Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1067
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 49 2e-06
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 42 3e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 42 3e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 42 3e-04
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.17
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.29
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.38
At3g46300.1 68416.m05011 hypothetical protein 31 0.51
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 30 0.89
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 29 1.5
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 1.5
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 29 1.5
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 2.0
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 2.0
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 2.0
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 2.7
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 2.7
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 29 2.7
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 28 3.6
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 28 3.6
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 28 3.6
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 28 3.6
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 28 3.6
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 3.6
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 3.6
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 3.6
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 28 4.7
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 4.7
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 28 4.7
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 28 4.7
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 6.2
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 27 6.2
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 27 6.2
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 27 6.2
At2g29670.1 68415.m03606 expressed protein 27 6.2
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 27 8.3
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)... 27 8.3
At5g06100.1 68418.m00677 myb family transcription factor (MYB33)... 27 8.3
At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /... 27 8.3
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 8.3
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 288 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMH-LSGLAQAA 464
+P + P V + TR ARR+YVG +P E+ FF+Q M + G
Sbjct: 230 VPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGP 289
Query: 465 GNPVLACQINLDKNFAFLNSDQFDETT 545
G+ V+ IN +K FAF+ +E +
Sbjct: 290 GDAVVNVYINHEKKFAFVEMRSVEEAS 316
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 528 QFDETT 545
+E +
Sbjct: 295 SVEEAS 300
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 528 QFDETT 545
+E +
Sbjct: 295 SVEEAS 300
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLNSD 527
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 528 QFDETT 545
+E +
Sbjct: 295 SVEEAS 300
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFL 518
TR+ RRLY N+P +E+ +E FN M SG G+ P ++C IN +K+ A +
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALV 930
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 360 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN-FAFLNSDQ 530
+R L+VGN+P G+ E E + F + L LA G N D++ FA + S Q
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQ 79
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 315 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
P PV + +A LY+G IP G E E FF+Q
Sbjct: 44 PARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQ 82
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 363 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFL 518
R +++GN+PF V +EE + F + +L +A + +N+ K A++
Sbjct: 283 RTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAV-RVIRDPHLNIGKGIAYV 333
>At3g46300.1 68416.m05011 hypothetical protein
Length = 141
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 215 LGCTAAGIRAYHAITIQGDASG-GSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTL 391
+ C +R+Y T + + G G D RRH SC GGG +AK R +
Sbjct: 57 ISCRQMYLRSYTFSTEENEEDGDGGDGEAVTRRHNQSCFRGGG--GRKKAAKNAMRNNKT 114
Query: 392 WRHR 403
W R
Sbjct: 115 WSCR 118
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 30.3 bits (65), Expect = 0.89
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFFN 428
RL+V N+P+ TEEE ME F+
Sbjct: 262 RLFVRNLPYTATEEELMEHFS 282
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 318 QAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 431
Q AV GS+I +LY+ N+ +GV+ E+ E F++
Sbjct: 94 QTAVVGGGSSI-ETGTKLYISNLDYGVSNEDIKELFSE 130
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFFNQ 431
RLYVGN+P+ +T E + F +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGE 138
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 363 RRLYVGNIPFGVTEEETMEFFNQ 431
R LY+ N+PF +T E+T + F +
Sbjct: 20 RLLYICNLPFSITSEDTYDLFGR 42
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 357 QARRLYVGNIPFGVTEEETMEFFNQ 431
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 357 QARRLYVGNIPFGVTEEETMEFFNQ 431
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 357 QARRLYVGNIPFGVTEEETMEFFNQ 431
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 363 RRLYVGNIPFGVTEEETMEFFNQ 431
R LYV N+PF +T EE + F +
Sbjct: 19 RVLYVRNLPFNITSEEMYDIFGK 41
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQ 431
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSK 29
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQ 431
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSK 29
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQ 431
RQ +++VGN+P + + E EFF Q
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQ 187
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 357 QARRLYVGNIPFGVTEEETMEFF 425
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 357 QARRLYVGNIPFGVTEEETMEFF 425
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 285 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 389
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 285 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 389
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQ 431
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQ 431
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 351 TRQARRLYVGNIPFGVTEEETMEFFNQ 431
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 354 RQARRLYVGNIPFGVTEEETMEFFNQ 431
R + +Y+GN+ F TEE+ E F++
Sbjct: 31 RASTTVYIGNVSFYTTEEQLYELFSR 56
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 360 ARRLYVGNIPFGVTEEE 410
ARR+Y+GNIP VT E+
Sbjct: 75 ARRVYIGNIPRTVTNEQ 91
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 357 QARRLYVGNIPFGVTEEETME 419
Q R ++VGNIP+ TEE+ E
Sbjct: 7 QRRCVFVGNIPYDATEEQLRE 27
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 123 NVFFLGIETFVGGLYLPPSYLRKYVIQ*LFLEI--VIKALQRY 1
NVF L ++T V + PP + +YV F+ ++KA Y
Sbjct: 421 NVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNAY 463
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 123 NVFFLGIETFVGGLYLPPSYLRKYVIQ*LFLEI--VIKALQRY 1
NVF L ++T V + PP + +YV F+ ++KA Y
Sbjct: 1041 NVFLLSLKTMVYSMRKPPQHFEEYVQNHYFVRSHDIVKACNAY 1083
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 357 QARRLYVGNIPFGVTEEETMEFFNQ 431
+ ++++VG IP V ++E EFF Q
Sbjct: 128 KTKKIFVGGIPSSVDDDEFKEFFMQ 152
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +3
Query: 225 PPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 404
PP ++PLQ + +I + A+ +V + R+A+ V PF T
Sbjct: 39 PPSRASSVSPLQASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETL 98
Query: 405 EETMEFFNQQM 437
E + N+Q+
Sbjct: 99 VEVLYNINEQL 109
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFFNQQ 434
RLYVGN+ +GV + FN+Q
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQ 272
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFFNQQ 434
RLYVGN+ +GV + FN+Q
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQ 280
>At2g29670.1 68415.m03606 expressed protein
Length = 536
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 336 VGSTITRQARRLYVGNIPFGV-TEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFA 512
+ ++ ++ R+ +V ++ V EE+T F + M+ + L+Q NP+L F
Sbjct: 389 IDDSLDQETRKRFVSHVEARVEAEEDTGYFKTELMYQTELSQEPNNPLLLANY---AQFL 445
Query: 513 FLNSDQFDETTQ 548
+L S+ D +
Sbjct: 446 YLVSNDHDRAEE 457
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 357 QARRLYVGNIPFGVTEEETMEFFN 428
Q R + VGN+ G TE + EFF+
Sbjct: 4 QVRSVKVGNLSSGATEHDIKEFFS 27
>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 520
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 229 RRDSSISRHYNTRRCKRRVRFLPILSPTHHKLPCRW 336
R D+ I ++NTR +R+ LP+ P H W
Sbjct: 119 RTDNEIKNYWNTRIKRRQRAGLPLYPPEMHVEALEW 154
>At5g06100.1 68418.m00677 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 451
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 229 RRDSSISRHYNTRRCKRRVRFLPILSPTHHKLPCRW 336
R D+ I ++NTR +R+ LP+ P H W
Sbjct: 119 RTDNEIKNYWNTRIKRRQRAGLPLYPPEMHVEALEW 154
>At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
(Pectinase) {Agrobacterium tumefaciens}; contains
PF00295: Glycosyl hydrolases family 28
Length = 475
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 367 GYMSATYPLASPKKKQWSFSINKCIYR 447
GY S +PL+ P+ Q SI +C YR
Sbjct: 449 GYASDVFPLSCPQLLQKKGSIAQCSYR 475
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 366 RLYVGNIPFGVTEEETMEFF 425
+LYVG IP+ TE+E +F
Sbjct: 162 KLYVGGIPYQSTEDEIRSYF 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,964
Number of Sequences: 28952
Number of extensions: 237837
Number of successful extensions: 660
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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