Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1067
         (550 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant r...    25   2.2  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   2.9  
AJ250916-1|CAB91840.1|  435|Anopheles gambiae serine protease pr...    24   2.9  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    24   3.8  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   6.6  

>AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant
           receptor Or5 protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 365 SRLTCYSRTHHRHGSLW 315
           S  +CYS T   +GSLW
Sbjct: 320 SEASCYSLTRAAYGSLW 336


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 250 RHYNTRRCKR 279
           RHY TRRC+R
Sbjct: 423 RHYQTRRCQR 432


>AJ250916-1|CAB91840.1|  435|Anopheles gambiae serine protease
           protein.
          Length = 435

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 239 RAYHAITIQGDASGGSDSCQ 298
           R Y+     G+  GG DSCQ
Sbjct: 363 RIYNTTLCAGEYDGGKDSCQ 382


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 218 GCTAAGIRAYHAIT-IQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLW 394
           GC A     YH +  +  DA+  S   Q            GGFD    +  ++CR+   W
Sbjct: 239 GCVAP--YGYHNLMPLSTDANLFSQEVQRANVSGNLDAPEGGFDAIMQA--IVCREQIGW 294

Query: 395 RHRRRNNGVFQSTNA 439
           R + R   +F ST+A
Sbjct: 295 REKARRLLLF-STDA 308


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 526 SEFKNAKFLSKLIWQAKTGLPAAWAR 449
           S F  + FLS  ++ ++TGLP  +A+
Sbjct: 4   SHFTKSLFLSLSLFLSQTGLPDPFAK 29


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,924
Number of Sequences: 2352
Number of extensions: 10989
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)