 2.5
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +2
Query: 245 YHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVF 424
+H + + GD G C HT C A G YN C+ +T H + F
Sbjct: 1538 HHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTAGEHCELCDDGF 1590
Query: 425 QSTNASIGPGPGRRQPC 475
A PG ++ PC
Sbjct: 1591 YGNAADGTPGDCKQCPC 1607
Score = 33.1 bits (72), Expect = 4.4
Identities = 20/77 (25%), Positives = 28/77 (36%)
Frame = +2
Query: 245 YHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVF 424
+H + + GD G C HT C A G YN C+ +T H + F
Sbjct: 1642 HHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTTGEHCELCDDGF 1694
Query: 425 QSTNASIGPGPGRRQPC 475
PG ++ PC
Sbjct: 1695 YGNTTDGTPGDCKQCPC 1711
>UniRef50_A7PJ01 Cluster: Chromosome chr13 scaffold_17, whole genome
shotgun sequence; n=3; Magnoliophyta|Rep: Chromosome
chr13 scaffold_17, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 270
Score = 33.5 bits (73), Expect = 3.3
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFFNQ 431
R+YVGN+P+ +TE+E +FF++
Sbjct: 133 RIYVGNLPWDITEDEVRKFFSR 154
>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
proline-and glutamine-rich - Bombyx mori (Silk moth)
Length = 641
Score = 33.5 bits (73), Expect = 3.3
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Frame = +3
Query: 228 PPGFEHITPLQYKAMQAAGQIP--ANIVADTPQAAVPVVGSTITRQAR-RLYVGNIPFGV 398
PPG +++ P Q + + + ++ + D P P+ S + R RLY+GN+ V
Sbjct: 230 PPGQDNMKPAQREEIILSNKLKDLQGPLFDLP----PMEQSEVKFNGRSRLYIGNLTNDV 285
Query: 399 TEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
TEEE M+ F+ S L +N +KNF F+ D
Sbjct: 286 TEEEIMKMFSPFGEASELF-----------LNKEKNFGFIKMD 317
>UniRef50_A5GEF6 Cluster: RNP-1 like RNA-binding protein; n=1;
Geobacter uraniumreducens Rf4|Rep: RNP-1 like
RNA-binding protein - Geobacter uraniumreducens Rf4
Length = 85
Score = 33.1 bits (72), Expect = 4.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 363 RRLYVGNIPFGVTEEETMEFFN 428
R+L+VGN+PF TE+ EFF+
Sbjct: 3 RKLFVGNVPFTATEDHLKEFFS 24
>UniRef50_UPI00006CBD24 Cluster: hypothetical protein
TTHERM_00151210; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00151210 - Tetrahymena
thermophila SB210
Length = 554
Score = 32.7 bits (71), Expect = 5.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 360 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPV 476
A R+Y+GNIP V E+ +F +QM +G GNP+
Sbjct: 216 ALRVYIGNIPDPVDVEDVCKFVFEQMANAGGLLEPGNPL 254
>UniRef50_Q2JJY2 Cluster: Putative uncharacterized protein; n=2;
Synechococcus|Rep: Putative uncharacterized protein -
Synechococcus sp. (strain JA-2-3B'a(2-13))
(Cyanobacteria bacteriumYellowstone B-Prime)
Length = 98
Score = 32.7 bits (71), Expect = 5.8
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 327 RQLVVCRRQYWQESDPPLASP-CIVMA*YARIPAAVHP 217
RQ+V+ RRQ E PPL P C+ A A + AVHP
Sbjct: 32 RQVVLLRRQRAGEFGPPLGDPSCVFSAHSAWLRCAVHP 69
>UniRef50_Q70JP5 Cluster: Putative DIP2 protein; n=5; BEP clade|Rep:
Putative DIP2 protein - Triticum aestivum (Wheat)
Length = 259
Score = 32.7 bits (71), Expect = 5.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFFNQQMHL 443
+LYV N+ +GVT+E+ E F++ HL
Sbjct: 116 KLYVSNLHYGVTKEDLQELFSEMGHL 141
>UniRef50_Q6ID24 Cluster: At4g12630; n=6; Arabidopsis thaliana|Rep:
At4g12630 - Arabidopsis thaliana (Mouse-ear cress)
Length = 117
Score = 32.7 bits (71), Expect = 5.8
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 360 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-FAFLNSDQ 530
+R L+VGN+P G+ E E + F + L LA G N D++ FA + S Q
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQ 79
>UniRef50_Q57W18 Cluster: RNA-binding protein, putative; n=1;
Trypanosoma brucei|Rep: RNA-binding protein, putative -
Trypanosoma brucei
Length = 857
Score = 32.7 bits (71), Expect = 5.8
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 348 ITRQARRLYVGNIPFGVTEEETMEF 422
+ R++RR+ +GNIPF TEE+ +F
Sbjct: 310 VVRESRRIRLGNIPFIATEEDVKQF 334
>UniRef50_Q4N3F2 Cluster: U2 small nuclear ribonucleoprotein,
auxiliary factor, large subunit, putative; n=2;
Theileria|Rep: U2 small nuclear ribonucleoprotein,
auxiliary factor, large subunit, putative - Theileria
parva
Length = 380
Score = 32.7 bits (71), Expect = 5.8
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPV 476
++ +RLYVGN+P G ++ ++FFN + +A GN +
Sbjct: 53 KRQKRLYVGNLPSGTKLQDVVDFFNGAL----MAMVPGNTI 89
>UniRef50_UPI0000E47894 Cluster: PREDICTED: similar to scavenger
receptor cysteine-rich protein type 12 precursor; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
scavenger receptor cysteine-rich protein type 12
precursor - Strongylocentrotus purpuratus
Length = 2255
Score = 32.3 bits (70), Expect = 7.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 209 ALLGCTAAGIRAYHAITIQGDASGGSD-SCQYCRRHTTSCRAGGGFDYNTSSAK 367
A + C+ G+R + G + SD SCQ CR H +C+ DY+ S+ K
Sbjct: 1041 AAIQCSGPGLRECTSECPLGFYTSQSDRSCQPCRVHCQTCQQAISSDYSCSACK 1094
>UniRef50_UPI00006CBE3B Cluster: hypothetical protein
TTHERM_00318730; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00318730 - Tetrahymena
thermophila SB210
Length = 459
Score = 32.3 bits (70), Expect = 7.6
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 363 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDET 542
R+LY+GNIP G+ + N + + Q G+ ++ I+ + N+ F DE
Sbjct: 203 RKLYIGNIPPGLQPVKCQLMINSALKQLKVNQEPGDSCVSIWISPEGNYGFAEFRTPDEA 262
Query: 543 TQ 548
T+
Sbjct: 263 TK 264
>UniRef50_Q7ZUX2 Cluster: Cstf2 protein; n=2; Danio rerio|Rep: Cstf2
protein - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 339
Score = 32.3 bits (70), Expect = 7.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
AA + R R ++VGNIP+ TEE+ + F++
Sbjct: 10 AAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 46
>UniRef50_Q9VHP3 Cluster: CG8021-PA; n=3; Diptera|Rep: CG8021-PA -
Drosophila melanogaster (Fruit fly)
Length = 91
Score = 32.3 bits (70), Expect = 7.6
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 336 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF 515
+ S R + +L+VGN+P+ + +E +F++ H+ A V Q+ L K++ F
Sbjct: 1 MSSGFVRSSYKLFVGNLPWTIGSKELRTYFSKYGHV-----ANAEVVFDRQLGLSKHYGF 55
Query: 516 LNSDQFD 536
+ Q D
Sbjct: 56 VVFSQRD 62
>UniRef50_A7AU39 Cluster: RNA recognition motif (RRM)-containing
protein; n=1; Babesia bovis|Rep: RNA recognition motif
(RRM)-containing protein - Babesia bovis
Length = 383
Score = 32.3 bits (70), Expect = 7.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 339 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHL 443
G ++ RRLY+GN+P G T + +EF + + L
Sbjct: 51 GDDNKKRHRRLYIGNLPSGTTYKALVEFLSAALRL 85
>UniRef50_Q6C4U4 Cluster: Similarities with tr|O13845
Schizosaccharomyces pombe Putative splicing factor; n=1;
Yarrowia lipolytica|Rep: Similarities with tr|O13845
Schizosaccharomyces pombe Putative splicing factor -
Yarrowia lipolytica (Candida lipolytica)
Length = 621
Score = 32.3 bits (70), Expect = 7.6
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFF 425
RLYVGNI FGVTE E ++ F
Sbjct: 447 RLYVGNIYFGVTEGEIIQIF 466
>UniRef50_Q00880 Cluster: Cutinase negative acting protein; n=2;
Sordariomycetes|Rep: Cutinase negative acting protein -
Nectria haematococca
Length = 507
Score = 32.3 bits (70), Expect = 7.6
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 255 LQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
L Y + A PA AD + G T++ ++ L+VGN+P V ++ EFF +
Sbjct: 324 LDYANARPADANPAGRAADRAKRH----GDTLSPESDTLFVGNLPIDVDQDAVREFFGE 378
>UniRef50_A6SSI6 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 322
Score = 32.3 bits (70), Expect = 7.6
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +3
Query: 345 TITRQARRLYVGNIPFGVTEEETMEFFN 428
+I ++ ++VGNIP+G+TEE+ ++ F+
Sbjct: 2 SIKPPSKSVFVGNIPYGLTEEQIIDIFS 29
>UniRef50_Q04047 Cluster: Protein no-on-transient A; n=61;
Diptera|Rep: Protein no-on-transient A - Drosophila
melanogaster (Fruit fly)
Length = 700
Score = 32.3 bits (70), Expect = 7.6
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
RLYVGN+ +T++E E F +S + NLDKNF FL D
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFS-----------NLDKNFTFLKVD 345
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,611,462
Number of Sequences: 1657284
Number of extensions: 10884476
Number of successful extensions: 30696
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 29572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30676
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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