Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1067
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF prot... 170 3e-42
BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA au... 170 3e-42
BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA au... 170 3e-42
Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation fact... 33 0.87
Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation fact... 33 0.87
M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation fact... 33 0.87
BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation fa... 33 0.87
BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage sti... 33 0.87
BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation fa... 33 0.87
Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein. 31 2.7
U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55... 31 2.7
U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein. 31 2.7
L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA, com... 31 2.7
CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein. 31 2.7
BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containi... 31 2.7
BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containi... 31 2.7
BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containi... 31 2.7
BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation fa... 31 2.7
BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein. 31 2.7
BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein. 31 2.7
BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containi... 31 2.7
AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein. 31 2.7
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 31 3.5
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 31 3.5
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 31 3.5
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 30 6.1
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 30 6.1
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 30 6.1
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 30 6.1
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 30 6.1
>X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF
protein.
Length = 475
Score = 170 bits (413), Expect = 3e-42
Identities = 84/120 (70%), Positives = 89/120 (74%), Gaps = 8/120 (6%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 368
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETTQ 548
LYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA QIN DKNFAFL DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210
>BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA
auxiliary factor 2 protein.
Length = 471
Score = 170 bits (413), Expect = 3e-42
Identities = 84/120 (70%), Positives = 89/120 (74%), Gaps = 8/120 (6%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 368
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETTQ 548
LYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA QIN DKNFAFL DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210
>BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA
auxiliary factor 2 protein.
Length = 471
Score = 170 bits (413), Expect = 3e-42
Identities = 84/120 (70%), Positives = 89/120 (74%), Gaps = 8/120 (6%)
Frame = +3
Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQARR 368
YWDVPPPGFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQARR
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 150
Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETTQ 548
LYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA QIN DKNFAFL DETTQ
Sbjct: 151 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 210
>Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 32.7 bits (71), Expect = 0.87
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 32.7 bits (71), Expect = 0.87
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation factor
protein.
Length = 577
Score = 32.7 bits (71), Expect = 0.87
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 32.7 bits (71), Expect = 0.87
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage
stimulation factor, 3' pre-RNA, subunit 2, 64kD protein.
Length = 559
Score = 32.7 bits (71), Expect = 0.87
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 1 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 37
>BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 32.7 bits (71), Expect = 0.87
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
A + V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55
protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA,
complete cds. ).
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
protein.
Length = 616
Score = 31.1 bits (67), Expect = 2.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
+++ V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 31.1 bits (67), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PPP P+ QA+ Q + D P G Q RL+VGN+P +TE
Sbjct: 36 PPP-----PPIPANGQQASSQ-NEGLTIDLKNFRKP--GEKTFTQRSRLFVGNLPPDITE 87
Query: 405 EETMEFFNQ 431
EE + F +
Sbjct: 88 EEMRKLFEK 96
>AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein.
Length = 616
Score = 31.1 bits (67), Expect = 2.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 321 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
+++ V + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.7 bits (66), Expect = 3.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 348 ITRQARRLYVGNIPFGVTEEETMEFFNQ 431
+ R+ R L+VGN+P V EE+ +E F +
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.7 bits (66), Expect = 3.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 348 ITRQARRLYVGNIPFGVTEEETMEFFNQ 431
+ R+ R L+VGN+P V EE+ +E F +
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 30.7 bits (66), Expect = 3.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 348 ITRQARRLYVGNIPFGVTEEETMEFFNQ 431
+ R+ R L+VGN+P V EE+ +E F +
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKR 28
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 29.9 bits (64), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 29.9 bits (64), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 29.9 bits (64), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 29.9 bits (64), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 29.9 bits (64), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETME 419
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,174,993
Number of Sequences: 237096
Number of extensions: 1710863
Number of successful extensions: 4074
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4071
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -