Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1067
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   4.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 547 CVVSSN*SEFKNAKFLSKLIWQAKTGL 467
           CV + +  +F+NA  + + I  AKTG+
Sbjct: 13  CVGALSIKDFQNAIRMGQSICMAKTGI 39


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 218 GCTAAGIRAYHAITIQGDASGGSDSCQY 301
           G TAA   A  A      A+ G  SC+Y
Sbjct: 123 GSTAASSAALAAAAAVDAATAGDKSCRY 150


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 199 VSLRFTGMYRRRDSSISRHYNTR 267
           + LR    Y  + S +SRHY+TR
Sbjct: 286 LDLRSQLEYDLQTSIMSRHYSTR 308


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 KAMQAAGQIPANIVADTPQ 320
           KA+Q      ANI+AD P+
Sbjct: 292 KALQGDDLRTANIIADDPE 310


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 348 ITRQARRLYVGNIPFGVTEEETMEFFN 428
           ITR    L V   P   TE E   FF+
Sbjct: 482 ITRDISSLVVQEQPTPTTESEERRFFS 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,397
Number of Sequences: 438
Number of extensions: 3423
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)