Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1067
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    31   0.11 
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    31   0.11 
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    31   0.15 
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.34 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    29   0.45 
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    28   1.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   1.4  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   1.8  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    27   1.8  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   2.4  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    27   2.4  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   3.2  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    26   3.2  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   4.2  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   7.3  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   9.7  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   9.7  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    25   9.7  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   9.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   9.7  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   9.7  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    25   9.7  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
 Frame = +3

Query: 216 WDVPPPGFEHITPLQYK---------AMQAAGQIPANIV--ADTPQAAV----PVVGSTI 350
           WD+ PPG+E +T  Q K         A +AA   P  ++  A + + ++    P +    
Sbjct: 135 WDIKPPGYELVTADQAKMSGVFPLPGAPRAAVTDPEKLLEFARSAEGSIIAPPPPLQPGA 194

Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 518
           +RQARRL V  IP    E+  + F       +   +       +  +  ++NFA L
Sbjct: 195 SRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPETKHFSSVNVCKEENFAIL 250


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 369 LYVGNIPFGVTEEETMEFFNQ 431
           ++VGNIP+ V+E++  E FNQ
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQ 29


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 339 GSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           G   T+Q RR+YVGN+ + V   E  EF  Q
Sbjct: 58  GQKYTQQERRVYVGNLSYQVRWFELKEFMGQ 88


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 369 LYVGNIPFGVTEEETMEFFNQ 431
           +YVGNIP+ + EE+ ++ F Q
Sbjct: 7   VYVGNIPYEMAEEQVIDIFKQ 27


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 366 RLYVGNIPFGVTEEETMEFFNQ 431
           +++VG +P   TEEE   FFNQ
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQ 269


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 249 TPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTI 350
           +P+ YKA+ A   +P   + + P+A VP   S I
Sbjct: 23  SPITYKALHANSPLPRCRIIEPPRATVPEAVSNI 56


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 291 PANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFF 425
           P  +    P    P  G+    + R LYV NI F V E++   FF
Sbjct: 735 PIQVFISDPLRRTPRSGAVY--EGRELYVTNIDFKVNEKDVETFF 777


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 363 RRLYVGNIPFGVTEEETME 419
           R +++GN+P G+TE+E  E
Sbjct: 206 RNVFLGNLPNGITEDEIRE 224


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 366 RLYVGNIPFGVTEEETMEFF 425
           RL+VG IP   T E+ M+FF
Sbjct: 5   RLFVGRIPPQATREDMMDFF 24


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 261 YKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQM 437
           + A  ++  I   I A TP    P   +        +YVGN+P   +EEE    F+ Q+
Sbjct: 395 FSAYSSSHGIHQRIPASTPTNTNPADQNP---PCNTIYVGNLPPSTSEEELKVLFSTQV 450


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 325 PCRWWVRL*HVKREGYMSATYPLASP 402
           P RWWV   H    G + A Y L  P
Sbjct: 550 PLRWWVFRFHSLNAGIIQAAYALCFP 575


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 360 ARRLYVGNIPFGVTEEETMEFF 425
           A+ +YVGN+ + VT EE    F
Sbjct: 54  AQSVYVGNVDYSVTPEELQSHF 75


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQ 431
           +Q+  +YVGN+ F  TEE+    F++
Sbjct: 29  KQSNCVYVGNLSFYTTEEQIYALFSK 54


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 315 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLS 446
           PQ    + G  I  Q      G+IP    +EET   F   +HLS
Sbjct: 597 PQFFSYINGYQIYLQQTNPATGSIPLKPIQEETFGAFQSNLHLS 640


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 352 VIVEPTTGTAACGVSATILAGI*PAACIA 266
           +I+    GT  CGV   ++  + P  CIA
Sbjct: 395 IIIYSVLGTYFCGVMVRLVLTLTPCVCIA 423


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +1

Query: 262 TRRCKRRVRFLPILSPTHHKLPCRWWVRL*HVKREGYMSATYPLASPKKKQWSFSINKCI 441
           T R K  VRF+ +    +  + C    R+  ++        YP  S  +   + + N C+
Sbjct: 367 TVRSKFPVRFVVLC--VYAIIGCLSIARILAIQNYNAPMIIYPAISFLETDNNVTTNVCV 424

Query: 442 YRAWPRPPATLF 477
            + W R P+T F
Sbjct: 425 GKEWYRYPSTFF 436


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 285 QIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 389
           Q P++  + T + + P V     +  R L++GNIP
Sbjct: 113 QTPSSEKSTTERESRPFVPPNSQQMRRMLFIGNIP 147


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 369 LYVGNIPFGVTEEETMEFFNQ 431
           LYVG +P G  E++   +F+Q
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQ 127


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 330 PVVGSTITRQARRLYVGNIPFG 395
           P VG+T+   A R +  N+P G
Sbjct: 192 PAVGATMAGSAMRTFPSNLPLG 213


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 181 INVHVDVSLRFTGMYRRRDSSISRHYNTRRCKRRVRFLPIL 303
           +NVH  V     G   R  +S++  Y+T     ++RF  IL
Sbjct: 608 LNVHRYVESHLNGPTERTAASLTNWYSTLLKNTQIRFRKIL 648


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 287 DSCQYCRRHTTSCRAGGGFDYNTSSAKVICR 379
           ++C  CR+  T C AG   D N +  +  CR
Sbjct: 24  EACDSCRKQKTRCLAGSVEDENRACLR--CR 52


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 282 GQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEE 410
           G +   +  DTP AAV +      R+ R+ +  N PF V E E
Sbjct: 311 GLVTKAVSLDTP-AAVYLYLINFHREYRKFFEENAPFSVDEVE 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,635
Number of Sequences: 5004
Number of extensions: 42291
Number of successful extensions: 125
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)