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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1067
         (550 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X64044-1|CAA45409.1|  475|Homo sapiens splicing factor U2AF prot...   170   3e-42
BC030574-1|AAH30574.1|  471|Homo sapiens U2 small nuclear RNA au...   170   3e-42
BC008740-1|AAH08740.1|  471|Homo sapiens U2 small nuclear RNA au...   170   3e-42
Z95327-3|CAI42680.1|  577|Homo sapiens cleavage stimulation fact...    33   0.87 
Z83819-6|CAB06072.2|  577|Homo sapiens cleavage stimulation fact...    33   0.87 
M85085-1|AAA35724.1|  577|Homo sapiens cleavage stimulation fact...    33   0.87 
BT009778-1|AAP88780.1|  577|Homo sapiens cleavage stimulation fa...    33   0.87 
BC033135-1|AAH33135.1|  559|Homo sapiens Similar to cleavage sti...    33   0.87 
BC017712-1|AAH17712.1|  577|Homo sapiens cleavage stimulation fa...    33   0.87 
Y11289-1|CAA72157.1|  471|Homo sapiens p54nrb protein.                 31   2.7  
U89867-1|AAC51852.1|  471|Homo sapiens nuclear matrix protein 55...    31   2.7  
U02493-1|AAA03427.1|  471|Homo sapiens 54 kDa protein protein.         31   2.7  
L14599-1|AAC37578.1|  471|Homo sapiens protein ( Human mRNA, com...    31   2.7  
CR456761-1|CAG33042.1|  471|Homo sapiens NONO protein.                 31   2.7  
BC069639-1|AAH69639.1|  471|Homo sapiens non-POU domain containi...    31   2.7  
BC069616-1|AAH69616.1|  471|Homo sapiens non-POU domain containi...    31   2.7  
BC028299-1|AAH28299.1|  471|Homo sapiens non-POU domain containi...    31   2.7  
BC028239-1|AAH28239.1|  616|Homo sapiens cleavage stimulation fa...    31   2.7  
BC012141-1|AAH12141.1|  471|Homo sapiens NONO protein protein.         31   2.7  
BC003129-1|AAH03129.1|  471|Homo sapiens NONO protein protein.         31   2.7  
BC002364-1|AAH02364.1|  471|Homo sapiens non-POU domain containi...    31   2.7  
AY130299-1|AAN05429.1|  616|Homo sapiens tCstF-64 protein.             31   2.7  
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated...    31   3.5  
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ...    31   3.5  
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc...    31   3.5  
X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    30   6.1  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               30   6.1  
BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.        30   6.1  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        30   6.1  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    30   6.1  

>X64044-1|CAA45409.1|  475|Homo sapiens splicing factor U2AF
           protein.
          Length = 475

 Score =  170 bits (413), Expect = 3e-42
 Identities = 84/120 (70%), Positives = 89/120 (74%), Gaps = 8/120 (6%)
 Frame = +3

Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 368
           YWDVPPPGFEHITP+QYKAMQAAGQIPA  +  T            VPVVGS +TRQARR
Sbjct: 91  YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150

Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETTQ 548
           LYVGNIPFG+TEE  M+FFN QM L GL QA GNPVLA QIN DKNFAFL     DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210


>BC030574-1|AAH30574.1|  471|Homo sapiens U2 small nuclear RNA
           auxiliary factor 2 protein.
          Length = 471

 Score =  170 bits (413), Expect = 3e-42
 Identities = 84/120 (70%), Positives = 89/120 (74%), Gaps = 8/120 (6%)
 Frame = +3

Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 368
           YWDVPPPGFEHITP+QYKAMQAAGQIPA  +  T            VPVVGS +TRQARR
Sbjct: 91  YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150

Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETTQ 548
           LYVGNIPFG+TEE  M+FFN QM L GL QA GNPVLA QIN DKNFAFL     DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210


>BC008740-1|AAH08740.1|  471|Homo sapiens U2 small nuclear RNA
           auxiliary factor 2 protein.
          Length = 471

 Score =  170 bits (413), Expect = 3e-42
 Identities = 84/120 (70%), Positives = 89/120 (74%), Gaps = 8/120 (6%)
 Frame = +3

Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 368
           YWDVPPPGFEHITP+QYKAMQAAGQIPA  +  T            VPVVGS +TRQARR
Sbjct: 91  YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150

Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETTQ 548
           LYVGNIPFG+TEE  M+FFN QM L GL QA GNPVLA QIN DKNFAFL     DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210


>Z95327-3|CAI42680.1|  577|Homo sapiens cleavage stimulation factor,
           3' pre-RNA, subunit 2, 64kDa protein.
          Length = 577

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           A + V    + R  R ++VGNIP+  TEE+  + F++
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38


>Z83819-6|CAB06072.2|  577|Homo sapiens cleavage stimulation factor,
           3' pre-RNA, subunit 2, 64kDa protein.
          Length = 577

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           A + V    + R  R ++VGNIP+  TEE+  + F++
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38


>M85085-1|AAA35724.1|  577|Homo sapiens cleavage stimulation factor
           protein.
          Length = 577

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           A + V    + R  R ++VGNIP+  TEE+  + F++
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38


>BT009778-1|AAP88780.1|  577|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 2, 64kDa protein.
          Length = 577

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           A + V    + R  R ++VGNIP+  TEE+  + F++
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38


>BC033135-1|AAH33135.1|  559|Homo sapiens Similar to cleavage
           stimulation factor, 3' pre-RNA, subunit 2, 64kD protein.
          Length = 559

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           A + V    + R  R ++VGNIP+  TEE+  + F++
Sbjct: 1   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 37


>BC017712-1|AAH17712.1|  577|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 2, 64kDa protein.
          Length = 577

 Score = 32.7 bits (71), Expect = 0.87
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           A + V    + R  R ++VGNIP+  TEE+  + F++
Sbjct: 2   AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38


>Y11289-1|CAA72157.1|  471|Homo sapiens p54nrb protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>U89867-1|AAC51852.1|  471|Homo sapiens nuclear matrix protein 55
           protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>U02493-1|AAA03427.1|  471|Homo sapiens 54 kDa protein protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>L14599-1|AAC37578.1|  471|Homo sapiens protein ( Human mRNA,
           complete cds. ).
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>CR456761-1|CAG33042.1|  471|Homo sapiens NONO protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>BC069639-1|AAH69639.1|  471|Homo sapiens non-POU domain containing,
           octamer-binding protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>BC069616-1|AAH69616.1|  471|Homo sapiens non-POU domain containing,
           octamer-binding protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>BC028299-1|AAH28299.1|  471|Homo sapiens non-POU domain containing,
           octamer-binding protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>BC028239-1|AAH28239.1|  616|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
           protein.
          Length = 616

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           +++ V    + R  R ++VGNIP+  TEE+  + F++
Sbjct: 2   SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE 38


>BC012141-1|AAH12141.1|  471|Homo sapiens NONO protein protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>BC003129-1|AAH03129.1|  471|Homo sapiens NONO protein protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>BC002364-1|AAH02364.1|  471|Homo sapiens non-POU domain containing,
           octamer-binding protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
           PPP      P+     QA+ Q    +  D      P  G     Q  RL+VGN+P  +TE
Sbjct: 36  PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87

Query: 405 EETMEFFNQ 431
           EE  + F +
Sbjct: 88  EEMRKLFEK 96


>AY130299-1|AAN05429.1|  616|Homo sapiens tCstF-64 protein.
          Length = 616

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           +++ V    + R  R ++VGNIP+  TEE+  + F++
Sbjct: 2   SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE 38


>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 3664

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 348 ITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           + R+ R L+VGN+P  V EE+ +E F +
Sbjct: 1   MVRETRHLWVGNLPENVREEKIIEHFKR 28


>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 3664

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 348 ITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           + R+ R L+VGN+P  V EE+ +E F +
Sbjct: 1   MVRETRHLWVGNLPENVREEKIIEHFKR 28


>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
           transcription cofactor protein.
          Length = 3664

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 348 ITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           + R+ R L+VGN+P  V EE+ +E F +
Sbjct: 1   MVRETRHLWVGNLPENVREEKIIEHFKR 28


>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
           +P  +  D  + A P V  T T +   LY+GN+ +  T+E+  E
Sbjct: 56  LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
           +P  +  D  + A P V  T T +   LY+GN+ +  T+E+  E
Sbjct: 56  LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99


>BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
           +P  +  D  + A P V  T T +   LY+GN+ +  T+E+  E
Sbjct: 56  LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
           +P  +  D  + A P V  T T +   LY+GN+ +  T+E+  E
Sbjct: 56  LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
           +P  +  D  + A P V  T T +   LY+GN+ +  T+E+  E
Sbjct: 56  LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,174,993
Number of Sequences: 237096
Number of extensions: 1710863
Number of successful extensions: 4074
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4071
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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