Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1067
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U79157-1|AAC26982.1|  496|Caenorhabditis elegans splicing factor...   160   7e-40
AC024875-3|AAK29989.1|  496|Caenorhabditis elegans U2af splicing...   160   7e-40
AC024875-2|AAM44400.1|  471|Caenorhabditis elegans U2af splicing...   160   7e-40
AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing...   160   7e-40
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    32   0.31 
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z81108-1|CAB03236.1|   83|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81108-4|CAB03237.1|   85|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF047662-1|AAC04442.1|  248|Caenorhabditis elegans Suppressor pr...    28   3.9  
Z99279-4|CAB16494.1|  121|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81037-3|CAB02750.1|  205|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    27   8.9  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    27   8.9  
AF040642-5|AAN73870.2|  138|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U79157-1|AAC26982.1|  496|Caenorhabditis elegans splicing factor
           U2AF65 protein.
          Length = 496

 Score =  160 bits (388), Expect = 7e-40
 Identities = 74/111 (66%), Positives = 86/111 (77%)
 Frame = +3

Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 392
           +WDVPP GFE  TP++YK MQAAGQ+P   V    Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 193

Query: 393 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETT 545
           G  EE  ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+     DETT
Sbjct: 194 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETT 244


>AC024875-3|AAK29989.1|  496|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform a protein.
          Length = 496

 Score =  160 bits (388), Expect = 7e-40
 Identities = 74/111 (66%), Positives = 86/111 (77%)
 Frame = +3

Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 392
           +WDVPP GFE  TP++YK MQAAGQ+P   V    Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 193

Query: 393 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETT 545
           G  EE  ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+     DETT
Sbjct: 194 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETT 244


>AC024875-2|AAM44400.1|  471|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform d protein.
          Length = 471

 Score =  160 bits (388), Expect = 7e-40
 Identities = 74/111 (66%), Positives = 86/111 (77%)
 Frame = +3

Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 392
           +WDVPP GFE  TP++YK MQAAGQ+P   V    Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 113 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 168

Query: 393 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETT 545
           G  EE  ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+     DETT
Sbjct: 169 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETT 219


>AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform c protein.
          Length = 474

 Score =  160 bits (388), Expect = 7e-40
 Identities = 74/111 (66%), Positives = 86/111 (77%)
 Frame = +3

Query: 213 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 392
           +WDVPP GFE  TP++YK MQAAGQ+P   V    Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 116 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 171

Query: 393 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQFDETT 545
           G  EE  ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+     DETT
Sbjct: 172 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETT 222


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 363 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLAC 485
           R +YVGN+P GV   E +E FN        A+ A  P  L C
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPC 204


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 363 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLAC 485
           R +YVGN+P GV   E +E FN        A+ A  P  L C
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPC 204


>Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical
           protein F11A10.7 protein.
          Length = 394

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLNSDQ 530
           ++VGN+PF +TE+  + FF+ Q+   G  +A    V        K FAF+N  Q
Sbjct: 248 IFVGNLPFEITEDALITFFSAQI---GPVEAV-RIVRDKDTGKGKGFAFVNFKQ 297


>Z81108-1|CAB03236.1|   83|Caenorhabditis elegans Hypothetical
           protein R09B3.2 protein.
          Length = 83

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 369 LYVGNIPFGVTEEETMEFFN 428
           +YVGN PF  TEEE   FF+
Sbjct: 7   VYVGNAPFQTTEEELGNFFS 26


>Z81108-4|CAB03237.1|   85|Caenorhabditis elegans Hypothetical
           protein R09B3.3 protein.
          Length = 85

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 369 LYVGNIPFGVTEEETMEFFNQQMHLSGL 452
           +YVGN PF  TE++   +F+Q  ++S +
Sbjct: 6   VYVGNAPFQTTEDDLGNYFSQAGNVSNV 33


>Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical
           protein R06C1.4 protein.
          Length = 84

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 357 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGL 452
           Q   +YVGN+P+  TEEE   +F    H++ +
Sbjct: 4   QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNV 35


>AF047662-1|AAC04442.1|  248|Caenorhabditis elegans Suppressor
           protein 12 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 324 AVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
           A PVVGS  T    +++VG +P+  +++   E+F Q
Sbjct: 23  AEPVVGSRDT-MFTKIFVGGLPYHTSDKTLHEYFEQ 57


>Z99279-4|CAB16494.1|  121|Caenorhabditis elegans Hypothetical
           protein Y57G11A.5 protein.
          Length = 121

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 363 RRLYVGNIPFGVTEEE 410
           R++YVGN+PF  TE+E
Sbjct: 17  RQVYVGNMPFDATEKE 32


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
 Frame = +3

Query: 210 LYWDVPPPGFEHITPLQYKAMQAAGQIPANI----VADTPQAAVPVVGSTITRQARRLYV 377
           L W+      EH  P       +A  +  +     V  TP+   P V +T TR A RL  
Sbjct: 619 LSWEETEEDEEHAVPTTTPLAPSAPTVRVSTQRAPVPTTPRPTAPAVQTTTTR-ASRLET 677

Query: 378 GNIPFGVTEEETME 419
             +P    E+E  E
Sbjct: 678 TRVPVKTVEDEEEE 691


>Z81037-3|CAB02750.1|  205|Caenorhabditis elegans Hypothetical
           protein C17E4.5 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 360 ARRLYVGNIPFGVTEEETMEFFN 428
           A+ +YVGN+ +G T EE  + F+
Sbjct: 77  AKSVYVGNVDYGATAEEIEQHFH 99


>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 323  CRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPG 454
            C+ G   D N    KVI R   +     RN+ V     AS GPG
Sbjct: 1099 CKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPG 1142


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 323  CRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPG 454
            C+ G   D N    KVI R   +     RN+ V     AS GPG
Sbjct: 1099 CKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPG 1142


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
            protein W02B9.1b protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 323  CRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPG 454
            C+ G   D N    KVI R   +     RN+ V     AS GPG
Sbjct: 1099 CKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPG 1142


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
            protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 323  CRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPG 454
            C+ G   D N    KVI R   +     RN+ V     AS GPG
Sbjct: 1099 CKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPG 1142


>AF040642-5|AAN73870.2|  138|Caenorhabditis elegans Hypothetical
           protein C50D2.5 protein.
          Length = 138

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 363 RRLYVGNIPFGVTEEETMEFFNQ 431
           R LY+ N+P+ +T EE  E F +
Sbjct: 19  RILYIKNLPYKITTEEMYEIFGK 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,282
Number of Sequences: 27780
Number of extensions: 256701
Number of successful extensions: 697
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)