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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1064
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P...   262   4e-69
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B...   257   2e-67
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ...   241   1e-62
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ...   236   3e-61
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ...   234   2e-60
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498...   232   7e-60
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;...   221   2e-56
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI...   218   9e-56
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;...   215   9e-55
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri...   210   2e-53
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ...   210   2e-53
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ...   209   6e-53
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ...   204   2e-51
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp...   199   6e-50
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol...   198   1e-49
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|...   196   4e-49
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ...   191   1e-47
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI...   189   5e-47
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na...   186   5e-46
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre...   178   9e-44
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|...   177   3e-43
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|...   177   3e-43
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ...   176   4e-43
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F...   173   3e-42
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ...   170   3e-41
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or...   169   7e-41
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob...   164   2e-39
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro...   160   3e-38
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na...   159   8e-38
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R...   158   1e-37
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R...   151   2e-35
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu...   149   5e-35
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N...   149   6e-35
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co...   139   5e-32
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI...   127   2e-28
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ...   123   5e-27
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th...   122   6e-27
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ...   122   8e-27
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di...   117   2e-25
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri...   111   2e-23
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl...   111   2e-23
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub...   110   4e-23
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M...   109   6e-23
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|...   109   6e-23
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c...   109   8e-23
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B...   109   8e-23
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...   107   3e-22
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=...   107   3e-22
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|...   105   8e-22
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....   105   1e-21
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4...   104   2e-21
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A...   103   6e-21
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ...   101   2e-20
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;...   100   7e-20
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid...    99   1e-19
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ...    98   2e-19
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ...    97   3e-19
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    97   3e-19
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa...    96   8e-19
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=...    95   2e-18
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=...    94   3e-18
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl...    92   1e-17
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh...    91   2e-17
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac...    91   3e-17
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil...    90   6e-17
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap...    88   2e-16
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob...    86   9e-16
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni...    85   2e-15
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte...    84   3e-15
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P...    83   6e-15
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B...    82   1e-14
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit...    82   1e-14
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype...    82   1e-14
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3....    82   1e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae...    80   4e-14
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol...    79   8e-14
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte...    78   2e-13
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI...    78   2e-13
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D...    75   1e-12
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ...    75   2e-12
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter...    74   4e-12
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;...    74   4e-12
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O...    74   4e-12
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl...    73   5e-12
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec...    72   1e-11
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ...    72   2e-11
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu...    71   3e-11
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri...    70   6e-11
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym...    70   6e-11
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti...    68   3e-10
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha...    67   4e-10
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver...    64   4e-09
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium...    62   1e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My...    59   9e-08
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te...    59   1e-07
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En...    53   6e-06
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela...    48   2e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach...    44   0.004
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox...    43   0.008
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C...    39   0.10 
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu...    38   0.24 
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ...    36   0.72 
UniRef50_A7D123 Cluster: Cytochrome-c oxidase; n=1; Halorubrum l...    33   6.7  
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di...    33   8.8  
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ...    33   8.8  
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ...    33   8.8  

>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
           Panarthropoda|Rep: Cytochrome c oxidase subunit I -
           Pagyris cymothoe
          Length = 487

 Score =  262 bits (643), Expect = 4e-69
 Identities = 137/216 (63%), Positives = 146/216 (67%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           +L LLIR ELG PGSLIGDDQIYNTIVTAHA                 N L+PL+LGAPD
Sbjct: 5   SLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPD 64

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NN+ F              IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLH
Sbjct: 65  MAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLH 124

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAGISS                   SFDQ+PLF+ AVGITA          AGAIT+LLT
Sbjct: 125 LAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLT 184

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 649
           DRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 185 DRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220


>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
           cynthia ricini (Indian eri silkmoth)
          Length = 510

 Score =  257 bits (629), Expect = 2e-67
 Identities = 135/212 (63%), Positives = 144/212 (67%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           +L LLIRAELG PGSLIGDDQIYNTIVTAHA                 N LVPL+LGAPD
Sbjct: 29  SLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPD 88

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NN+ F              IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLH
Sbjct: 89  MAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLH 148

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAGISS                   SFDQ+PLFV AVGITAF         AGAIT+LLT
Sbjct: 149 LAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLT 208

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 637
           DRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 209 DRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240


>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
           rubiginosus
          Length = 504

 Score =  241 bits (590), Expect = 1e-62
 Identities = 133/234 (56%), Positives = 148/234 (63%), Gaps = 3/234 (1%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           AL LLIRAELG PG+L+GDDQIYN IVTAHA                 N LVPL++GAPD
Sbjct: 33  ALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPD 92

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NN+ F               VE GAGTG TVYPPL+ N+AH G SVDLAIFSLH
Sbjct: 93  MAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLH 152

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAGISS                   S  Q PLFV +V ITA          A  IT+LLT
Sbjct: 153 LAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLT 212

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694
           DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG   I +  +YY  +K
Sbjct: 213 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKK 266


>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
           root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 516

 Score =  236 bits (578), Expect = 3e-61
 Identities = 129/234 (55%), Positives = 145/234 (61%), Gaps = 3/234 (1%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           AL LLIRAEL  PG+L+GDDQIYN IVTAHA                 N LVPL++GAPD
Sbjct: 32  ALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPD 91

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NN+ F               VE GAGTG TVYPPL+ N+AH G SVDL IFSLH
Sbjct: 92  MAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLH 151

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAG+SS                   S  Q PLFV AV +TA          A  IT+LLT
Sbjct: 152 LAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLT 211

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694
           DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG   I +  +YY  +K
Sbjct: 212 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKK 265


>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Ophisurus macrorhynchos
          Length = 546

 Score =  234 bits (572), Expect = 2e-60
 Identities = 127/234 (54%), Positives = 145/234 (61%), Gaps = 3/234 (1%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           AL LLIRAEL  PG+L+GDDQIYN IVTAHA                 N LVPL++GAPD
Sbjct: 32  ALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPD 91

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NN+ F               VE GAGTG TVYPPL+ N+AH G SVDL IFSLH
Sbjct: 92  MAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLH 151

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAG+SS                   +  Q PLFV +V +TA          A  IT+LLT
Sbjct: 152 LAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLT 211

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694
           DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG   I +  +YY  +K
Sbjct: 212 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKK 265


>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
           root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
           (Human)
          Length = 513

 Score =  232 bits (567), Expect = 7e-60
 Identities = 126/234 (53%), Positives = 145/234 (61%), Gaps = 3/234 (1%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           AL LLIRAELG PG+L+G+D IYN IVTAHA                 N LVPL++GAPD
Sbjct: 32  ALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPD 91

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NN+ F              +VE GAGTG TVYPPL+ N +H G SVDL IFSLH
Sbjct: 92  MAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLH 151

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAG+SS                   +  Q PLFV +V ITA          A  IT+LLT
Sbjct: 152 LAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLT 211

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694
           DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG   I +  +YY  +K
Sbjct: 212 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKK 265


>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
           melitaearum (Parasitoid wasp)
          Length = 499

 Score =  221 bits (539), Expect = 2e-56
 Identities = 114/219 (52%), Positives = 136/219 (62%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           ++ L+IR ELG PGSLIG+DQIYN+IVT+HA                 N L+PL+LG+PD
Sbjct: 16  SMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPD 75

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           ++FPR+NN+ F               +  G GTG TVYPPLS  + H G SVDL IFSLH
Sbjct: 76  MSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLH 135

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAG SS                   + D++ LF  +V ITA          AGAIT+LLT
Sbjct: 136 LAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLT 195

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           DRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 196 DRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPG 234


>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI8 (EC
           3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
           endonuclease aI8 precursor [Contains: Truncated
           non-functional cytochrome oxidase 1; Intron-encoded
           endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
           fungus)
          Length = 645

 Score =  218 bits (533), Expect = 9e-56
 Identities = 117/221 (52%), Positives = 134/221 (60%), Gaps = 2/221 (0%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           A  +LIR EL  PG   L GD Q+YN I+TAHA                 N LVP+++GA
Sbjct: 30  AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
           PD+AFPR+NNI F               VE GAGTG TVYPPLS   +H G SVDLAIFS
Sbjct: 90  PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFS 149

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LHL+GISS                   +  +LPLFV A+ +TA          AGAIT+L
Sbjct: 150 LHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITML 209

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           LTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PG
Sbjct: 210 LTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPG 250


>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 527

 Score =  215 bits (525), Expect = 9e-55
 Identities = 112/218 (51%), Positives = 134/218 (61%), Gaps = 2/218 (0%)
 Frame = +2

Query: 11  LLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           +LIR EL  PG  I  G+ Q+YN ++TAHA                 N  VP+++GAPD+
Sbjct: 36  VLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDM 95

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
           AFPR+NNI F              +VE G+GTG TVYPPLS   +H G +VDLAIFSLHL
Sbjct: 96  AFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHL 155

Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
           +G+SS                   +  +LPLFV +V +TAF         AGAIT+LLTD
Sbjct: 156 SGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTD 215

Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           RN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 216 RNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 253


>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
           Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
           subunit I - Periclimenes thermohydrophilus
          Length = 217

 Score =  210 bits (514), Expect = 2e-53
 Identities = 117/202 (57%), Positives = 135/202 (66%)
 Frame = -2

Query: 612 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 433
           NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV  T  TN G  S  I
Sbjct: 1   NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59

Query: 432 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 253
             +R             I+E PAKC+EKI  STD P CAI   SGG TVHPVP P STI 
Sbjct: 60  PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119

Query: 252 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 73
           L  + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP            KA AVT+ 
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179

Query: 72  L*I*SSPINDPGFPNSARIKSL 7
           L I S PI  PG PNSARIKSL
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSL 200


>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Chondrus crispus (Carragheen)
          Length = 532

 Score =  210 bits (513), Expect = 2e-53
 Identities = 110/220 (50%), Positives = 135/220 (61%), Gaps = 2/220 (0%)
 Frame = +2

Query: 5   LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
           + +LIR EL  P +  L+G+ QIYN ++TAHA                 N LVP+++G+P
Sbjct: 39  MSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSP 98

Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
           D+AFPR+NNI F              +VE G GTG TVYPPLSS  +H G +VDLAIFSL
Sbjct: 99  DMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSL 158

Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
           H++G SS                   S  ++PLFV ++ +TAF         AGAIT+LL
Sbjct: 159 HISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLL 218

Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           TDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 219 TDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPG 258


>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Homalopoma maculosa
          Length = 219

 Score =  209 bits (510), Expect = 6e-53
 Identities = 111/204 (54%), Positives = 124/204 (60%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           AL LLIR ELG PGS IG+DQ+YN +VTAHA                 N LVPL+LGAPD
Sbjct: 15  ALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPD 74

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NN+ F               VE+GAGTG TVYPPLS N AH G SVDLAIFSLH
Sbjct: 75  MAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLH 134

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAG+SS                     + + LFV +V ITA          AGAIT+LLT
Sbjct: 135 LAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLT 194

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF 613
           DRN NTSFFDPAGGGDPILYQHLF
Sbjct: 195 DRNFNTSFFDPAGGGDPILYQHLF 218


>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Placozoan sp. BZ2423
          Length = 498

 Score =  204 bits (497), Expect = 2e-51
 Identities = 107/208 (51%), Positives = 126/208 (60%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           A  +LIR EL +PGS++GDD +YN IVTAHA                 N  VPL++GAPD
Sbjct: 33  AFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPD 92

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NNI F              +VE GAGTG TVYPPL+S  AH G SVD+AIFSLH
Sbjct: 93  MAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLH 152

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAG+SS                   +  ++PLFV +V ITA          AGAIT+LLT
Sbjct: 153 LAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLT 212

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFG 625
           DR  NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 213 DRYFNTTFFDPAGGGDPILYQHLFWFFG 240


>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
           precursor (DNA endonuclease I-SceIV) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
           endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
           endonuclease I-SceIV) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
           SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
          Length = 630

 Score =  199 bits (485), Expect = 6e-50
 Identities = 108/221 (48%), Positives = 130/221 (58%), Gaps = 2/221 (0%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           A+ L+IR EL  PGS  L G+ Q++N +V  HA                 N L+PL++GA
Sbjct: 31  AMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGA 90

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
            D AFPRINNI F              +VE+GAGTG TVYPPLSS  AH G SVDLAIF+
Sbjct: 91  TDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFA 150

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LHL  ISS                   +  +LPLFV ++ ITAF         +  IT+L
Sbjct: 151 LHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITML 210

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           L DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PG
Sbjct: 211 LLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPG 251


>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
           polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
           Cytochrome oxidase subunits 1 and 2 polyprotein -
           Phaeosphaeria nodorum SN15
          Length = 789

 Score =  198 bits (482), Expect = 1e-49
 Identities = 108/220 (49%), Positives = 126/220 (57%), Gaps = 1/220 (0%)
 Frame = +2

Query: 2   ALRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
           A  +LIR EL  PG   I D+Q+YN+I+TAHA                 N L+PL LG P
Sbjct: 32  AFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGP 91

Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
           D+ FPR+NNI +               +ENG GTG T+YPPLS   +H G SVDLAIF L
Sbjct: 92  DMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGL 151

Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
           HL+GISS                      +L LF  AV ITA          AG IT++L
Sbjct: 152 HLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVL 211

Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           TDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PG
Sbjct: 212 TDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPG 251


>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
           group|Rep: Endonuclease - Saccharomyces servazzii
           (Yeast)
          Length = 675

 Score =  196 bits (478), Expect = 4e-49
 Identities = 106/221 (47%), Positives = 129/221 (58%), Gaps = 2/221 (0%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           A+ ++IR EL  PGS  L G+ Q++N +V  HA                 N ++PL++GA
Sbjct: 31  AMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGA 90

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
            D++FPRIN+I F              +VE+GAGTG TVYPPLSS  AH G SVDLAIFS
Sbjct: 91  TDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFS 150

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LHL  ISS                   S  ++PLFV A+ ITAF         +  IT+L
Sbjct: 151 LHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITML 210

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           L DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PG
Sbjct: 211 LMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPG 251


>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Paracoccidioides brasiliensis
          Length = 710

 Score =  191 bits (466), Expect = 1e-47
 Identities = 102/220 (46%), Positives = 125/220 (56%), Gaps = 1/220 (0%)
 Frame = +2

Query: 2   ALRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
           A  +LIR EL  PG   I D+Q+YN+I+T+H                  N L+P+++G P
Sbjct: 58  AFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGP 117

Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
           D+AFPR+NN+ +              I+ENG GTG T+YPPLS   +H    VDL IF L
Sbjct: 118 DMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGL 177

Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
           HL+GISS                      +L LF  AV ITA          A AIT+LL
Sbjct: 178 HLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLL 237

Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           TDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+PG
Sbjct: 238 TDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPG 277


>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI5 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI5 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 536

 Score =  189 bits (461), Expect = 5e-47
 Identities = 104/206 (50%), Positives = 120/206 (58%), Gaps = 2/206 (0%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           A  +LIR EL  PG   L GD Q+YN I+TAHA                 N LVP+++GA
Sbjct: 30  AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
           PD+AFPR+NNI F               VE GAGTG TVYPPLS   +H G SVDLAIFS
Sbjct: 90  PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFS 149

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LHL+GISS                   +  +LPLFV A+ +TA          AGAIT+L
Sbjct: 150 LHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITML 209

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF 613
           LTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 210 LTDRNFNTSFYDPAGGGDPILYQHLF 235


>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
           Naegleria gruberi
          Length = 633

 Score =  186 bits (453), Expect = 5e-46
 Identities = 101/220 (45%), Positives = 117/220 (53%), Gaps = 2/220 (0%)
 Frame = +2

Query: 5   LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
           L +L+R EL  PG   L G+   YN I T H                  N  VP+++GAP
Sbjct: 35  LSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAP 94

Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
           D++FPR+NN  F                E G GTG TVYPPLSS  +H G SVDL IFS 
Sbjct: 95  DMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSF 154

Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
           HL GI S                       LPLFV +V +T+F         A AIT+LL
Sbjct: 155 HLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLL 214

Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
            DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPG
Sbjct: 215 FDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPG 254


>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
           precursor (DNA endonuclease I- SceII) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
           endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI4 precursor (DNA
           endonuclease I- SceII) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 556

 Score =  178 bits (434), Expect = 9e-44
 Identities = 102/229 (44%), Positives = 128/229 (55%), Gaps = 2/229 (0%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           A+ L+IR EL  PGS  L G+ Q++N +V  HA                 N L+PL++GA
Sbjct: 31  AMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGA 90

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
            D AFPRINNI F              +VE+GAGTG TVYPPLSS  AH G SVDLAIF+
Sbjct: 91  TDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFA 150

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LHL  ISS                   +  +LPLFV ++ ITAF         +  IT+L
Sbjct: 151 LHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITML 210

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWYNFSYY 682
           L DRN NTSFF+ +GGGDPILY+HLF FFG     I++L  + YN  ++
Sbjct: 211 LLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML--MMYNDMHF 257


>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
           stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
          Length = 763

 Score =  177 bits (430), Expect = 3e-43
 Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
 Frame = +2

Query: 2   ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           +L +L+R EL   NP  L+ + Q++N ++TAHA                 N LVPL +G+
Sbjct: 48  SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
            D AFPRINN+ F              +++ G G+G T+YPPL+S  +H G S+D+AIF+
Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LHL+G+SS                    + +LPLFV +V ITA          A  +T+L
Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           L DRN NTSFF  +GGGDP+LY+H+F FFGHPEVYILI+P
Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVP 267


>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
           stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
          Length = 676

 Score =  177 bits (430), Expect = 3e-43
 Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
 Frame = +2

Query: 2   ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           +L +L+R EL   NP  L+ + Q++N ++TAHA                 N LVPL +G+
Sbjct: 48  SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
            D AFPRINN+ F              +++ G G+G T+YPPL+S  +H G S+D+AIF+
Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LHL+G+SS                    + +LPLFV +V ITA          A  +T+L
Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           L DRN NTSFF  +GGGDP+LY+H+F FFGHPEVYILI+P
Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVP 267


>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
           cellular organisms|Rep: Cytochrome c oxidase subunit I -
           Pandaka lidwilli
          Length = 507

 Score =  176 bits (429), Expect = 4e-43
 Identities = 98/191 (51%), Positives = 111/191 (58%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           AL LLIRAEL  PG+L+GDDQIYN IVTAHA                 N L+PL++GAPD
Sbjct: 21  ALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPD 80

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NN+ F               +E GAGTG TVYPPL+ N+AH G SVDL IFSLH
Sbjct: 81  MAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLH 140

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           LAGISS                   S  Q PLFV AV ITA          A  IT+LLT
Sbjct: 141 LAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLT 200

Query: 542 DRNLNTSFFDP 574
           DRNLNT+FFDP
Sbjct: 201 DRNLNTTFFDP 211


>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Trichoderma reesei (Hypocrea jecorina)
          Length = 635

 Score =  173 bits (422), Expect = 3e-42
 Identities = 100/224 (44%), Positives = 124/224 (55%), Gaps = 5/224 (2%)
 Frame = +2

Query: 2   ALRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
           A  +LIR EL  PG   I ++Q+YN+I+TAHA                 N L+PL++G P
Sbjct: 60  AFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGP 119

Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLA 346
           D+AFPR+NNI F              I+E G GTG T+    YPPLS   +H G SVDLA
Sbjct: 120 DMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLA 179

Query: 347 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 526
           IF+LHL+G+SS                      +L LF  A   +              I
Sbjct: 180 IFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWATWSSRSRYFL-------GI 232

Query: 527 TILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           T++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PG
Sbjct: 233 TMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPG 276


>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
           n=1; Saccharomyces castellii|Rep: I-SceII DNA
           endonuclease-like protein - Saccharomyces castellii
           (Yeast)
          Length = 598

 Score =  170 bits (413), Expect = 3e-41
 Identities = 94/210 (44%), Positives = 118/210 (56%), Gaps = 2/210 (0%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           A+ L+IR EL  PG   L G++Q++N +V  HA                 N ++PL++GA
Sbjct: 31  AMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGA 90

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
            D AFPRINNI F              +VE+GAGTG TVYPPL+S  AH G SVDLAIF+
Sbjct: 91  TDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFA 150

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LH+  ISS                   +  +LPLFV A+ ITA          +  +T+L
Sbjct: 151 LHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTML 210

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFG 625
           L DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 211 LLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240


>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
           organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
           (strain CCS1)
          Length = 628

 Score =  169 bits (410), Expect = 7e-41
 Identities = 86/214 (40%), Positives = 119/214 (55%), Gaps = 2/214 (0%)
 Frame = +2

Query: 20  RAELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 193
           +A LG    L G  D  ++N ++T H                  N  +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201

Query: 194 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 373
           R+NN+ +              +++ GAG G T YPP+S+      R+VD AIF++H++G 
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261

Query: 374 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 553
           SS                   +  ++PLF  +V +TA+         AGAIT+LLTDRN 
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321

Query: 554 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
            T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP
Sbjct: 322 GTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILP 355


>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
           Alphaproteobacteria|Rep: Cytochrome-c oxidase -
           Sphingomonas sp. SKA58
          Length = 556

 Score =  164 bits (398), Expect = 2e-39
 Identities = 90/202 (44%), Positives = 113/202 (55%), Gaps = 4/202 (1%)
 Frame = +2

Query: 65  IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 244
           ++N ++TAH                  N  VP+++GAPD+AFPR+NNI F          
Sbjct: 93  LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152

Query: 245 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 412
                V     NGAGTG TVY PLS++    G +VD+AI SLH+AG SS           
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211

Query: 413 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 592
                   +  ++PLFV +V +TAF         A AIT+LLTDRN  T+F+D AGGGDP
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDP 271

Query: 593 ILYQHLF*FFGHPEVYILILPG 658
            LYQHLF FFGHPEVYI+ILPG
Sbjct: 272 ELYQHLFWFFGHPEVYIMILPG 293


>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
           group|Rep: COX1-i5 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 608

 Score =  160 bits (389), Expect = 3e-38
 Identities = 92/218 (42%), Positives = 117/218 (53%), Gaps = 2/218 (0%)
 Frame = +2

Query: 5   LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
           L  +IR EL N GS  L G+ Q +N ++TAHA                 N L+PL+LGA 
Sbjct: 37  LSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGAS 96

Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
           D+AF R+NNI F              +VE GAGTG TVY PL+   +H G +VDLAIFSL
Sbjct: 97  DMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSL 156

Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
           HL+G SS                    ++ +PLF  AV  TA          A  +T+ +
Sbjct: 157 HLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGI 216

Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 652
            DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 217 FDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254


>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
           Naupactini|Rep: Cytochrome c oxidase subunit I -
           Galapaganus collaris
          Length = 406

 Score =  159 bits (385), Expect = 8e-38
 Identities = 87/156 (55%), Positives = 96/156 (61%)
 Frame = +2

Query: 161 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 340
           L LGAPD  FPR  N+ F               VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4   LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63

Query: 341 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 520
           LAIFSLH+AG+ S                   +  ++PLFV AV ITA          AG
Sbjct: 64  LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123

Query: 521 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 628
           AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159


>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
           Cox-i3 protein - Candida stellata (Yeast)
          Length = 588

 Score =  158 bits (384), Expect = 1e-37
 Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 4/221 (1%)
 Frame = +2

Query: 2   ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           +L +L+R EL   NP  L+ + Q++N ++TAHA                 N LVPL +G+
Sbjct: 48  SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
            D AFPRINN+ F              +++ G G+G T+YPPL+S  +H G S+D+AIF+
Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LHL+G+SS                    + +LPLFV +V ITA          A  +T+L
Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 652
           L DRN NTSFF  +GGGDP+LY+H+F FFG   P + I+I+
Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268


>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
           Cox-i2 protein - Candida stellata (Yeast)
          Length = 586

 Score =  151 bits (366), Expect = 2e-35
 Identities = 88/229 (38%), Positives = 124/229 (54%), Gaps = 2/229 (0%)
 Frame = +2

Query: 2   ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           +L +L+R EL   NP  L+ + Q++N ++TAHA                 N LVPL +G+
Sbjct: 48  SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
            D AFPRINN+ F              +++ G G+G T+YPPL+S  +H G S+D+AIF+
Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           LHL+G+SS                    + +LPLFV +V ITA          A  +T+L
Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWYNFSYY 682
           L DRN NTSFF  +GGGDP+LY+H+  F+ +P   +LIL  IW     Y
Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP---VLIL--IWLTSGIY 269


>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
           Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
           Leishmania tarentolae (Sauroleishmania tarentolae)
          Length = 549

 Score =  149 bits (362), Expect = 5e-35
 Identities = 82/217 (37%), Positives = 106/217 (48%), Gaps = 2/217 (0%)
 Frame = +2

Query: 11  LLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           L IR EL     G L GD Q YN ++T+H                  N  +P++ G PD+
Sbjct: 36  LFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDM 95

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
            FPR+NN+ F              + E G G G T+YP L     H   + D  +F++HL
Sbjct: 96  VFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHL 155

Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
            GISS                   SF    LF+ A  ITA          AG +T++L D
Sbjct: 156 LGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCD 215

Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           RN NTSF+D  GGGD IL+QH+F FFGHPEVYI++LP
Sbjct: 216 RNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLP 252


>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
           Nematoda|Rep: Cytochrome c oxidase subunit I -
           Onchocerca volvulus
          Length = 548

 Score =  149 bits (361), Expect = 6e-35
 Identities = 81/219 (36%), Positives = 109/219 (49%), Gaps = 2/219 (0%)
 Frame = +2

Query: 5   LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
           L +LIR EL +PG     G  Q+YN+++T H                  N ++PL+LGAP
Sbjct: 42  LSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAP 101

Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
           ++AFPR+N + F               +  G G+  T YPPLS        S+D  I  L
Sbjct: 102 EMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGL 160

Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
           H  GI S                   + DQ+ +FV    +T+F         AG++  LL
Sbjct: 161 HTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLL 220

Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
            DRN NTSF+D   GG+P+LYQHLF FFGHPEVY++ILP
Sbjct: 221 LDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILP 259


>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
           unguis
          Length = 573

 Score =  139 bits (337), Expect = 5e-32
 Identities = 77/214 (35%), Positives = 109/214 (50%), Gaps = 1/214 (0%)
 Frame = +2

Query: 17  IRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 196
           +R EL +PG  +    +Y++I+T HA                 N  +PL++   D++ PR
Sbjct: 39  MRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPR 98

Query: 197 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 376
           +NN+                +   G G G T+YPPLS++    G  +DLA+FSLH+AG+S
Sbjct: 99  LNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMS 158

Query: 377 SXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 553
           S                    F  L P+ +  +  T+          A  +T+LL DR+ 
Sbjct: 159 SIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHF 218

Query: 554 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP
Sbjct: 219 STSFYYPEGGGDPILWQHLFWFFGHPEVYILILP 252


>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI4 (EC
           3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
           intron-encoded endonuclease aI4 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 530

 Score =  127 bits (307), Expect = 2e-28
 Identities = 76/175 (43%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           A  +LIR EL  PG   L GD Q+YN I+TAHA                 N LVP+++GA
Sbjct: 30  AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
           PD+AFPR+NNI F               VE GAGTG TVYPPLS   +H G SVDLAIFS
Sbjct: 90  PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFS 149

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 520
           LHL+GISS                   +  +LPLFV A+ +TA          AG
Sbjct: 150 LHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204


>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
           Alveolata|Rep: Cytochrome c oxidase subunit 1 -
           Plasmodium falciparum
          Length = 476

 Score =  123 bits (296), Expect = 5e-27
 Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 4/221 (1%)
 Frame = +2

Query: 5   LRLLIRAELGNPG-SLIGDDQI--YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           L +++R EL +    +I  + +  YN I T H                  N  +P++ G+
Sbjct: 35  LSVILRTELYSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGS 94

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIF 352
           P++A+PRIN+I                  E G GTG T+YPPLS+++      +VD+ IF
Sbjct: 95  PELAYPRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIF 154

Query: 353 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 532
            L ++G++S                   +   L +   ++ IT+           G + +
Sbjct: 155 GLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLM 214

Query: 533 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           LL+D + NT FFDP   GDPILYQHLF FFGHPEVYILILP
Sbjct: 215 LLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILP 255


>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
           Theileria|Rep: Cytochrome c oxidase subunit 1 -
           Theileria parva
          Length = 481

 Score =  122 bits (295), Expect = 6e-27
 Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 3/221 (1%)
 Frame = +2

Query: 5   LRLLIRAELGNPG-SLIGDD--QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           + +LIR EL   G  +I  D  +IYN + T H                  N L P++LG 
Sbjct: 38  MSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGY 97

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
            D+ +PR+N                   +E G+GTG T+YPPLS+++++ G  +D  IF 
Sbjct: 98  CDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFG 155

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           L  AGI+S                     D++     ++ +T+F              ++
Sbjct: 156 LLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMV 215

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
             DR+ NT FF+ +  GDP+LYQHLF FFGHPEVYI+ILPG
Sbjct: 216 FLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILPG 256


>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Schistosoma mansoni (Blood fluke)
          Length = 609

 Score =  122 bits (294), Expect = 8e-27
 Identities = 80/218 (36%), Positives = 101/218 (46%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           L LLIR  L +P   +    +YN +VT H                  N  +P+ L   D+
Sbjct: 131 LSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDL 190

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
             PR+N++                    G G G T+YPPLS      G  VD  +FSLHL
Sbjct: 191 LLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHL 247

Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
           AG+SS                   S     + V A   T+          A  IT+LL D
Sbjct: 248 AGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSLPVLASGITMLLFD 302

Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           RN  T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPG
Sbjct: 303 RNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPG 340


>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
           Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
           Dicyema misakiense
          Length = 473

 Score =  117 bits (282), Expect = 2e-25
 Identities = 76/215 (35%), Positives = 102/215 (47%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           LL R +L  P  L  D  +YN  VT H                  N L+P     PD+ F
Sbjct: 32  LLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLF 89

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           PR+N + F              ++ + A  G T YPPLSS       SV+ ++FSLHLAG
Sbjct: 90  PRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAG 140

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
           I+S                    +  L LF  ++ + +          A  IT++LTD++
Sbjct: 141 IASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKH 198

Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           L T F+D   GGDP+LYQHLF FFGHPEVY++ILP
Sbjct: 199 LGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILP 233


>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
           Cystobacterineae|Rep: Cytochrome-c oxidase -
           Anaeromyxobacter sp. Fw109-5
          Length = 596

 Score =  111 bits (267), Expect = 2e-23
 Identities = 72/217 (33%), Positives = 96/217 (44%), Gaps = 8/217 (3%)
 Frame = +2

Query: 68  YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 247
           Y  I T H                  N L+PL++GA D+AFPR+N   F           
Sbjct: 86  YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145

Query: 248 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 424
                  G AG G T Y PLS+N+   G    L + ++ + G+SS               
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205

Query: 425 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGD 589
               ++ +LPL +  + +TA            A  +LL DR+  T FF        GGGD
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265

Query: 590 PILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
           PIL+QHLF  FGHPEVYI+ILP  GI  +   +F RK
Sbjct: 266 PILWQHLFWIFGHPEVYIMILPAWGILGDVLSFFARK 302


>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
           gracilis|Rep: Cytochrome oxidase subunit I - Euglena
           gracilis
          Length = 495

 Score =  111 bits (267), Expect = 2e-23
 Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 6/223 (2%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLI----GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 172
           + +LIR EL   G  I     +  IYN  +T H                  N L+P+++G
Sbjct: 39  ISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIG 98

Query: 173 APDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAHR-GRSVDLA 346
             +++ PR+N I F              ++      +G T+YPPLS+  A   G ++DL+
Sbjct: 99  TSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLS 158

Query: 347 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 526
           +  +H+ GISS                   +F  + ++  ++ +T+            AI
Sbjct: 159 LLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAI 218

Query: 527 TILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           T LL DRN+N++ +D  G  DP+LYQHLF FFGHPEVY++ILP
Sbjct: 219 TGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILP 259


>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
           subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
           terminal oxidase, subunit I - Haloquadratum walsbyi
           (strain DSM 16790)
          Length = 634

 Score =  110 bits (264), Expect = 4e-23
 Identities = 80/223 (35%), Positives = 107/223 (47%), Gaps = 8/223 (3%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           +L+R EL +PG  +  +  YN+++T+H                  N L+PL++GA D+AF
Sbjct: 117 VLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAF 175

Query: 191 PRINNIRFXXXXXXXXXXXXXX--IVEN-GAGTG*TVYPPLS-----SNIAHRGRSVDLA 346
           PRIN I F                I E   A TG T+Y PLS      N A+ G  VDL 
Sbjct: 176 PRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLM 233

Query: 347 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 526
           +  LHL+G+S+                   S+  L +F   +   +            AI
Sbjct: 234 LLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAI 293

Query: 527 TILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
            +LL DRN  TSFF  AG G  IL+QHLF FFGHPEVYI++LP
Sbjct: 294 MMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLP 334


>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
           Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
           subunit I - Myxococcus xanthus (strain DK 1622)
          Length = 556

 Score =  109 bits (262), Expect = 6e-23
 Identities = 72/216 (33%), Positives = 97/216 (44%), Gaps = 1/216 (0%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           LLIR EL  PG  I D   YN   T H                  N ++PL+LGA D+AF
Sbjct: 65  LLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAF 124

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           PR+N +                ++  G  TG T Y P S   AH   +V   +F   + G
Sbjct: 125 PRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIG 180

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
            SS                   ++ ++PLFV A+  T+           G + +L+T  N
Sbjct: 181 FSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATS-CIQVLATPVIGLLLVLVTVEN 239

Query: 551 L-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           L     FDPA GGDP+L+QHLF F+ HP VYI++LP
Sbjct: 240 LFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLP 275


>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
           Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
           maris DSM 8797
          Length = 754

 Score =  109 bits (262), Expect = 6e-23
 Identities = 69/216 (31%), Positives = 95/216 (43%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           LL+R +L  P +     +++N + T H                  N  VPL++GA D+AF
Sbjct: 55  LLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIGARDVAF 113

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           PR+N+  F              +  +    G   Y PLSS      + VD  I  L + G
Sbjct: 114 PRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWIIGLLIMG 173

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
           I S                   S  ++PLFV  + + A            A+ +LL DR 
Sbjct: 174 IGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAMLLIDRW 233

Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           L ++FFDP  GG  +L+QH F  FGHPEVYILILPG
Sbjct: 234 LGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPG 269


>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
           cellular organisms|Rep: Cytochrome C oxidase subunit I -
           Rhizobium loti (Mesorhizobium loti)
          Length = 623

 Score =  109 bits (261), Expect = 8e-23
 Identities = 72/220 (32%), Positives = 99/220 (45%), Gaps = 1/220 (0%)
 Frame = +2

Query: 5   LRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           L LL+R +L  P +  IG D+ YN I T H                    LVPL++G   
Sbjct: 50  LALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVGTRH 107

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           IAFPR+N   +               V+ G   G   Y PLS      G+  D+    + 
Sbjct: 108 IAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMIT 167

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
              +S+                   S D++PLFV ++ +T+F           A T L+ 
Sbjct: 168 FTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLIL 227

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
           DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP +
Sbjct: 228 DRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAV 267


>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
           Bacteria|Rep: Cytochrome c oxidase subunit I -
           Synechococcus sp. (strain CC9311)
          Length = 564

 Score =  109 bits (261), Expect = 8e-23
 Identities = 71/235 (30%), Positives = 103/235 (43%), Gaps = 5/235 (2%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           L +++R EL  P + + D  +YN + T H                  N L+P ++GAPD+
Sbjct: 57  LAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDM 115

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFS 355
           AFP++N   F                  G A +G   YPP+S  + + H      L I +
Sbjct: 116 AFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILA 175

Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
           + L+GISS                    F ++P+FV                  G   +L
Sbjct: 176 VALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVML 235

Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
           L D +  TSFF P GGGDP+L+QH F F+ HP VY+L+LP  GI+      + RK
Sbjct: 236 LFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFSELFPVYARK 290


>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 485

 Score =  107 bits (257), Expect = 3e-22
 Identities = 65/206 (31%), Positives = 94/206 (45%)
 Frame = +2

Query: 38  PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 217
           PG  + D + YN ++T H                  N L+PL++GA D+AFPR+N + + 
Sbjct: 2   PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61

Query: 218 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 397
                        I  N   T  T YPP S N  +      L +F +HL G SS      
Sbjct: 62  AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119

Query: 398 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 577
                        +F +  LFV  +              AGA+T+L  D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179

Query: 578 GGGDPILYQHLF*FFGHPEVYILILP 655
            GGDP++YQ++F F+ HP VY+ +LP
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLP 205


>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
           Bacteria|Rep: Cytochrome c oxidase subunit I type -
           Anaeromyxobacter sp. Fw109-5
          Length = 555

 Score =  107 bits (256), Expect = 3e-22
 Identities = 67/217 (30%), Positives = 96/217 (44%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           LLIR EL  PG  I D   YN + T H                  N L+P+++GA D+AF
Sbjct: 58  LLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAF 117

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           P++N + F              +V+ GA TG T Y P S+    +   V L  F L   G
Sbjct: 118 PKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---G 173

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
            SS                    + +LPLFV ++  T+            ++ ++  +  
Sbjct: 174 FSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHA 233

Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
                FDPA GGDP+L+QH F F+ HP VYI++LP +
Sbjct: 234 FGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAM 270


>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
           Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
           RS-1
          Length = 641

 Score =  105 bits (253), Expect = 8e-22
 Identities = 74/230 (32%), Positives = 98/230 (42%), Gaps = 2/230 (0%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           LL+R +LG P +      +YN + T H                  N +VPL++GA D+AF
Sbjct: 54  LLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMIGARDMAF 112

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           PR+N +                 V      G   Y PL+         VD  I  + L G
Sbjct: 113 PRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWIVGIGLTG 172

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
           ++S                   + +++PLFV    + AF           A   LL DR+
Sbjct: 173 VASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRH 232

Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
             T FF P  GGD +L+QHLF FFGHPEVYILILP  GI       F+RK
Sbjct: 233 FGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIISEVLPTFSRK 282


>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
           n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
           Synechocystis sp. (strain PCC 6803)
          Length = 551

 Score =  105 bits (252), Expect = 1e-21
 Identities = 70/213 (32%), Positives = 92/213 (43%)
 Frame = +2

Query: 17  IRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 196
           +R EL  P       ++YN ++T H                  N L+PL++G  D+AFPR
Sbjct: 52  MRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPR 110

Query: 197 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 376
           +N + F               V      G T YPPLS      G   +L I SL L G S
Sbjct: 111 LNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTS 167

Query: 377 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 556
           S                       +PLF  A+  T+          A A+ +L  D    
Sbjct: 168 SILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAG 227

Query: 557 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           TSFF+P GGGDP++YQHLF F+ HP VYI+ILP
Sbjct: 228 TSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILP 260


>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
           Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
           - Halobacterium salinarium (Halobacterium halobium)
          Length = 593

 Score =  104 bits (250), Expect = 2e-21
 Identities = 68/217 (31%), Positives = 98/217 (45%), Gaps = 2/217 (0%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           LL+R EL      +    +YN ++T+H                  N  +PL++ A D+AF
Sbjct: 91  LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
           PRIN I F              ++     A T  T+Y PLS  ++    +VD+ +  LHL
Sbjct: 150 PRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHL 207

Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
            G+S+                    +  L +F   +   +            A+ +LL D
Sbjct: 208 TGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLD 267

Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           RN  T+FF  AGG DPI +QHLF FFGHPEVY+L+LP
Sbjct: 268 RNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLP 303


>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
           Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
           1 - Corynebacterium glutamicum (Brevibacterium flavum)
          Length = 584

 Score =  103 bits (246), Expect = 6e-21
 Identities = 73/233 (31%), Positives = 100/233 (42%), Gaps = 3/233 (1%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           + LLIRAEL  PG     ++ +N + T H                  N ++PL +GAPD+
Sbjct: 59  MALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIGAPDV 117

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           AFPR+N   F              +   GA   G T+Y PLS  I   G   D+ I  + 
Sbjct: 118 AFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWIVGVG 177

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
             GI S                   +  ++P+F   + + +            A   +L 
Sbjct: 178 ATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAALGVLY 237

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
           DR L    +DPA GG  +L+QHLF FFGHPEVY+L LP  GI       F+RK
Sbjct: 238 DRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVSEIIPVFSRK 289


>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
           borealis
          Length = 513

 Score =  101 bits (241), Expect = 2e-20
 Identities = 55/102 (53%), Positives = 63/102 (61%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           AL LLIRAELG PG+L+GDDQ  N IVTAHA                 N LVPL++GAPD
Sbjct: 33  ALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPD 92

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 307
           +AFPR+NN+ F               VE GAGTG TVYPPL+
Sbjct: 93  MAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134


>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
           Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
           - Aeropyrum pernix
          Length = 815

 Score = 99.5 bits (237), Expect = 7e-20
 Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 2/222 (0%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           +L LL R +L  P S       Y   VT H                  N +VPL +GA D
Sbjct: 41  SLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQIGARD 99

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
           +AFPR+N + +                E+GA   G T+Y PL++ I   G  +DLA  ++
Sbjct: 100 LAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLAALAI 159

Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
            L  +S                     + ++P+F  ++  T                +LL
Sbjct: 160 FLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGGALLL 219

Query: 539 TDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
            DRNL T FF +PAGG   +L+ HLF FFGHPEVYIL+ P +
Sbjct: 220 LDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPAL 259


>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
           oxidase, subunit 1; n=2; Thermoprotei|Rep:
           Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
           Cenarchaeum symbiosum
          Length = 508

 Score = 98.7 bits (235), Expect = 1e-19
 Identities = 76/234 (32%), Positives = 104/234 (44%), Gaps = 3/234 (1%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
           AL LLIRAEL  PG+  I D   +N + T H                  N  VP+++   
Sbjct: 40  ALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMVRYK 98

Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
           D+A+P++N I F                 +   T     PP S  I+  G + D+ IF L
Sbjct: 99  DMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWIFGL 152

Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
            + GISS                   S  Q+PL   +   ++          A A+ +LL
Sbjct: 153 KILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALLMLL 212

Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
           TDR   + FF+PA GGDPI Y HLF F  HPEVY+L++P  G+ Y     F+RK
Sbjct: 213 TDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEMVPRFSRK 266


>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
           1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
           thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
           (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579)
          Length = 791

 Score = 97.9 bits (233), Expect = 2e-19
 Identities = 67/231 (29%), Positives = 98/231 (42%), Gaps = 3/231 (1%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           LLIR +L  P +     + YN I+T H                  N +VPL+LGA D+A 
Sbjct: 47  LLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVAL 106

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 367
           PR+N   +                  GA   G T Y P S   A     VD  + ++ L 
Sbjct: 107 PRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLL 163

Query: 368 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 547
           G SS                   S  ++P++V +V   +            A  ++L +R
Sbjct: 164 GFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLER 223

Query: 548 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
            +  S+F+PA GGDP+L+Q  F F+ HP VY+++LP  GI    +  F RK
Sbjct: 224 KIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILAEVASTFARK 274


>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
           Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
           subtilis
          Length = 649

 Score = 97.5 bits (232), Expect = 3e-19
 Identities = 67/231 (29%), Positives = 96/231 (41%), Gaps = 2/231 (0%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           L++RA+L  P +   D   YN I T H                  N +VPL +GA D+AF
Sbjct: 76  LMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAF 134

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           P +NN+ F              ++      G T Y PL+SN    G   +  +  L +AG
Sbjct: 135 PYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAG 194

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
           I +                   +  ++P+F     IT             A+ +L  DR 
Sbjct: 195 IGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRL 254

Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRKR 697
               FF    GG P+L+ +LF  +GHPEVYI+ILP  GI+      F RK+
Sbjct: 255 FGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIISSFARKQ 305


>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
           aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
           polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
           subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
          Length = 622

 Score = 97.5 bits (232), Expect = 3e-19
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 2/231 (0%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           + IR +L  P +     Q YN ++T H                  N +VPL +GA D++F
Sbjct: 47  MFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSF 105

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           P +N + F               +      G T Y  LS  +  +G  +D  +  L ++G
Sbjct: 106 PFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFVLGLQISG 163

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
           + +                   ++ +LPLF     + +             + +++ DR 
Sbjct: 164 LGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRL 223

Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRKR 697
             T+FF+P  GG+ ++++HLF  FGHPEVYILILP  GI+      F RKR
Sbjct: 224 FGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFSEVIPVFARKR 274


>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
           Watasenia scintillans|Rep: Cytochrome c oxidase subunit
           I - Watasenia scintillans (Sparkling enope)
          Length = 217

 Score = 95.9 bits (228), Expect = 8e-19
 Identities = 55/126 (43%), Positives = 67/126 (53%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           +L L+IR ELG PGSL+ DDQ+YN +VTAH                  N LVPL+LGAPD
Sbjct: 16  SLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPD 75

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+NN+ F              +   G      +  PL       G SVDLAIF LH
Sbjct: 76  MAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLH 133

Query: 362 LAGISS 379
           LAG+SS
Sbjct: 134 LAGVSS 139


>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
           cellular organisms|Rep: Cytochrome C oxidase subunit I
           /III - Pyrobaculum aerophilum
          Length = 800

 Score = 94.7 bits (225), Expect = 2e-18
 Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
 Frame = +2

Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 322
           N LVP ++GAPD+ +PRIN + F              +  ++G   G T+YPPLS+    
Sbjct: 86  NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143

Query: 323 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 502
           +   VDL +  + +AG SS                       + LF  +V   +      
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203

Query: 503 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
               A    +LL +R+L   FF     DPA  GDP L+QH+F FFGHPEVYIL+LP +
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAM 261


>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
           Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
           1 - Beggiatoa sp. PS
          Length = 525

 Score = 94.3 bits (224), Expect = 3e-18
 Identities = 66/219 (30%), Positives = 95/219 (43%), Gaps = 2/219 (0%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           + +LIR EL   G  I DD  +YNT +  H                  N  +PL++GA D
Sbjct: 35  MAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKD 94

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           +AFPR+N +                 + +      T YPP S  I H   +     FS+ 
Sbjct: 95  VAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVL 151

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILL 538
           L G +S                    +++L +FV A  + AF          G A+T+L 
Sbjct: 152 LLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLT 210

Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
            D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP
Sbjct: 211 FDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLP 249


>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Blastopirellula marina DSM 3645|Rep: Cytochrome c
           oxidase subunit I - Blastopirellula marina DSM 3645
          Length = 595

 Score = 91.9 bits (218), Expect = 1e-17
 Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 15/215 (6%)
 Frame = +2

Query: 62  QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 241
           + Y  +VT HA                 N L+PL++GA D+AFP +N + +         
Sbjct: 86  EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145

Query: 242 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 409
                  + +GA  G T YPPLS   ++    G +  L +  +   G+SS          
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205

Query: 410 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 574
                    +  +LPL + A+ ITA            A  ++L DR + T FF P     
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265

Query: 575 ------AGGGDPILYQHLF*FFGHPEVYILILPGI 661
                 AGGG P+L+QHLF F+ HP VYI+ILP +
Sbjct: 266 NNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAM 300


>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
           Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
           Roseovarius nubinhibens ISM
          Length = 818

 Score = 91.1 bits (216), Expect = 2e-17
 Identities = 61/217 (28%), Positives = 88/217 (40%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           L +LIRA+L  P S     + YN + T H                    L+P +LG+ D+
Sbjct: 50  LAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDL 108

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
           AFPR+    F              +      +G  +YPPLSS +   G + D  +  +  
Sbjct: 109 AFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITF 168

Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
             IS+                   S  ++P+F     +TA               +L  +
Sbjct: 169 VEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSILLELE 228

Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           R  +  FF  A GGD +L+QHLF  FGHPEVYI+ LP
Sbjct: 229 RAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLP 265


>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
           shibae DFL 12|Rep: Cytochrome-c oxidase -
           Dinoroseobacter shibae DFL 12
          Length = 853

 Score = 90.6 bits (215), Expect = 3e-17
 Identities = 60/215 (27%), Positives = 89/215 (41%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           LL+R +L  P +     + YN + T H                    L+PL++GA D+ F
Sbjct: 78  LLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMIGARDLVF 136

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           PR+    +              + +     G  +Y PLS++    G S D  +  + LA 
Sbjct: 137 PRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWLIGITLAE 196

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
           I+S                   S  ++P+ +  +  TAF              +L  +R 
Sbjct: 197 IASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSILLEAERL 256

Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           L   FFD   GGDP+L+QHLF  FGHPEVYI+ LP
Sbjct: 257 LGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLP 291


>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
           flagellatus KT|Rep: Cytochrome-c oxidase -
           Methylobacillus flagellatus (strain KT / ATCC 51484 /
           DSM 6875)
          Length = 631

 Score = 89.8 bits (213), Expect = 6e-17
 Identities = 61/219 (27%), Positives = 90/219 (41%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           L LL+R +L  P +   D + YN + + H                    ++PL+LG  D+
Sbjct: 57  LALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDM 115

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
            FPR+N   +              ++      G   YPPL+      G  +D     +  
Sbjct: 116 TFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTF 175

Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
             IS+                   S +++P+FV AV + +F           A  +L  D
Sbjct: 176 MEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALD 235

Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
           R     FF  A  GDPIL+QHLF FFGHPEVYI+ +P +
Sbjct: 236 RMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPAL 273


>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
           Aplidium nordmanni
          Length = 227

 Score = 87.8 bits (208), Expect = 2e-16
 Identities = 70/203 (34%), Positives = 82/203 (40%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           L  R  L   G +IG  QI    VTA A                   L PL +GAP +A 
Sbjct: 25  LXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAX 84

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           PR+ N+ F               +  G G    VYPP SS +AH   +VDL IF LHLAG
Sbjct: 85  PRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAG 144

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
           ISS                   ++    LF                  A AIT+L   R 
Sbjct: 145 ISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRX 204

Query: 551 LNTSFFDPAGGGDPILYQHLF*F 619
            N SFF P   G P  +   F F
Sbjct: 205 XNXSFFXPXXXGXPXXFPTFFXF 227


>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
           Proteobacteria|Rep: Quinol oxidase subunit I -
           Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
          Length = 825

 Score = 85.8 bits (203), Expect = 9e-16
 Identities = 58/217 (26%), Positives = 89/217 (41%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           L +LIRA+L +P S     + Y  + T H                    L+P +LG+ D+
Sbjct: 50  LAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDL 108

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
           A+PR++   F              +      +G  +YPPL+S +   G + D  +  +  
Sbjct: 109 AYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITF 168

Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
             IS+                   S D++P++     +TA               +L  +
Sbjct: 169 VEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSILLELE 228

Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           R     FF  A GGD +L+QHLF  FGHPEVYI+ LP
Sbjct: 229 RAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLP 265


>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Alternative cytochrome c oxidase
           polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
           oxidase polypeptide I) (Cytochrome BB3 subunit 1)
           (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
          Length = 591

 Score = 85.0 bits (201), Expect = 2e-15
 Identities = 71/232 (30%), Positives = 96/232 (41%), Gaps = 15/232 (6%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           L  L+R +LG PG+    D   Y   +T H                  N L+PL++GA D
Sbjct: 59  LSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARD 118

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIF 352
           + FP +N + +               V  G  G G T+YPP  + S    +   + L + 
Sbjct: 119 MVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLS 178

Query: 353 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAIT 529
           SL L  I                     +  +LPL V  +   T            G++ 
Sbjct: 179 SLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVM 238

Query: 530 ILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILP 655
           +LL DR L TSFF P           GGG P+L+QHLF FFGHPEVYI+ LP
Sbjct: 239 LLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALP 289


>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
           Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
           cenocepacia MC0-3
          Length = 1004

 Score = 84.2 bits (199), Expect = 3e-15
 Identities = 59/217 (27%), Positives = 90/217 (41%)
 Frame = +2

Query: 11  LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
           L++R +L  P + +     Y+++ T H                  N L PL+LG+ D+AF
Sbjct: 72  LVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLMLGSRDMAF 130

Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
           PR+    +               +      G   Y PL+S     G ++D+    + L G
Sbjct: 131 PRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYGLGMILLG 190

Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
           IS+                   S D+LP+ V      +          + A  +L  DRN
Sbjct: 191 ISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFLLLWLDRN 250

Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
             T FFD A GG P+L+QHLF  F HP VY+++LP +
Sbjct: 251 AGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAM 287


>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
           Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
           Mesorhizobium sp. (strain BNC1)
          Length = 845

 Score = 83.0 bits (196), Expect = 6e-15
 Identities = 61/218 (27%), Positives = 87/218 (39%), Gaps = 1/218 (0%)
 Frame = +2

Query: 5   LRLLIRAELGNP-GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
           L L++R +L  P   L+G D  YN I T H                    L+P +L A D
Sbjct: 60  LGLIMRTQLAVPENDLVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARD 117

Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           + FPR++                    +     G  +YPPL+      G + D  +  + 
Sbjct: 118 LPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIG 177

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
              IS+                   S  ++P+F  A+ I A            A  +L  
Sbjct: 178 FIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATMLLEI 237

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           +R+    FF    GGDP+L+QHLF FFGHPEVYI+ LP
Sbjct: 238 ERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLP 275


>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
           Bacteria|Rep: Cytochrome C oxidase subunit I -
           Symbiobacterium thermophilum
          Length = 628

 Score = 82.2 bits (194), Expect = 1e-14
 Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 4/220 (1%)
 Frame = +2

Query: 14  LIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 193
           ++R +L  PG  +   + +N + T HA                 N  +PL++GA D+AFP
Sbjct: 53  IMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMIGARDVAFP 111

Query: 194 RINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
           R+N   +              ++    G     G   Y  L+S     G   D     L 
Sbjct: 112 RLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGPDFWTLGLL 171

Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
           L GI +                   +  ++P+FV    +T+            A+ +L+ 
Sbjct: 172 LLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVTVALIMLMF 231

Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
           DR    +FF+   GG  + YQHLF  FGHPEVYILILP +
Sbjct: 232 DRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAM 271


>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
           n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
           subunit I - Chromobacterium violaceum
          Length = 680

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 57/186 (30%), Positives = 81/186 (43%), Gaps = 2/186 (1%)
 Frame = +2

Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
           N +VPL +GA D+AFP +N++ F               V N A TG   YPPL+      
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184

Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
              VD  I++L ++GI +                       +P+F               
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244

Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSY 679
               GA+ +L  DR L+  FF    GG+ ++Y +LF  +GHPEVYIL+LP  GI+     
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFSEVVS 304

Query: 680 YFTRKR 697
            F  KR
Sbjct: 305 TFAGKR 310


>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
           polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=20; cellular organisms|Rep: Alternative
           Cytochrome c oxidase polypeptide I (Cytochrome BB3
           subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
           marina ATCC 23134
          Length = 635

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 14/233 (6%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           LR ++   +   G L  + + Y  +VT H                  N L+PL +GA D+
Sbjct: 83  LRPILGGWITEAGKL--EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDM 140

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIF 352
           A   +N + +               +E G  +G   +YPPLS+    ++  G  + + + 
Sbjct: 141 ASGFMNMLSYWFFFGSSVIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLI 200

Query: 353 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 532
           S+ L  IS                    SF +LPL + A  ITA            A  +
Sbjct: 201 SMALFIISVLLGGINYITTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALL 260

Query: 533 LLTDRNLNTSFFDP----AG------GGDPILYQHLF*FFGHPEVYILILPGI 661
           L+ DR+L TSFF      AG      GG P+L+QHLF F GHPEVYI+++P +
Sbjct: 261 LIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPAL 313


>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
           (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
           1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
           Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
           oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
           BO(3) subunit 1) - Pseudomonas putida
          Length = 672

 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 2/186 (1%)
 Frame = +2

Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
           N  VPL +GA D+AFP +N++ F               V   A TG   YPPL+      
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183

Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
           G  VD  I++L L+G+ +                       +P+F               
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243

Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSY 679
                A+ +L  DR L+   F    GG+P++Y +LF  +GHPEVYILILP  G++   + 
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFSEVTS 303

Query: 680 YFTRKR 697
            F  KR
Sbjct: 304 TFAGKR 309


>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
           cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
           cretinus
          Length = 153

 Score = 80.2 bits (189), Expect = 4e-14
 Identities = 39/65 (60%), Positives = 45/65 (69%)
 Frame = +2

Query: 161 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 340
           L+LGAPD+AFPR+NN+ F              +VENGAGTG TVYPPLSS  AH G SVD
Sbjct: 1   LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60

Query: 341 LAIFS 355
           LAI+S
Sbjct: 61  LAIYS 65



 Score = 59.7 bits (138), Expect = 7e-08
 Identities = 29/56 (51%), Positives = 32/56 (57%)
 Frame = +1

Query: 460 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 627
           CM C +Y        TCFS S+Y IIN  K KY IF   W   P  +STFILIFWT
Sbjct: 97  CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152


>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
           Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
           Sulfolobus acidocaldarius
          Length = 788

 Score = 79.4 bits (187), Expect = 8e-14
 Identities = 55/173 (31%), Positives = 77/173 (44%), Gaps = 1/173 (0%)
 Frame = +2

Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 322
           N LVP ++GA D+ +P+IN + F              ++      G  +Y PLS     +
Sbjct: 80  NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138

Query: 323 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 502
            G   +L   +L L+G+SS                    + ++PLFV     TA      
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKVP--YLKMPLFVWGFFTTAILMIIA 196

Query: 503 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
                  +     +R   T FFD A GG P+L+Q LF FFGHPEVYILILP +
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAM 249


>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
           Rhodobacteraceae|Rep: Cytochrome c, monohaem -
           Rhodobacter sphaeroides ATCC 17025
          Length = 878

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 54/217 (24%), Positives = 85/217 (39%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           L +L+R +L  PG+       +N   T H                    L+P +LGA D+
Sbjct: 78  LAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDL 136

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
            FPR++   +              + +    +G  +YPPL++     G   D+ +  L  
Sbjct: 137 PFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSF 194

Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
             ++S                     + +PL+   V +                 +   +
Sbjct: 195 IEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEME 254

Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
           R  +  FFDP  GGDP+L+QHLF  FGHPEVYI+ LP
Sbjct: 255 RGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291


>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI2 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI2 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 533

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 47/107 (43%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           A  +LIR EL  PG   L GD Q+YN I+TAHA                 N LVP+++GA
Sbjct: 30  AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 316
           PD+AFPR+NNI F               VE GAGTG TV   LS  I
Sbjct: 90  PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136


>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
           Deinococcus|Rep: Cytochrome c oxidase, subunit I -
           Deinococcus radiodurans
          Length = 820

 Score = 75.4 bits (177), Expect = 1e-12
 Identities = 54/217 (24%), Positives = 80/217 (36%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           L L IR +L  P   +     YN ++T HA                 N  +PL LG  D+
Sbjct: 53  LALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDV 112

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
           A PR+N                          G T Y PL+ +    G SV +    L+ 
Sbjct: 113 ALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAVILN- 171

Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
            G+ S                      ++P+F  ++  T+            A  +   +
Sbjct: 172 -GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALLTYLE 230

Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
             L  S F+P  GG P+LYQ  F F+ HP VY+++LP
Sbjct: 231 IKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLP 267


>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
           Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
           sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 607

 Score = 74.9 bits (176), Expect = 2e-12
 Identities = 48/168 (28%), Positives = 72/168 (42%)
 Frame = +2

Query: 152 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 331
           L+P +LGA D+ FPR++   F               V      G  + PPL++     G 
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226

Query: 332 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 511
           + D  +  +    IS+                   +  ++P+F  A+ + A         
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286

Query: 512 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
              A  +L  +R  +  FF    GGDP+L+QHLF FFGHPEVYI+ LP
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLP 334


>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
           Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
           eutropha (strain C71)
          Length = 703

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 52/170 (30%), Positives = 71/170 (41%)
 Frame = +2

Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
           N +VPL +GA D+AFP +N+I                +V   +  G   YPP +  + + 
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203

Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
           G  VD  I+SL LA + S                       +PLF      TA       
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263

Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
                    L  DR L+  FF    GG+ + + ++F  FGHPEVYILILP
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILP 313


>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
           n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
           polypeptide I/III - Picrophilus torridus
          Length = 841

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 1/177 (0%)
 Frame = +2

Query: 152 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 328
           L+PL +G+ D+ +PR+N + +               +  G   TG TVY PLSS      
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170

Query: 329 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 508
              D A  ++ L GI +                       LPLFV AV   A        
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230

Query: 509 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWYNFSY 679
              G   +LL    ++ S++    GG  +++++LF +FGHPEVY+L+LPG    F Y
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTGAMFDY 286


>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
           Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
           Tetrahymena pyriformis
          Length = 698

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
 Frame = +2

Query: 281 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 451
           G T   P SSNI + G  S D+ I S+  AGIS+                      +  +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342

Query: 452 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 631
           P    ++ +T             A+ ++  DR+  T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402

Query: 632 EVYILILP 655
           EVY+LI+P
Sbjct: 403 EVYVLIIP 410



 Score = 44.4 bits (100), Expect = 0.003
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           AL  +IR EL +P S    GD   Y  +VTAH                  N L+P  +G+
Sbjct: 80  ALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGS 139

Query: 176 PDIAFPRINNIRF 214
            D+A+PR+N+I F
Sbjct: 140 KDVAYPRLNSIGF 152


>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
           subunit I - Planctomyces maris DSM 8797
          Length = 606

 Score = 73.3 bits (172), Expect = 5e-12
 Identities = 54/212 (25%), Positives = 81/212 (38%), Gaps = 14/212 (6%)
 Frame = +2

Query: 62  QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 241
           + Y  + T HA                 N L+PL++GA D+AFP++N + +         
Sbjct: 90  EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149

Query: 242 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 412
                    G   G T YP    L+      G +    +  +   G SS           
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209

Query: 413 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 580
                   +F +LP+ +  + ITA               + + DR   T FF P+G    
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269

Query: 581 -------GGDPILYQHLF*FFGHPEVYILILP 655
                  GG P+L+QHLF F+ HP VYI++LP
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLP 301


>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
           Echinoida|Rep: Cytochrome c oxidase subunit I -
           Echinometra oblonga
          Length = 386

 Score = 72.1 bits (169), Expect = 1e-11
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +2

Query: 548 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
           N  T+FFDPAGGGD IL+QHLF FFGHPEVYILILPG
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPG 227


>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
           n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
           ubiquinol oxidase subunit I - Carsonella ruddii (strain
           PV)
          Length = 606

 Score = 71.7 bits (168), Expect = 2e-11
 Identities = 47/170 (27%), Positives = 73/170 (42%)
 Frame = +2

Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
           N ++PL +G+ D+AFP +N + F              I+   A TG   YPPLS      
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178

Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
              VD   +S+ ++GI +                    F+++ +F+     +        
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238

Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
                 +  +  DR L+T F+    GG  +LY +L   +GHPEVYILILP
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILP 288


>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
           1 - Munidopsis verrucosus
          Length = 154

 Score = 70.9 bits (166), Expect = 3e-11
 Identities = 39/83 (46%), Positives = 48/83 (57%)
 Frame = +2

Query: 299 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 478
           PL+S+IAH G SVD+AIFSLHLAG+SS                   + D++PLF+ AV I
Sbjct: 72  PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131

Query: 479 TAFXXXXXXXXXAGAITILLTDR 547
           T           AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154



 Score = 35.1 bits (77), Expect = 1.7
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +1

Query: 133 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 258
           W IWKL             P NK YKILT  PL Y    K+N
Sbjct: 28  WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69


>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
           Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
           bacterium (strain Ellin345)
          Length = 595

 Score = 69.7 bits (163), Expect = 6e-11
 Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 16/226 (7%)
 Frame = +2

Query: 32  GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 211
           G PG ++   + Y +++T H                  N  +P+ +GA D+AFPR N + 
Sbjct: 75  GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133

Query: 212 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 376
           F               + +G   +G T Y  LS+    A  G +    ++ + +A   I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193

Query: 377 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 556
           S                   S  ++P+   A  IT+            A  +L  DR   
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253

Query: 557 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGI 661
           TSFF P+G           GG  +L+QHLF FFGHPEVYI ILP +
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAM 299


>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
           polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
           (Liverwort)
          Length = 434

 Score = 69.7 bits (163), Expect = 6e-11
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
 Frame = +2

Query: 11  LLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           +LIR EL  PG+ I  G+ Q+YN ++TAHA                 N  VP+++G+PD+
Sbjct: 37  VLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDM 96

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 292
           AFPR+NNI F              +VE G G+G TV
Sbjct: 97  AFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132


>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
           lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 457

 Score = 67.7 bits (158), Expect = 3e-10
 Identities = 42/106 (39%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
 Frame = +2

Query: 5   LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
           L  +IR EL N GS  L G+ Q +N ++TAHA                 N L+PL+LGA 
Sbjct: 37  LSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGAS 96

Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 316
           D+AF R+NNI F              +VE GAGTG TV    SS +
Sbjct: 97  DMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142


>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
           Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 854

 Score = 66.9 bits (156), Expect = 4e-10
 Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 13/232 (5%)
 Frame = +2

Query: 5   LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
           L LL R EL + G+ +     YN  V+ H                  N LVPL +GA D+
Sbjct: 43  LALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA-NYLVPLQIGADDL 101

Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--IAHRGRSVDLAIFSL 358
           AFPR+N + +                      G T+Y PL++   I   G      + +L
Sbjct: 102 AFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIPGEGLGATSVVLAL 161

Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
            +   +                        +P+F  ++ +T +           A+ IL 
Sbjct: 162 IMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLFAFAALLAALMILA 221

Query: 539 TDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
           +D  L T++F           D    G  +L+ HLF FFGHPEVYI+  P +
Sbjct: 222 SDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIVFFPAL 273


>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
           Kluyveromyces thermotolerans|Rep: Putative DNA
           endonuclease - Kluyveromyces thermotolerans (Yeast)
          Length = 542

 Score = 63.7 bits (148), Expect = 4e-09
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
           A+ ++IR EL  PG+  L G+ Q++N +V  HA                 N L+PL++GA
Sbjct: 31  AMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGA 90

Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 292
            D++F R+NNI F              +VE+GAGTG TV
Sbjct: 91  SDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129


>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
           cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
           cryptum (strain JF-5)
          Length = 689

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 44/174 (25%), Positives = 71/174 (40%)
 Frame = +2

Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
           N +VPL +GA D+AFP +N +                 V + +  G     PL+      
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202

Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
           G  VD  ++++ +  + +                   ++ +LP  V     T        
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262

Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWY 667
                A+ +L  DR L T FF    GG+ +LY +LF  +GHPEVY ++LP   +
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGF 316


>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
           Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
           subunit I - Myrmarachne sp. G FSC-2006
          Length = 129

 Score = 59.3 bits (137), Expect = 9e-08
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +2

Query: 257 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 379
           +VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12  MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52


>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
           Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
           subunit I - Tetragona dorsalis ziegleri
          Length = 111

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 32/75 (42%), Positives = 42/75 (56%)
 Frame = +2

Query: 443 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 622
           DQ+ LF  ++ IT           AG IT+LL+DRN N  FF   GG  PIL+Q++   F
Sbjct: 12  DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71

Query: 623 GHPEVYILILPGIWY 667
           GH +V  LIL   W+
Sbjct: 72  GHTDVLFLIL--FWF 84


>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Endopterygota|Rep: Cytochrome c oxidase subunit I -
           Copitarsia incommoda
          Length = 150

 Score = 53.2 bits (122), Expect = 6e-06
 Identities = 25/36 (69%), Positives = 26/36 (72%)
 Frame = +1

Query: 547 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 654
           K KYIIF S W     F+STFILIFWT  SLYFNFT
Sbjct: 7   KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFT 42


>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
           Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
           - Celatoblatta vulgaris
          Length = 134

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 25/51 (49%), Positives = 29/51 (56%)
 Frame = +1

Query: 463 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 615
           M C +YS      +TC  WSYYN IN SKLKYI+F         F+ST IL
Sbjct: 84  MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134


>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
           Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
           I - Pachymerium ferrugineum
          Length = 219

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 34/123 (27%), Positives = 41/123 (33%)
 Frame = +1

Query: 190 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 369
           P NK +KIL  TPL Y  N    C K C + +NSLP     Y T    R   +F  T   
Sbjct: 79  PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138

Query: 370 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 549
                                         CM   +YS      +     S+YNI    K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198

Query: 550 LKY 558
            KY
Sbjct: 199 PKY 201


>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
           oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
           Sub-unit I of an aa3-type cytochrome oxidase -
           Thiobacillus ferrooxidans (Acidithiobacillus
           ferrooxidans)
          Length = 627

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 2/173 (1%)
 Frame = +2

Query: 152 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 331
           L+PL+LG  ++ FP++  + +                  G  TG   YPPL+ N    G 
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235

Query: 332 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 511
            +   +       ++S                   S  ++P+FV  +   A         
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295

Query: 512 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIW 664
                 + L+D    + F+     G P+ Y   F F  HPEVY+ ILP   IW
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAIW 347


>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
           Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
           Roseiflexus sp. RS-1
          Length = 561

 Score = 39.1 bits (87), Expect = 0.10
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 581 GGDPILYQHLF*FFGHPEVYILILPGI--WYNF 673
           G DP+L + LF F GHP VY  +LP    WYNF
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAYISWYNF 256


>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
           subunit I - Eutetramorium sp. BLF m1
          Length = 201

 Score = 37.9 bits (84), Expect = 0.24
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +2

Query: 2   ALRLLIRAELGNPGSLIGDDQIYNTIVTAHA 94
           ++ +LIR EL   GS++  +QIYNT+VT+HA
Sbjct: 16  SMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46



 Score = 37.1 bits (82), Expect = 0.41
 Identities = 27/78 (34%), Positives = 35/78 (44%)
 Frame = +2

Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
           G    L IFSL +   S                    + D++ L   ++ ITA       
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183

Query: 506 XXXAGAITILLTDRNLNT 559
              AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201


>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
           Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
           buchholtzi (Butterflyfish)
          Length = 184

 Score = 36.3 bits (80), Expect = 0.72
 Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
 Frame = +2

Query: 617 FFGHPEVYILILPG---IWYNFSYYFTRK 694
           FFGHPEVYILILPG   I +  +YY  +K
Sbjct: 2   FFGHPEVYILILPGFGMISHIVAYYSGKK 30


>UniRef50_A7D123 Cluster: Cytochrome-c oxidase; n=1; Halorubrum
           lacusprofundi ATCC 49239|Rep: Cytochrome-c oxidase -
           Halorubrum lacusprofundi ATCC 49239
          Length = 597

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 587 DPILYQHLF*FFGHPEVYILILPG--IWY 667
           +P L + LF FFGHP VY  ++P   +WY
Sbjct: 223 NPTLTRTLFWFFGHPVVYFWLMPAYLLWY 251


>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
           Digenea|Rep: Cytochrome c oxidase subunit I -
           Echinostoma hortense
          Length = 154

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 617 FFGHPEVYILILP 655
           FFGHPEVY+LILP
Sbjct: 1   FFGHPEVYVLILP 13


>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 1420

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 546  RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 424
            +++NN +I      S NNN N++  T  TN  + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078


>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
           n=1; Candida albicans|Rep: Putative uncharacterized
           protein CLN3 - Candida albicans (Yeast)
          Length = 785

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 600 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 463
           Y++ +PP + +KN   K  S NN     IA   T ++NNN N+ +P  H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,999,346
Number of Sequences: 1657284
Number of extensions: 8958023
Number of successful extensions: 20729
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 19074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20444
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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