Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1067
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   5e-25
SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)            34   0.088
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 32   0.36 
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              30   1.1  
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 29   1.9  
SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16)                  29   1.9  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             29   2.5  
SB_50855| Best HMM Match : Ras (HMM E-Value=0)                         29   3.3  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)                 28   5.8  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 27   7.6  
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score =  111 bits (266), Expect = 5e-25
 Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 18/129 (13%)
 Frame = +3

Query: 216 WDVPPPGFEHITPLQYKAMQAAGQI---------PANIVADT-------PQAAVPVV--G 341
           WD+PP G+E ++ ++YK M+A GQI         PA  ++ T       P +AV  +  G
Sbjct: 496 WDIPPLGYEQVSAMEYKTMRANGQIAAPAIGTVIPATALSATQSGASVLPASAVASLPHG 555

Query: 342 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLN 521
           S +TRQARRLYVGNIPFGVTE   +EFFN +M  + L  A GNPV+A QIN ++NFAF+ 
Sbjct: 556 SQMTRQARRLYVGNIPFGVTENLMIEFFNAKMKEAKLNTAPGNPVIAAQINTEQNFAFIE 615

Query: 522 SDQFDETTQ 548
               +ETTQ
Sbjct: 616 LRSVEETTQ 624


>SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)
          Length = 170

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 21/77 (27%), Positives = 29/77 (37%)
 Frame = +2

Query: 245 YHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVF 424
           +H + + GD   G      C  HT  C A  G  YN       C+ +T   H    +  F
Sbjct: 94  HHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTAGEHCELCDDGF 146

Query: 425 QSTNASIGPGPGRRQPC 475
               A   PG  ++ PC
Sbjct: 147 YGNAADGTPGDCKQCPC 163


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 294 ANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           A  +A   QA          R  R ++VGNIP+  +EE+  E F++
Sbjct: 2   ATALAXIAQAQQKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSE 47


>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 215 LGCTAAGIRAYHAITIQGDASGGSDSCQYCRRHTTSC 325
           L   +  I+ YH   +  D S  SDSC+ CR  T  C
Sbjct: 84  LNTVSTRIKRYH---VDVDVSSSSDSCRICRDSTAGC 117


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 366 RLYVGNIPFGVTEEETMEFF 425
           R+Y+G +P+G TE++   FF
Sbjct: 4   RVYLGRLPYGTTEDDVRRFF 23


>SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16)
          Length = 91

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 221 CTAAGIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFD 346
           C+ A  R + ++   G ASGG DSCQ        C   G F+
Sbjct: 28  CSRAYSRLHESMVCAGRASGGIDSCQGDSGGPMVCEYNGKFN 69


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 348 ITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           + R+ R L+VGN+P  + EE+ ++ F +
Sbjct: 1   MVRETRHLWVGNLPENIREEDIVKHFTR 28


>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
          Length = 733

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 372 YVGNIPFGVTEEETMEFFNQQMHLSG 449
           ++GN+P+ V  E+ +EFF+    L G
Sbjct: 280 FLGNLPYDVEREDILEFFSSVKSLRG 305


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
 Frame = +3

Query: 285 QIPANIVA--DTPQAAVPVVGSTITRQARRL----YVGNIPFGVTEEETMEFFNQQMHLS 446
           Q+  N  A  + P    P+V   +  Q+ +L    YVGN+P  V + E  + F+Q     
Sbjct: 583 QVKTNWAARKNNPTQTKPLVWDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMFSQY---- 638

Query: 447 GLAQAAGNPVLACQINLDKNFAFLNS 524
                    +L  ++  DK +AF+N+
Sbjct: 639 -------GSILETKVFADKGYAFINA 657


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 314 TTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPGPGRRQ 469
           T + R  G   +N    ++ C Q   + HR+R + V+       G G  + Q
Sbjct: 71  TVAARRSGSPIFNFKEHRLFCGQPAKYNHRKRGSDVYPIPKGHDGEGEEKYQ 122


>SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 236 IRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAK 367
           I+  H ++ + + S  S  C  CR  T  C++      N S+++
Sbjct: 61  IKVVHTLSARPELSHCSGVCNICRHRTQECKSDDNKSLNGSNSR 104


>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
          Length = 67

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 360 ARRLYVGNIPFGVTEEETMEFF 425
           + R+Y+G +P+G  E++  +FF
Sbjct: 2   SNRVYLGRLPYGTREDDVKKFF 23


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 354 RQARRLYVGNIPFGVTEEETMEFF 425
           +Q   L+VGN+PF +T E+ ++ F
Sbjct: 71  KQRYILFVGNLPFDLTTEKVLDHF 94


>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 363 RRLYVGNIPFGVTEEETMEFFNQ 431
           ++L+VG +P   TE+  ME+F Q
Sbjct: 199 KKLFVGRLPESTTEKTLMEYFAQ 221


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 366 RLYVGNIPFGVTEEETMEFFN 428
           ++++G + FG TEE+  E+F+
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFS 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,168
Number of Sequences: 59808
Number of extensions: 352211
Number of successful extensions: 1005
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)