BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1064 (697 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 262 4e-69 UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 257 2e-67 UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 241 1e-62 UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 236 3e-61 UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 234 2e-60 UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 232 7e-60 UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 221 2e-56 UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 218 9e-56 UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 215 9e-55 UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 210 2e-53 UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 210 2e-53 UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 209 6e-53 UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 204 2e-51 UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 199 6e-50 UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 198 1e-49 UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 196 4e-49 UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 191 1e-47 UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 189 5e-47 UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 186 5e-46 UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 178 9e-44 UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 177 3e-43 UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 177 3e-43 UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 176 4e-43 UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 173 3e-42 UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 170 3e-41 UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 169 7e-41 UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 164 2e-39 UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 160 3e-38 UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 159 8e-38 UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 158 1e-37 UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 151 2e-35 UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 149 5e-35 UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 149 6e-35 UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 139 5e-32 UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 127 2e-28 UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 123 5e-27 UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 122 6e-27 UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 122 8e-27 UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 117 2e-25 UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 111 2e-23 UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 111 2e-23 UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 110 4e-23 UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 109 6e-23 UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 109 6e-23 UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 109 8e-23 UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 109 8e-23 UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 107 3e-22 UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 107 3e-22 UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 105 8e-22 UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 105 1e-21 UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 104 2e-21 UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 103 6e-21 UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 101 2e-20 UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 100 7e-20 UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 99 1e-19 UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 98 2e-19 UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 97 3e-19 UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 97 3e-19 UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 96 8e-19 UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 95 2e-18 UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 94 3e-18 UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 92 1e-17 UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 91 2e-17 UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 91 3e-17 UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 90 6e-17 UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 88 2e-16 UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 86 9e-16 UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 85 2e-15 UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 84 3e-15 UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 83 6e-15 UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 82 1e-14 UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 82 1e-14 UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 82 1e-14 UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 82 1e-14 UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 4e-14 UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 79 8e-14 UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 78 2e-13 UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 78 2e-13 UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 75 1e-12 UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 75 2e-12 UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 74 4e-12 UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 74 4e-12 UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 74 4e-12 UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 73 5e-12 UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 72 1e-11 UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 72 2e-11 UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 3e-11 UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 70 6e-11 UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 70 6e-11 UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 68 3e-10 UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 67 4e-10 UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 64 4e-09 UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 62 1e-08 UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 9e-08 UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 59 1e-07 UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 53 6e-06 UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04 UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 44 0.004 UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 43 0.008 UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 39 0.10 UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 38 0.24 UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 36 0.72 UniRef50_A7D123 Cluster: Cytochrome-c oxidase; n=1; Halorubrum l... 33 6.7 UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 33 8.8 UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 8.8 UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ... 33 8.8 >UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; Panarthropoda|Rep: Cytochrome c oxidase subunit I - Pagyris cymothoe Length = 487 Score = 262 bits (643), Expect = 4e-69 Identities = 137/216 (63%), Positives = 146/216 (67%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 +L LLIR ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD Sbjct: 5 SLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPD 64 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLH Sbjct: 65 MAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLH 124 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAGISS SFDQ+PLF+ AVGITA AGAIT+LLT Sbjct: 125 LAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLT 184 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 649 DRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI Sbjct: 185 DRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220 >UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; Bilateria|Rep: Cytochrome c oxidase subunit I - Samia cynthia ricini (Indian eri silkmoth) Length = 510 Score = 257 bits (629), Expect = 2e-67 Identities = 135/212 (63%), Positives = 144/212 (67%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 +L LLIRAELG PGSLIGDDQIYNTIVTAHA N LVPL+LGAPD Sbjct: 29 SLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPD 88 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLH Sbjct: 89 MAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLH 148 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAGISS SFDQ+PLFV AVGITAF AGAIT+LLT Sbjct: 149 LAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLT 208 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 637 DRNLNTSFFDPAGGGDPILYQHLF FFGHP++ Sbjct: 209 DRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240 >UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus rubiginosus Length = 504 Score = 241 bits (590), Expect = 1e-62 Identities = 133/234 (56%), Positives = 148/234 (63%), Gaps = 3/234 (1%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 AL LLIRAELG PG+L+GDDQIYN IVTAHA N LVPL++GAPD Sbjct: 33 ALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPD 92 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDLAIFSLH Sbjct: 93 MAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLH 152 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAGISS S Q PLFV +V ITA A IT+LLT Sbjct: 153 LAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLT 212 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694 DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG I + +YY +K Sbjct: 213 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKK 266 >UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio (Zebrafish) (Brachydanio rerio) Length = 516 Score = 236 bits (578), Expect = 3e-61 Identities = 129/234 (55%), Positives = 145/234 (61%), Gaps = 3/234 (1%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 AL LLIRAEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD Sbjct: 32 ALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPD 91 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLH Sbjct: 92 MAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLH 151 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAG+SS S Q PLFV AV +TA A IT+LLT Sbjct: 152 LAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLT 211 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694 DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG I + +YY +K Sbjct: 212 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKK 265 >UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; Eukaryota|Rep: Cytochrome c oxidase subunit I - Ophisurus macrorhynchos Length = 546 Score = 234 bits (572), Expect = 2e-60 Identities = 127/234 (54%), Positives = 145/234 (61%), Gaps = 3/234 (1%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 AL LLIRAEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD Sbjct: 32 ALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPD 91 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLH Sbjct: 92 MAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLH 151 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAG+SS + Q PLFV +V +TA A IT+LLT Sbjct: 152 LAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLT 211 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694 DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG I + +YY +K Sbjct: 212 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKK 265 >UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498; root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens (Human) Length = 513 Score = 232 bits (567), Expect = 7e-60 Identities = 126/234 (53%), Positives = 145/234 (61%), Gaps = 3/234 (1%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 AL LLIRAELG PG+L+G+D IYN IVTAHA N LVPL++GAPD Sbjct: 32 ALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPD 91 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NN+ F +VE GAGTG TVYPPL+ N +H G SVDL IFSLH Sbjct: 92 MAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLH 151 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAG+SS + Q PLFV +V ITA A IT+LLT Sbjct: 152 LAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLT 211 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694 DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG I + +YY +K Sbjct: 212 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKK 265 >UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742; Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia melitaearum (Parasitoid wasp) Length = 499 Score = 221 bits (539), Expect = 2e-56 Identities = 114/219 (52%), Positives = 136/219 (62%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 ++ L+IR ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD Sbjct: 16 SMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPD 75 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 ++FPR+NN+ F + G GTG TVYPPLS + H G SVDL IFSLH Sbjct: 76 MSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLH 135 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAG SS + D++ LF +V ITA AGAIT+LLT Sbjct: 136 LAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLT 195 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 DRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPG Sbjct: 196 DRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPG 234 >UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI8 (EC 3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded endonuclease aI8 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut fungus) Length = 645 Score = 218 bits (533), Expect = 9e-56 Identities = 117/221 (52%), Positives = 134/221 (60%), Gaps = 2/221 (0%) Frame = +2 Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 A +LIR EL PG L GD Q+YN I+TAHA N LVP+++GA Sbjct: 30 AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 PD+AFPR+NNI F VE GAGTG TVYPPLS +H G SVDLAIFS Sbjct: 90 PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFS 149 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LHL+GISS + +LPLFV A+ +TA AGAIT+L Sbjct: 150 LHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITML 209 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 LTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PG Sbjct: 210 LTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPG 250 >UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931; cellular organisms|Rep: Cytochrome c oxidase subunit 1 - Arabidopsis thaliana (Mouse-ear cress) Length = 527 Score = 215 bits (525), Expect = 9e-55 Identities = 112/218 (51%), Positives = 134/218 (61%), Gaps = 2/218 (0%) Frame = +2 Query: 11 LLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 +LIR EL PG I G+ Q+YN ++TAHA N VP+++GAPD+ Sbjct: 36 VLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDM 95 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364 AFPR+NNI F +VE G+GTG TVYPPLS +H G +VDLAIFSLHL Sbjct: 96 AFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHL 155 Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544 +G+SS + +LPLFV +V +TAF AGAIT+LLTD Sbjct: 156 SGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTD 215 Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 RN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG Sbjct: 216 RNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 253 >UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Periclimenes thermohydrophilus|Rep: Cytochrome oxidase subunit I - Periclimenes thermohydrophilus Length = 217 Score = 210 bits (514), Expect = 2e-53 Identities = 117/202 (57%), Positives = 135/202 (66%) Frame = -2 Query: 612 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 433 NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59 Query: 432 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 253 +R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119 Query: 252 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 73 L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+ Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179 Query: 72 L*I*SSPINDPGFPNSARIKSL 7 L I S PI PG PNSARIKSL Sbjct: 180 L-IWSFPIKLPGCPNSARIKSL 200 >UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; cellular organisms|Rep: Cytochrome c oxidase subunit 1 - Chondrus crispus (Carragheen) Length = 532 Score = 210 bits (513), Expect = 2e-53 Identities = 110/220 (50%), Positives = 135/220 (61%), Gaps = 2/220 (0%) Frame = +2 Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178 + +LIR EL P + L+G+ QIYN ++TAHA N LVP+++G+P Sbjct: 39 MSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSP 98 Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358 D+AFPR+NNI F +VE G GTG TVYPPLSS +H G +VDLAIFSL Sbjct: 99 DMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSL 158 Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538 H++G SS S ++PLFV ++ +TAF AGAIT+LL Sbjct: 159 HISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLL 218 Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 TDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPG Sbjct: 219 TDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPG 258 >UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; Bilateria|Rep: Cytochrome c oxidase subunit I - Homalopoma maculosa Length = 219 Score = 209 bits (510), Expect = 6e-53 Identities = 111/204 (54%), Positives = 124/204 (60%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 AL LLIR ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD Sbjct: 15 ALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPD 74 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NN+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLH Sbjct: 75 MAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLH 134 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAG+SS + + LFV +V ITA AGAIT+LLT Sbjct: 135 LAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLT 194 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF 613 DRN NTSFFDPAGGGDPILYQHLF Sbjct: 195 DRNFNTSFFDPAGGGDPILYQHLF 218 >UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I - Placozoan sp. BZ2423 Length = 498 Score = 204 bits (497), Expect = 2e-51 Identities = 107/208 (51%), Positives = 126/208 (60%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 A +LIR EL +PGS++GDD +YN IVTAHA N VPL++GAPD Sbjct: 33 AFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPD 92 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NNI F +VE GAGTG TVYPPL+S AH G SVD+AIFSLH Sbjct: 93 MAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLH 152 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAG+SS + ++PLFV +V ITA AGAIT+LLT Sbjct: 153 LAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLT 212 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFG 625 DR NT+FFDPAGGGDPILYQHLF FFG Sbjct: 213 DRYFNTTFFDPAGGGDPILYQHLFWFFG 240 >UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha precursor (DNA endonuclease I-SceIV) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep: Intron-encoded DNA endonuclease aI5 alpha precursor (DNA endonuclease I-SceIV) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I- SceIV)] - Saccharomyces cerevisiae (Baker's yeast) Length = 630 Score = 199 bits (485), Expect = 6e-50 Identities = 108/221 (48%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Frame = +2 Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 A+ L+IR EL PGS L G+ Q++N +V HA N L+PL++GA Sbjct: 31 AMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGA 90 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 D AFPRINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+ Sbjct: 91 TDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFA 150 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LHL ISS + +LPLFV ++ ITAF + IT+L Sbjct: 151 LHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITML 210 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 L DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PG Sbjct: 211 LLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPG 251 >UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep: Cytochrome oxidase subunits 1 and 2 polyprotein - Phaeosphaeria nodorum SN15 Length = 789 Score = 198 bits (482), Expect = 1e-49 Identities = 108/220 (49%), Positives = 126/220 (57%), Gaps = 1/220 (0%) Frame = +2 Query: 2 ALRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178 A +LIR EL PG I D+Q+YN+I+TAHA N L+PL LG P Sbjct: 32 AFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGP 91 Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358 D+ FPR+NNI + +ENG GTG T+YPPLS +H G SVDLAIF L Sbjct: 92 DMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGL 151 Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538 HL+GISS +L LF AV ITA AG IT++L Sbjct: 152 HLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVL 211 Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 TDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PG Sbjct: 212 TDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPG 251 >UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|Rep: Endonuclease - Saccharomyces servazzii (Yeast) Length = 675 Score = 196 bits (478), Expect = 4e-49 Identities = 106/221 (47%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Frame = +2 Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 A+ ++IR EL PGS L G+ Q++N +V HA N ++PL++GA Sbjct: 31 AMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGA 90 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 D++FPRIN+I F +VE+GAGTG TVYPPLSS AH G SVDLAIFS Sbjct: 91 TDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFS 150 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LHL ISS S ++PLFV A+ ITAF + IT+L Sbjct: 151 LHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITML 210 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 L DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PG Sbjct: 211 LMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPG 251 >UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; Eukaryota|Rep: Cytochrome c oxidase subunit I - Paracoccidioides brasiliensis Length = 710 Score = 191 bits (466), Expect = 1e-47 Identities = 102/220 (46%), Positives = 125/220 (56%), Gaps = 1/220 (0%) Frame = +2 Query: 2 ALRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178 A +LIR EL PG I D+Q+YN+I+T+H N L+P+++G P Sbjct: 58 AFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGP 117 Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358 D+AFPR+NN+ + I+ENG GTG T+YPPLS +H VDL IF L Sbjct: 118 DMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGL 177 Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538 HL+GISS +L LF AV ITA A AIT+LL Sbjct: 178 HLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLL 237 Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 TDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+PG Sbjct: 238 TDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPG 277 >UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI5 (EC 3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable intron-encoded endonuclease aI5 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago maydis (Smut fungus) Length = 536 Score = 189 bits (461), Expect = 5e-47 Identities = 104/206 (50%), Positives = 120/206 (58%), Gaps = 2/206 (0%) Frame = +2 Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 A +LIR EL PG L GD Q+YN I+TAHA N LVP+++GA Sbjct: 30 AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 PD+AFPR+NNI F VE GAGTG TVYPPLS +H G SVDLAIFS Sbjct: 90 PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFS 149 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LHL+GISS + +LPLFV A+ +TA AGAIT+L Sbjct: 150 LHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITML 209 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF 613 LTDRN NTSF+DPAGGGDPILYQHLF Sbjct: 210 LTDRNFNTSFYDPAGGGDPILYQHLF 235 >UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 - Naegleria gruberi Length = 633 Score = 186 bits (453), Expect = 5e-46 Identities = 101/220 (45%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Frame = +2 Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178 L +L+R EL PG L G+ YN I T H N VP+++GAP Sbjct: 35 LSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAP 94 Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358 D++FPR+NN F E G GTG TVYPPLSS +H G SVDL IFS Sbjct: 95 DMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSF 154 Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538 HL GI S LPLFV +V +T+F A AIT+LL Sbjct: 155 HLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLL 214 Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPG Sbjct: 215 FDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPG 254 >UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 precursor (DNA endonuclease I- SceII) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]; n=4; Saccharomycetales|Rep: Intron-encoded DNA endonuclease aI4 precursor (DNA endonuclease I- SceII) [Contains: Truncated non-functional cytochrome oxidase 1; DNA endonuclease aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)] - Saccharomyces cerevisiae (Baker's yeast) Length = 556 Score = 178 bits (434), Expect = 9e-44 Identities = 102/229 (44%), Positives = 128/229 (55%), Gaps = 2/229 (0%) Frame = +2 Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 A+ L+IR EL PGS L G+ Q++N +V HA N L+PL++GA Sbjct: 31 AMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGA 90 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 D AFPRINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+ Sbjct: 91 TDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFA 150 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LHL ISS + +LPLFV ++ ITAF + IT+L Sbjct: 151 LHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITML 210 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWYNFSYY 682 L DRN NTSFF+ +GGGDPILY+HLF FFG I++L + YN ++ Sbjct: 211 LLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML--MMYNDMHF 257 >UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast) Length = 763 Score = 177 bits (430), Expect = 3e-43 Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 2/220 (0%) Frame = +2 Query: 2 ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 +L +L+R EL NP L+ + Q++N ++TAHA N LVPL +G+ Sbjct: 48 SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+ Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LHL+G+SS + +LPLFV +V ITA A +T+L Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 L DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVP 267 >UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast) Length = 676 Score = 177 bits (430), Expect = 3e-43 Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 2/220 (0%) Frame = +2 Query: 2 ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 +L +L+R EL NP L+ + Q++N ++TAHA N LVPL +G+ Sbjct: 48 SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+ Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LHL+G+SS + +LPLFV +V ITA A +T+L Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 L DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVP 267 >UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; cellular organisms|Rep: Cytochrome c oxidase subunit I - Pandaka lidwilli Length = 507 Score = 176 bits (429), Expect = 4e-43 Identities = 98/191 (51%), Positives = 111/191 (58%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 AL LLIRAEL PG+L+GDDQIYN IVTAHA N L+PL++GAPD Sbjct: 21 ALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPD 80 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NN+ F +E GAGTG TVYPPL+ N+AH G SVDL IFSLH Sbjct: 81 MAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLH 140 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 LAGISS S Q PLFV AV ITA A IT+LLT Sbjct: 141 LAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLT 200 Query: 542 DRNLNTSFFDP 574 DRNLNT+FFDP Sbjct: 201 DRNLNTTFFDP 211 >UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I - Trichoderma reesei (Hypocrea jecorina) Length = 635 Score = 173 bits (422), Expect = 3e-42 Identities = 100/224 (44%), Positives = 124/224 (55%), Gaps = 5/224 (2%) Frame = +2 Query: 2 ALRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178 A +LIR EL PG I ++Q+YN+I+TAHA N L+PL++G P Sbjct: 60 AFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGP 119 Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLA 346 D+AFPR+NNI F I+E G GTG T+ YPPLS +H G SVDLA Sbjct: 120 DMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLA 179 Query: 347 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 526 IF+LHL+G+SS +L LF A + I Sbjct: 180 IFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWATWSSRSRYFL-------GI 232 Query: 527 TILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 T++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PG Sbjct: 233 TMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPG 276 >UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; n=1; Saccharomyces castellii|Rep: I-SceII DNA endonuclease-like protein - Saccharomyces castellii (Yeast) Length = 598 Score = 170 bits (413), Expect = 3e-41 Identities = 94/210 (44%), Positives = 118/210 (56%), Gaps = 2/210 (0%) Frame = +2 Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 A+ L+IR EL PG L G++Q++N +V HA N ++PL++GA Sbjct: 31 AMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGA 90 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 D AFPRINNI F +VE+GAGTG TVYPPL+S AH G SVDLAIF+ Sbjct: 91 TDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFA 150 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LH+ ISS + +LPLFV A+ ITA + +T+L Sbjct: 151 LHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTML 210 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFG 625 L DRN NTSFF+ AGGGDPILY+HLF FFG Sbjct: 211 LLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240 >UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular organisms|Rep: Cytochrome-c oxidase - Jannaschia sp. (strain CCS1) Length = 628 Score = 169 bits (410), Expect = 7e-41 Identities = 86/214 (40%), Positives = 119/214 (55%), Gaps = 2/214 (0%) Frame = +2 Query: 20 RAELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 193 +A LG L G D ++N ++T H N +PL++GAPD+AFP Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201 Query: 194 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 373 R+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261 Query: 374 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 553 SS + ++PLF +V +TA+ AGAIT+LLTDRN Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321 Query: 554 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP Sbjct: 322 GTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILP 355 >UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteobacteria|Rep: Cytochrome-c oxidase - Sphingomonas sp. SKA58 Length = 556 Score = 164 bits (398), Expect = 2e-39 Identities = 90/202 (44%), Positives = 113/202 (55%), Gaps = 4/202 (1%) Frame = +2 Query: 65 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 244 ++N ++TAH N VP+++GAPD+AFPR+NNI F Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152 Query: 245 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 412 V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211 Query: 413 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 592 + ++PLFV +V +TAF A AIT+LLTDRN T+F+D AGGGDP Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDP 271 Query: 593 ILYQHLF*FFGHPEVYILILPG 658 LYQHLF FFGHPEVYI+ILPG Sbjct: 272 ELYQHLFWFFGHPEVYIMILPG 293 >UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa group|Rep: COX1-i5 protein - Yarrowia lipolytica (Candida lipolytica) Length = 608 Score = 160 bits (389), Expect = 3e-38 Identities = 92/218 (42%), Positives = 117/218 (53%), Gaps = 2/218 (0%) Frame = +2 Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178 L +IR EL N GS L G+ Q +N ++TAHA N L+PL+LGA Sbjct: 37 LSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGAS 96 Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358 D+AF R+NNI F +VE GAGTG TVY PL+ +H G +VDLAIFSL Sbjct: 97 DMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSL 156 Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538 HL+G SS ++ +PLF AV TA A +T+ + Sbjct: 157 HLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGI 216 Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 652 DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L Sbjct: 217 FDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254 >UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Naupactini|Rep: Cytochrome c oxidase subunit I - Galapaganus collaris Length = 406 Score = 159 bits (385), Expect = 8e-38 Identities = 87/156 (55%), Positives = 96/156 (61%) Frame = +2 Query: 161 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 340 L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63 Query: 341 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 520 LAIFSLH+AG+ S + ++PLFV AV ITA AG Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123 Query: 521 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 628 AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159 >UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep: Cox-i3 protein - Candida stellata (Yeast) Length = 588 Score = 158 bits (384), Expect = 1e-37 Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Frame = +2 Query: 2 ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 +L +L+R EL NP L+ + Q++N ++TAHA N LVPL +G+ Sbjct: 48 SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+ Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LHL+G+SS + +LPLFV +V ITA A +T+L Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 652 L DRN NTSFF +GGGDP+LY+H+F FFG P + I+I+ Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268 >UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep: Cox-i2 protein - Candida stellata (Yeast) Length = 586 Score = 151 bits (366), Expect = 2e-35 Identities = 88/229 (38%), Positives = 124/229 (54%), Gaps = 2/229 (0%) Frame = +2 Query: 2 ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 +L +L+R EL NP L+ + Q++N ++TAHA N LVPL +G+ Sbjct: 48 SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+ Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 LHL+G+SS + +LPLFV +V ITA A +T+L Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWYNFSYY 682 L DRN NTSFF +GGGDP+LY+H+ F+ +P +LIL IW Y Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP---VLIL--IWLTSGIY 269 >UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eukaryota|Rep: Cytochrome c oxidase subunit 1 - Leishmania tarentolae (Sauroleishmania tarentolae) Length = 549 Score = 149 bits (362), Expect = 5e-35 Identities = 82/217 (37%), Positives = 106/217 (48%), Gaps = 2/217 (0%) Frame = +2 Query: 11 LLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 L IR EL G L GD Q YN ++T+H N +P++ G PD+ Sbjct: 36 LFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDM 95 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364 FPR+NN+ F + E G G G T+YP L H + D +F++HL Sbjct: 96 VFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHL 155 Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544 GISS SF LF+ A ITA AG +T++L D Sbjct: 156 LGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCD 215 Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 RN NTSF+D GGGD IL+QH+F FFGHPEVYI++LP Sbjct: 216 RNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLP 252 >UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; Nematoda|Rep: Cytochrome c oxidase subunit I - Onchocerca volvulus Length = 548 Score = 149 bits (361), Expect = 6e-35 Identities = 81/219 (36%), Positives = 109/219 (49%), Gaps = 2/219 (0%) Frame = +2 Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178 L +LIR EL +PG G Q+YN+++T H N ++PL+LGAP Sbjct: 42 LSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAP 101 Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358 ++AFPR+N + F + G G+ T YPPLS S+D I L Sbjct: 102 EMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGL 160 Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538 H GI S + DQ+ +FV +T+F AG++ LL Sbjct: 161 HTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLL 220 Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 DRN NTSF+D GG+P+LYQHLF FFGHPEVY++ILP Sbjct: 221 LDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILP 259 >UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula unguis Length = 573 Score = 139 bits (337), Expect = 5e-32 Identities = 77/214 (35%), Positives = 109/214 (50%), Gaps = 1/214 (0%) Frame = +2 Query: 17 IRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 196 +R EL +PG + +Y++I+T HA N +PL++ D++ PR Sbjct: 39 MRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPR 98 Query: 197 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 376 +NN+ + G G G T+YPPLS++ G +DLA+FSLH+AG+S Sbjct: 99 LNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMS 158 Query: 377 SXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 553 S F L P+ + + T+ A +T+LL DR+ Sbjct: 159 SIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHF 218 Query: 554 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP Sbjct: 219 STSFYYPEGGGDPILWQHLFWFFGHPEVYILILP 252 >UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI4 (EC 3.1.-.-)]; n=3; Basidiomycota|Rep: Probable intron-encoded endonuclease aI4 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago maydis (Smut fungus) Length = 530 Score = 127 bits (307), Expect = 2e-28 Identities = 76/175 (43%), Positives = 90/175 (51%), Gaps = 2/175 (1%) Frame = +2 Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 A +LIR EL PG L GD Q+YN I+TAHA N LVP+++GA Sbjct: 30 AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 PD+AFPR+NNI F VE GAGTG TVYPPLS +H G SVDLAIFS Sbjct: 90 PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFS 149 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 520 LHL+GISS + +LPLFV A+ +TA AG Sbjct: 150 LHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204 >UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; Alveolata|Rep: Cytochrome c oxidase subunit 1 - Plasmodium falciparum Length = 476 Score = 123 bits (296), Expect = 5e-27 Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 4/221 (1%) Frame = +2 Query: 5 LRLLIRAELGNPG-SLIGDDQI--YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 L +++R EL + +I + + YN I T H N +P++ G+ Sbjct: 35 LSVILRTELYSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGS 94 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIF 352 P++A+PRIN+I E G GTG T+YPPLS+++ +VD+ IF Sbjct: 95 PELAYPRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIF 154 Query: 353 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 532 L ++G++S + L + ++ IT+ G + + Sbjct: 155 GLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLM 214 Query: 533 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 LL+D + NT FFDP GDPILYQHLF FFGHPEVYILILP Sbjct: 215 LLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILP 255 >UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Theileria|Rep: Cytochrome c oxidase subunit 1 - Theileria parva Length = 481 Score = 122 bits (295), Expect = 6e-27 Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 3/221 (1%) Frame = +2 Query: 5 LRLLIRAELGNPG-SLIGDD--QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 + +LIR EL G +I D +IYN + T H N L P++LG Sbjct: 38 MSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGY 97 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355 D+ +PR+N +E G+GTG T+YPPLS+++++ G +D IF Sbjct: 98 CDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFG 155 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 L AGI+S D++ ++ +T+F ++ Sbjct: 156 LLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMV 215 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+ILPG Sbjct: 216 FLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILPG 256 >UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; Bilateria|Rep: Cytochrome c oxidase subunit I - Schistosoma mansoni (Blood fluke) Length = 609 Score = 122 bits (294), Expect = 8e-27 Identities = 80/218 (36%), Positives = 101/218 (46%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 L LLIR L +P + +YN +VT H N +P+ L D+ Sbjct: 131 LSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDL 190 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364 PR+N++ G G G T+YPPLS G VD +FSLHL Sbjct: 191 LLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHL 247 Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544 AG+SS S + V A T+ A IT+LL D Sbjct: 248 AGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSLPVLASGITMLLFD 302 Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 RN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPG Sbjct: 303 RNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPG 340 >UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Dicyema misakiense|Rep: Cytochrome c oxidase subunit I - Dicyema misakiense Length = 473 Score = 117 bits (282), Expect = 2e-25 Identities = 76/215 (35%), Positives = 102/215 (47%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 LL R +L P L D +YN VT H N L+P PD+ F Sbjct: 32 LLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLF 89 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 PR+N + F ++ + A G T YPPLSS SV+ ++FSLHLAG Sbjct: 90 PRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAG 140 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 I+S + L LF ++ + + A IT++LTD++ Sbjct: 141 IASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKH 198 Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 L T F+D GGDP+LYQHLF FFGHPEVY++ILP Sbjct: 199 LGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILP 233 >UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacterineae|Rep: Cytochrome-c oxidase - Anaeromyxobacter sp. Fw109-5 Length = 596 Score = 111 bits (267), Expect = 2e-23 Identities = 72/217 (33%), Positives = 96/217 (44%), Gaps = 8/217 (3%) Frame = +2 Query: 68 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 247 Y I T H N L+PL++GA D+AFPR+N F Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145 Query: 248 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 424 G AG G T Y PLS+N+ G L + ++ + G+SS Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205 Query: 425 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGD 589 ++ +LPL + + +TA A +LL DR+ T FF GGGD Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265 Query: 590 PILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694 PIL+QHLF FGHPEVYI+ILP GI + +F RK Sbjct: 266 PILWQHLFWIFGHPEVYIMILPAWGILGDVLSFFARK 302 >UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena gracilis|Rep: Cytochrome oxidase subunit I - Euglena gracilis Length = 495 Score = 111 bits (267), Expect = 2e-23 Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 6/223 (2%) Frame = +2 Query: 5 LRLLIRAELGNPGSLI----GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 172 + +LIR EL G I + IYN +T H N L+P+++G Sbjct: 39 ISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIG 98 Query: 173 APDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAHR-GRSVDLA 346 +++ PR+N I F ++ +G T+YPPLS+ A G ++DL+ Sbjct: 99 TSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLS 158 Query: 347 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 526 + +H+ GISS +F + ++ ++ +T+ AI Sbjct: 159 LLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAI 218 Query: 527 TILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 T LL DRN+N++ +D G DP+LYQHLF FFGHPEVY++ILP Sbjct: 219 TGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILP 259 >UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like terminal oxidase, subunit I - Haloquadratum walsbyi (strain DSM 16790) Length = 634 Score = 110 bits (264), Expect = 4e-23 Identities = 80/223 (35%), Positives = 107/223 (47%), Gaps = 8/223 (3%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 +L+R EL +PG + + YN+++T+H N L+PL++GA D+AF Sbjct: 117 VLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAF 175 Query: 191 PRINNIRFXXXXXXXXXXXXXX--IVEN-GAGTG*TVYPPLS-----SNIAHRGRSVDLA 346 PRIN I F I E A TG T+Y PLS N A+ G VDL Sbjct: 176 PRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLM 233 Query: 347 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 526 + LHL+G+S+ S+ L +F + + AI Sbjct: 234 LLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAI 293 Query: 527 TILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 +LL DRN TSFF AG G IL+QHLF FFGHPEVYI++LP Sbjct: 294 MMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLP 334 >UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase, subunit I - Myxococcus xanthus (strain DK 1622) Length = 556 Score = 109 bits (262), Expect = 6e-23 Identities = 72/216 (33%), Positives = 97/216 (44%), Gaps = 1/216 (0%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 LLIR EL PG I D YN T H N ++PL+LGA D+AF Sbjct: 65 LLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAF 124 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 PR+N + ++ G TG T Y P S AH +V +F + G Sbjct: 125 PRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIG 180 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 SS ++ ++PLFV A+ T+ G + +L+T N Sbjct: 181 FSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATS-CIQVLATPVIGLLLVLVTVEN 239 Query: 551 L-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 L FDPA GGDP+L+QHLF F+ HP VYI++LP Sbjct: 240 LFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLP 275 >UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces maris DSM 8797 Length = 754 Score = 109 bits (262), Expect = 6e-23 Identities = 69/216 (31%), Positives = 95/216 (43%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 LL+R +L P + +++N + T H N VPL++GA D+AF Sbjct: 55 LLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIGARDVAF 113 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 PR+N+ F + + G Y PLSS + VD I L + G Sbjct: 114 PRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWIIGLLIMG 173 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 I S S ++PLFV + + A A+ +LL DR Sbjct: 174 IGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAMLLIDRW 233 Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 L ++FFDP GG +L+QH F FGHPEVYILILPG Sbjct: 234 LGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPG 269 >UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; cellular organisms|Rep: Cytochrome C oxidase subunit I - Rhizobium loti (Mesorhizobium loti) Length = 623 Score = 109 bits (261), Expect = 8e-23 Identities = 72/220 (32%), Positives = 99/220 (45%), Gaps = 1/220 (0%) Frame = +2 Query: 5 LRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 L LL+R +L P + IG D+ YN I T H LVPL++G Sbjct: 50 LALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVGTRH 107 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 IAFPR+N + V+ G G Y PLS G+ D+ + Sbjct: 108 IAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMIT 167 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 +S+ S D++PLFV ++ +T+F A T L+ Sbjct: 168 FTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLIL 227 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661 DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP + Sbjct: 228 DRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAV 267 >UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; Bacteria|Rep: Cytochrome c oxidase subunit I - Synechococcus sp. (strain CC9311) Length = 564 Score = 109 bits (261), Expect = 8e-23 Identities = 71/235 (30%), Positives = 103/235 (43%), Gaps = 5/235 (2%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 L +++R EL P + + D +YN + T H N L+P ++GAPD+ Sbjct: 57 LAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDM 115 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFS 355 AFP++N F G A +G YPP+S + + H L I + Sbjct: 116 AFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILA 175 Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535 + L+GISS F ++P+FV G +L Sbjct: 176 VALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVML 235 Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694 L D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP GI+ + RK Sbjct: 236 LFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFSELFPVYARK 290 >UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I - Aquifex aeolicus Length = 485 Score = 107 bits (257), Expect = 3e-22 Identities = 65/206 (31%), Positives = 94/206 (45%) Frame = +2 Query: 38 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 217 PG + D + YN ++T H N L+PL++GA D+AFPR+N + + Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61 Query: 218 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 397 I N T T YPP S N + L +F +HL G SS Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119 Query: 398 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 577 +F + LFV + AGA+T+L D+ L T+FF+PA Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179 Query: 578 GGGDPILYQHLF*FFGHPEVYILILP 655 GGDP++YQ++F F+ HP VY+ +LP Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLP 205 >UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38; Bacteria|Rep: Cytochrome c oxidase subunit I type - Anaeromyxobacter sp. Fw109-5 Length = 555 Score = 107 bits (256), Expect = 3e-22 Identities = 67/217 (30%), Positives = 96/217 (44%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 LLIR EL PG I D YN + T H N L+P+++GA D+AF Sbjct: 58 LLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAF 117 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 P++N + F +V+ GA TG T Y P S+ + V L F L G Sbjct: 118 PKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---G 173 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 SS + +LPLFV ++ T+ ++ ++ + Sbjct: 174 FSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHA 233 Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661 FDPA GGDP+L+QH F F+ HP VYI++LP + Sbjct: 234 FGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAM 270 >UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp. RS-1 Length = 641 Score = 105 bits (253), Expect = 8e-22 Identities = 74/230 (32%), Positives = 98/230 (42%), Gaps = 2/230 (0%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 LL+R +LG P + +YN + T H N +VPL++GA D+AF Sbjct: 54 LLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMIGARDMAF 112 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 PR+N + V G Y PL+ VD I + L G Sbjct: 113 PRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWIVGIGLTG 172 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 ++S + +++PLFV + AF A LL DR+ Sbjct: 173 VASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRH 232 Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694 T FF P GGD +L+QHLF FFGHPEVYILILP GI F+RK Sbjct: 233 FGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIISEVLPTFSRK 282 >UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1); n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) - Synechocystis sp. (strain PCC 6803) Length = 551 Score = 105 bits (252), Expect = 1e-21 Identities = 70/213 (32%), Positives = 92/213 (43%) Frame = +2 Query: 17 IRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 196 +R EL P ++YN ++T H N L+PL++G D+AFPR Sbjct: 52 MRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPR 110 Query: 197 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 376 +N + F V G T YPPLS G +L I SL L G S Sbjct: 111 LNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTS 167 Query: 377 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 556 S +PLF A+ T+ A A+ +L D Sbjct: 168 SILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAG 227 Query: 557 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 TSFF+P GGGDP++YQHLF F+ HP VYI+ILP Sbjct: 228 TSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILP 260 >UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4; Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1 - Halobacterium salinarium (Halobacterium halobium) Length = 593 Score = 104 bits (250), Expect = 2e-21 Identities = 68/217 (31%), Positives = 98/217 (45%), Gaps = 2/217 (0%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 LL+R EL + +YN ++T+H N +PL++ A D+AF Sbjct: 91 LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364 PRIN I F ++ A T T+Y PLS ++ +VD+ + LHL Sbjct: 150 PRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHL 207 Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544 G+S+ + L +F + + A+ +LL D Sbjct: 208 TGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLD 267 Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 RN T+FF AGG DPI +QHLF FFGHPEVY+L+LP Sbjct: 268 RNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLP 303 >UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; Actinobacteria (class)|Rep: Cytochrome c oxidase subunit 1 - Corynebacterium glutamicum (Brevibacterium flavum) Length = 584 Score = 103 bits (246), Expect = 6e-21 Identities = 73/233 (31%), Positives = 100/233 (42%), Gaps = 3/233 (1%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 + LLIRAEL PG ++ +N + T H N ++PL +GAPD+ Sbjct: 59 MALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIGAPDV 117 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAIFSLH 361 AFPR+N F + GA G T+Y PLS I G D+ I + Sbjct: 118 AFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWIVGVG 177 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 GI S + ++P+F + + + A +L Sbjct: 178 ATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAALGVLY 237 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694 DR L +DPA GG +L+QHLF FFGHPEVY+L LP GI F+RK Sbjct: 238 DRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVSEIIPVFSRK 289 >UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides borealis Length = 513 Score = 101 bits (241), Expect = 2e-20 Identities = 55/102 (53%), Positives = 63/102 (61%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 AL LLIRAELG PG+L+GDDQ N IVTAHA N LVPL++GAPD Sbjct: 33 ALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPD 92 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 307 +AFPR+NN+ F VE GAGTG TVYPPL+ Sbjct: 93 MAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134 >UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1; Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III - Aeropyrum pernix Length = 815 Score = 99.5 bits (237), Expect = 7e-20 Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 2/222 (0%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 +L LL R +L P S Y VT H N +VPL +GA D Sbjct: 41 SLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQIGARD 99 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSL 358 +AFPR+N + + E+GA G T+Y PL++ I G +DLA ++ Sbjct: 100 LAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLAALAI 159 Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538 L +S + ++P+F ++ T +LL Sbjct: 160 FLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGGALLL 219 Query: 539 TDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGI 661 DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P + Sbjct: 220 LDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPAL 259 >UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxidase, subunit 1; n=2; Thermoprotei|Rep: Heme/copper-type cytochrome/quinol oxidase, subunit 1 - Cenarchaeum symbiosum Length = 508 Score = 98.7 bits (235), Expect = 1e-19 Identities = 76/234 (32%), Positives = 104/234 (44%), Gaps = 3/234 (1%) Frame = +2 Query: 2 ALRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178 AL LLIRAEL PG+ I D +N + T H N VP+++ Sbjct: 40 ALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMVRYK 98 Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358 D+A+P++N I F + T PP S I+ G + D+ IF L Sbjct: 99 DMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWIFGL 152 Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538 + GISS S Q+PL + ++ A A+ +LL Sbjct: 153 KILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALLMLL 212 Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694 TDR + FF+PA GGDPI Y HLF F HPEVY+L++P G+ Y F+RK Sbjct: 213 TDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEMVPRFSRK 266 >UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus thermophilus|Rep: Cytochrome c oxidase polypeptide I+III (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) Length = 791 Score = 97.9 bits (233), Expect = 2e-19 Identities = 67/231 (29%), Positives = 98/231 (42%), Gaps = 3/231 (1%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 LLIR +L P + + YN I+T H N +VPL+LGA D+A Sbjct: 47 LLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVAL 106 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 367 PR+N + GA G T Y P S A VD + ++ L Sbjct: 107 PRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLL 163 Query: 368 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 547 G SS S ++P++V +V + A ++L +R Sbjct: 164 GFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLER 223 Query: 548 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694 + S+F+PA GGDP+L+Q F F+ HP VY+++LP GI + F RK Sbjct: 224 KIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILAEVASTFARK 274 >UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600, subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45; Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600, subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus subtilis Length = 649 Score = 97.5 bits (232), Expect = 3e-19 Identities = 67/231 (29%), Positives = 96/231 (41%), Gaps = 2/231 (0%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 L++RA+L P + D YN I T H N +VPL +GA D+AF Sbjct: 76 LMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAF 134 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 P +NN+ F ++ G T Y PL+SN G + + L +AG Sbjct: 135 PYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAG 194 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 I + + ++P+F IT A+ +L DR Sbjct: 195 IGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRL 254 Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRKR 697 FF GG P+L+ +LF +GHPEVYI+ILP GI+ F RK+ Sbjct: 255 FGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIISSFARKQ 305 >UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis Length = 622 Score = 97.5 bits (232), Expect = 3e-19 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 2/231 (0%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 + IR +L P + Q YN ++T H N +VPL +GA D++F Sbjct: 47 MFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSF 105 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 P +N + F + G T Y LS + +G +D + L ++G Sbjct: 106 PFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFVLGLQISG 163 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 + + ++ +LPLF + + + +++ DR Sbjct: 164 LGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRL 223 Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRKR 697 T+FF+P GG+ ++++HLF FGHPEVYILILP GI+ F RKR Sbjct: 224 FGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFSEVIPVFARKR 274 >UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Watasenia scintillans|Rep: Cytochrome c oxidase subunit I - Watasenia scintillans (Sparkling enope) Length = 217 Score = 95.9 bits (228), Expect = 8e-19 Identities = 55/126 (43%), Positives = 67/126 (53%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 +L L+IR ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD Sbjct: 16 SLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPD 75 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+NN+ F + G + PL G SVDLAIF LH Sbjct: 76 MAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLH 133 Query: 362 LAGISS 379 LAG+SS Sbjct: 134 LAGVSS 139 >UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4; cellular organisms|Rep: Cytochrome C oxidase subunit I /III - Pyrobaculum aerophilum Length = 800 Score = 94.7 bits (225), Expect = 2e-18 Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 6/178 (3%) Frame = +2 Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 322 N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+ Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143 Query: 323 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 502 + VDL + + +AG SS + LF +V + Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203 Query: 503 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGI 661 A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP + Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAM 261 >UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1; Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit 1 - Beggiatoa sp. PS Length = 525 Score = 94.3 bits (224), Expect = 3e-18 Identities = 66/219 (30%), Positives = 95/219 (43%), Gaps = 2/219 (0%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 + +LIR EL G I DD +YNT + H N +PL++GA D Sbjct: 35 MAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKD 94 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 +AFPR+N + + + T YPP S I H + FS+ Sbjct: 95 VAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVL 151 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILL 538 L G +S +++L +FV A + AF G A+T+L Sbjct: 152 LLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLT 210 Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP Sbjct: 211 FDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLP 249 >UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Blastopirellula marina DSM 3645|Rep: Cytochrome c oxidase subunit I - Blastopirellula marina DSM 3645 Length = 595 Score = 91.9 bits (218), Expect = 1e-17 Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 15/215 (6%) Frame = +2 Query: 62 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 241 + Y +VT HA N L+PL++GA D+AFP +N + + Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145 Query: 242 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 409 + +GA G T YPPLS ++ G + L + + G+SS Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205 Query: 410 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 574 + +LPL + A+ ITA A ++L DR + T FF P Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265 Query: 575 ------AGGGDPILYQHLF*FFGHPEVYILILPGI 661 AGGG P+L+QHLF F+ HP VYI+ILP + Sbjct: 266 NNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAM 300 >UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I - Roseovarius nubinhibens ISM Length = 818 Score = 91.1 bits (216), Expect = 2e-17 Identities = 61/217 (28%), Positives = 88/217 (40%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 L +LIRA+L P S + YN + T H L+P +LG+ D+ Sbjct: 50 LAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDL 108 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364 AFPR+ F + +G +YPPLSS + G + D + + Sbjct: 109 AFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITF 168 Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544 IS+ S ++P+F +TA +L + Sbjct: 169 VEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSILLELE 228 Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 R + FF A GGD +L+QHLF FGHPEVYI+ LP Sbjct: 229 RAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLP 265 >UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter shibae DFL 12|Rep: Cytochrome-c oxidase - Dinoroseobacter shibae DFL 12 Length = 853 Score = 90.6 bits (215), Expect = 3e-17 Identities = 60/215 (27%), Positives = 89/215 (41%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 LL+R +L P + + YN + T H L+PL++GA D+ F Sbjct: 78 LLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMIGARDLVF 136 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 PR+ + + + G +Y PLS++ G S D + + LA Sbjct: 137 PRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWLIGITLAE 196 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 I+S S ++P+ + + TAF +L +R Sbjct: 197 IASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSILLEAERL 256 Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 L FFD GGDP+L+QHLF FGHPEVYI+ LP Sbjct: 257 LGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLP 291 >UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus flagellatus KT|Rep: Cytochrome-c oxidase - Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) Length = 631 Score = 89.8 bits (213), Expect = 6e-17 Identities = 61/219 (27%), Positives = 90/219 (41%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 L LL+R +L P + D + YN + + H ++PL+LG D+ Sbjct: 57 LALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDM 115 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364 FPR+N + ++ G YPPL+ G +D + Sbjct: 116 TFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTF 175 Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544 IS+ S +++P+FV AV + +F A +L D Sbjct: 176 MEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALD 235 Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661 R FF A GDPIL+QHLF FFGHPEVYI+ +P + Sbjct: 236 RMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPAL 273 >UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I - Aplidium nordmanni Length = 227 Score = 87.8 bits (208), Expect = 2e-16 Identities = 70/203 (34%), Positives = 82/203 (40%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 L R L G +IG QI VTA A L PL +GAP +A Sbjct: 25 LXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAX 84 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 PR+ N+ F + G G VYPP SS +AH +VDL IF LHLAG Sbjct: 85 PRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAG 144 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 ISS ++ LF A AIT+L R Sbjct: 145 ISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRX 204 Query: 551 LNTSFFDPAGGGDPILYQHLF*F 619 N SFF P G P + F F Sbjct: 205 XNXSFFXPXXXGXPXXFPTFFXF 227 >UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteobacteria|Rep: Quinol oxidase subunit I - Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides) Length = 825 Score = 85.8 bits (203), Expect = 9e-16 Identities = 58/217 (26%), Positives = 89/217 (41%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 L +LIRA+L +P S + Y + T H L+P +LG+ D+ Sbjct: 50 LAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDL 108 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364 A+PR++ F + +G +YPPL+S + G + D + + Sbjct: 109 AYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITF 168 Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544 IS+ S D++P++ +TA +L + Sbjct: 169 VEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSILLELE 228 Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 R FF A GGD +L+QHLF FGHPEVYI+ LP Sbjct: 229 RAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLP 265 >UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c oxidase polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c oxidase polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum Length = 591 Score = 85.0 bits (201), Expect = 2e-15 Identities = 71/232 (30%), Positives = 96/232 (41%), Gaps = 15/232 (6%) Frame = +2 Query: 5 LRLLIRAELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 L L+R +LG PG+ D Y +T H N L+PL++GA D Sbjct: 59 LSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARD 118 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIF 352 + FP +N + + V G G G T+YPP + S + + L + Sbjct: 119 MVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLS 178 Query: 353 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAIT 529 SL L I + +LPL V + T G++ Sbjct: 179 SLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVM 238 Query: 530 ILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILP 655 +LL DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP Sbjct: 239 LLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALP 289 >UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia cenocepacia MC0-3 Length = 1004 Score = 84.2 bits (199), Expect = 3e-15 Identities = 59/217 (27%), Positives = 90/217 (41%) Frame = +2 Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190 L++R +L P + + Y+++ T H N L PL+LG+ D+AF Sbjct: 72 LVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLMLGSRDMAF 130 Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370 PR+ + + G Y PL+S G ++D+ + L G Sbjct: 131 PRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYGLGMILLG 190 Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550 IS+ S D+LP+ V + + A +L DRN Sbjct: 191 ISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFLLLWLDRN 250 Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661 T FFD A GG P+L+QHLF F HP VY+++LP + Sbjct: 251 AGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAM 287 >UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; Proteobacteria|Rep: Cytochrome c oxidase, subunit I - Mesorhizobium sp. (strain BNC1) Length = 845 Score = 83.0 bits (196), Expect = 6e-15 Identities = 61/218 (27%), Positives = 87/218 (39%), Gaps = 1/218 (0%) Frame = +2 Query: 5 LRLLIRAELGNP-GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181 L L++R +L P L+G D YN I T H L+P +L A D Sbjct: 60 LGLIMRTQLAVPENDLVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARD 117 Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 + FPR++ + G +YPPL+ G + D + + Sbjct: 118 LPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIG 177 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 IS+ S ++P+F A+ I A A +L Sbjct: 178 FIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATMLLEI 237 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 +R+ FF GGDP+L+QHLF FFGHPEVYI+ LP Sbjct: 238 ERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLP 275 >UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; Bacteria|Rep: Cytochrome C oxidase subunit I - Symbiobacterium thermophilum Length = 628 Score = 82.2 bits (194), Expect = 1e-14 Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 4/220 (1%) Frame = +2 Query: 14 LIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 193 ++R +L PG + + +N + T HA N +PL++GA D+AFP Sbjct: 53 IMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMIGARDVAFP 111 Query: 194 RINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSVDLAIFSLH 361 R+N + ++ G G Y L+S G D L Sbjct: 112 RLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGPDFWTLGLL 171 Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541 L GI + + ++P+FV +T+ A+ +L+ Sbjct: 172 LLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVTVALIMLMF 231 Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661 DR +FF+ GG + YQHLF FGHPEVYILILP + Sbjct: 232 DRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAM 271 >UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I; n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase, subunit I - Chromobacterium violaceum Length = 680 Score = 81.8 bits (193), Expect = 1e-14 Identities = 57/186 (30%), Positives = 81/186 (43%), Gaps = 2/186 (1%) Frame = +2 Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325 N +VPL +GA D+AFP +N++ F V N A TG YPPL+ Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184 Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505 VD I++L ++GI + +P+F Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244 Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSY 679 GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP GI+ Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFSEVVS 304 Query: 680 YFTRKR 697 F KR Sbjct: 305 TFAGKR 310 >UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1); n=20; cellular organisms|Rep: Alternative Cytochrome c oxidase polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1) - Microscilla marina ATCC 23134 Length = 635 Score = 81.8 bits (193), Expect = 1e-14 Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 14/233 (6%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 LR ++ + G L + + Y +VT H N L+PL +GA D+ Sbjct: 83 LRPILGGWITEAGKL--EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDM 140 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIF 352 A +N + + +E G +G +YPPLS+ ++ G + + + Sbjct: 141 ASGFMNMLSYWFFFGSSVIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLI 200 Query: 353 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 532 S+ L IS SF +LPL + A ITA A + Sbjct: 201 SMALFIISVLLGGINYITTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALL 260 Query: 533 LLTDRNLNTSFFDP----AG------GGDPILYQHLF*FFGHPEVYILILPGI 661 L+ DR+L TSFF AG GG P+L+QHLF F GHPEVYI+++P + Sbjct: 261 LIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPAL 313 >UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep: Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase BO(3) subunit 1) - Pseudomonas putida Length = 672 Score = 81.8 bits (193), Expect = 1e-14 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 2/186 (1%) Frame = +2 Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325 N VPL +GA D+AFP +N++ F V A TG YPPL+ Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183 Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505 G VD I++L L+G+ + +P+F Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243 Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSY 679 A+ +L DR L+ F GG+P++Y +LF +GHPEVYILILP G++ + Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFSEVTS 303 Query: 680 YFTRKR 697 F KR Sbjct: 304 TFAGKR 309 >UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes cretinus|Rep: Cytochrome c oxidase subunit I - Aedes cretinus Length = 153 Score = 80.2 bits (189), Expect = 4e-14 Identities = 39/65 (60%), Positives = 45/65 (69%) Frame = +2 Query: 161 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 340 L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60 Query: 341 LAIFS 355 LAI+S Sbjct: 61 LAIYS 65 Score = 59.7 bits (138), Expect = 7e-08 Identities = 29/56 (51%), Positives = 32/56 (57%) Frame = +1 Query: 460 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 627 CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152 >UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 - Sulfolobus acidocaldarius Length = 788 Score = 79.4 bits (187), Expect = 8e-14 Identities = 55/173 (31%), Positives = 77/173 (44%), Gaps = 1/173 (0%) Frame = +2 Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 322 N LVP ++GA D+ +P+IN + F ++ G +Y PLS + Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138 Query: 323 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 502 G +L +L L+G+SS + ++PLFV TA Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKVP--YLKMPLFVWGFFTTAILMIIA 196 Query: 503 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661 + +R T FFD A GG P+L+Q LF FFGHPEVYILILP + Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAM 249 >UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacteraceae|Rep: Cytochrome c, monohaem - Rhodobacter sphaeroides ATCC 17025 Length = 878 Score = 78.2 bits (184), Expect = 2e-13 Identities = 54/217 (24%), Positives = 85/217 (39%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 L +L+R +L PG+ +N T H L+P +LGA D+ Sbjct: 78 LAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDL 136 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364 FPR++ + + + +G +YPPL++ G D+ + L Sbjct: 137 PFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSF 194 Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544 ++S + +PL+ V + + + Sbjct: 195 IEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEME 254 Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 R + FFDP GGDP+L+QHLF FGHPEVYI+ LP Sbjct: 255 RGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291 >UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI2 (EC 3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable intron-encoded endonuclease aI2 precursor [Contains: Truncated non-functional cytochrome oxidase 1; Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago maydis (Smut fungus) Length = 533 Score = 78.2 bits (184), Expect = 2e-13 Identities = 47/107 (43%), Positives = 55/107 (51%), Gaps = 2/107 (1%) Frame = +2 Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 A +LIR EL PG L GD Q+YN I+TAHA N LVP+++GA Sbjct: 30 AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 316 PD+AFPR+NNI F VE GAGTG TV LS I Sbjct: 90 PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136 >UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; Deinococcus|Rep: Cytochrome c oxidase, subunit I - Deinococcus radiodurans Length = 820 Score = 75.4 bits (177), Expect = 1e-12 Identities = 54/217 (24%), Positives = 80/217 (36%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 L L IR +L P + YN ++T HA N +PL LG D+ Sbjct: 53 LALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDV 112 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364 A PR+N G T Y PL+ + G SV + L+ Sbjct: 113 ALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAVILN- 171 Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544 G+ S ++P+F ++ T+ A + + Sbjct: 172 -GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALLTYLE 230 Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 L S F+P GG P+LYQ F F+ HP VY+++LP Sbjct: 231 IKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLP 267 >UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) Length = 607 Score = 74.9 bits (176), Expect = 2e-12 Identities = 48/168 (28%), Positives = 72/168 (42%) Frame = +2 Query: 152 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 331 L+P +LGA D+ FPR++ F V G + PPL++ G Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226 Query: 332 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 511 + D + + IS+ + ++P+F A+ + A Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286 Query: 512 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLP 334 >UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas eutropha (strain C71) Length = 703 Score = 73.7 bits (173), Expect = 4e-12 Identities = 52/170 (30%), Positives = 71/170 (41%) Frame = +2 Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325 N +VPL +GA D+AFP +N+I +V + G YPP + + + Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203 Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505 G VD I+SL LA + S +PLF TA Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263 Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 L DR L+ FF GG+ + + ++F FGHPEVYILILP Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILP 313 >UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III; n=2; Thermoplasmatales|Rep: Cytochrome c oxidase polypeptide I/III - Picrophilus torridus Length = 841 Score = 73.7 bits (173), Expect = 4e-12 Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 1/177 (0%) Frame = +2 Query: 152 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 328 L+PL +G+ D+ +PR+N + + + G TG TVY PLSS Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170 Query: 329 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 508 D A ++ L GI + LPLFV AV A Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230 Query: 509 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWYNFSY 679 G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG F Y Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTGAMFDY 286 >UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 - Tetrahymena pyriformis Length = 698 Score = 73.7 bits (173), Expect = 4e-12 Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 3/128 (2%) Frame = +2 Query: 281 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 451 G T P SSNI + G S D+ I S+ AGIS+ + + Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342 Query: 452 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 631 P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402 Query: 632 EVYILILP 655 EVY+LI+P Sbjct: 403 EVYVLIIP 410 Score = 44.4 bits (100), Expect = 0.003 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 AL +IR EL +P S GD Y +VTAH N L+P +G+ Sbjct: 80 ALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGS 139 Query: 176 PDIAFPRINNIRF 214 D+A+PR+N+I F Sbjct: 140 KDVAYPRLNSIGF 152 >UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase subunit I - Planctomyces maris DSM 8797 Length = 606 Score = 73.3 bits (172), Expect = 5e-12 Identities = 54/212 (25%), Positives = 81/212 (38%), Gaps = 14/212 (6%) Frame = +2 Query: 62 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 241 + Y + T HA N L+PL++GA D+AFP++N + + Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149 Query: 242 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 412 G G T YP L+ G + + + G SS Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209 Query: 413 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 580 +F +LP+ + + ITA + + DR T FF P+G Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269 Query: 581 -------GGDPILYQHLF*FFGHPEVYILILP 655 GG P+L+QHLF F+ HP VYI++LP Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLP 301 >UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Echinoida|Rep: Cytochrome c oxidase subunit I - Echinometra oblonga Length = 386 Score = 72.1 bits (169), Expect = 1e-11 Identities = 31/37 (83%), Positives = 33/37 (89%) Frame = +2 Query: 548 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658 N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPG Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPG 227 >UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I; n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O ubiquinol oxidase subunit I - Carsonella ruddii (strain PV) Length = 606 Score = 71.7 bits (168), Expect = 2e-11 Identities = 47/170 (27%), Positives = 73/170 (42%) Frame = +2 Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325 N ++PL +G+ D+AFP +N + F I+ A TG YPPLS Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178 Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505 VD +S+ ++GI + F+++ +F+ + Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238 Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 + + DR L+T F+ GG +LY +L +GHPEVYILILP Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILP 288 >UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit 1 - Munidopsis verrucosus Length = 154 Score = 70.9 bits (166), Expect = 3e-11 Identities = 39/83 (46%), Positives = 48/83 (57%) Frame = +2 Query: 299 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 478 PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131 Query: 479 TAFXXXXXXXXXAGAITILLTDR 547 T AGAIT+LLTDR Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154 Score = 35.1 bits (77), Expect = 1.7 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = +1 Query: 133 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 258 W IWKL P NK YKILT PL Y K+N Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69 >UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria bacterium (strain Ellin345) Length = 595 Score = 69.7 bits (163), Expect = 6e-11 Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 16/226 (7%) Frame = +2 Query: 32 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 211 G PG ++ + Y +++T H N +P+ +GA D+AFPR N + Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133 Query: 212 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 376 F + +G +G T Y LS+ A G + ++ + +A I+ Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193 Query: 377 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 556 S S ++P+ A IT+ A +L DR Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253 Query: 557 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGI 661 TSFF P+G GG +L+QHLF FFGHPEVYI ILP + Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAM 299 >UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha (Liverwort) Length = 434 Score = 69.7 bits (163), Expect = 6e-11 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Frame = +2 Query: 11 LLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 +LIR EL PG+ I G+ Q+YN ++TAHA N VP+++G+PD+ Sbjct: 37 VLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDM 96 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 292 AFPR+NNI F +VE G G+G TV Sbjct: 97 AFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132 >UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica (Candida lipolytica) Length = 457 Score = 67.7 bits (158), Expect = 3e-10 Identities = 42/106 (39%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Frame = +2 Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178 L +IR EL N GS L G+ Q +N ++TAHA N L+PL+LGA Sbjct: 37 LSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGAS 96 Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 316 D+AF R+NNI F +VE GAGTG TV SS + Sbjct: 97 DMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142 >UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Halobacteriaceae|Rep: Cytochrome c oxidase subunit I - Haloarcula marismortui (Halobacterium marismortui) Length = 854 Score = 66.9 bits (156), Expect = 4e-10 Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 13/232 (5%) Frame = +2 Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184 L LL R EL + G+ + YN V+ H N LVPL +GA D+ Sbjct: 43 LALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA-NYLVPLQIGADDL 101 Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--IAHRGRSVDLAIFSL 358 AFPR+N + + G T+Y PL++ I G + +L Sbjct: 102 AFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIPGEGLGATSVVLAL 161 Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538 + + +P+F ++ +T + A+ IL Sbjct: 162 IMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLFAFAALLAALMILA 221 Query: 539 TDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYILILPGI 661 +D L T++F D G +L+ HLF FFGHPEVYI+ P + Sbjct: 222 SDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIVFFPAL 273 >UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyveromyces thermotolerans|Rep: Putative DNA endonuclease - Kluyveromyces thermotolerans (Yeast) Length = 542 Score = 63.7 bits (148), Expect = 4e-09 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Frame = +2 Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175 A+ ++IR EL PG+ L G+ Q++N +V HA N L+PL++GA Sbjct: 31 AMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGA 90 Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 292 D++F R+NNI F +VE+GAGTG TV Sbjct: 91 SDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129 >UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium cryptum (strain JF-5) Length = 689 Score = 62.1 bits (144), Expect = 1e-08 Identities = 44/174 (25%), Positives = 71/174 (40%) Frame = +2 Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325 N +VPL +GA D+AFP +N + V + + G PL+ Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202 Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505 G VD ++++ + + + ++ +LP V T Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262 Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWY 667 A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP + Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGF 316 >UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase subunit I - Myrmarachne sp. G FSC-2006 Length = 129 Score = 59.3 bits (137), Expect = 9e-08 Identities = 28/41 (68%), Positives = 31/41 (75%) Frame = +2 Query: 257 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 379 +VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52 >UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase subunit I - Tetragona dorsalis ziegleri Length = 111 Score = 58.8 bits (136), Expect = 1e-07 Identities = 32/75 (42%), Positives = 42/75 (56%) Frame = +2 Query: 443 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 622 DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71 Query: 623 GHPEVYILILPGIWY 667 GH +V LIL W+ Sbjct: 72 GHTDVLFLIL--FWF 84 >UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; Endopterygota|Rep: Cytochrome c oxidase subunit I - Copitarsia incommoda Length = 150 Score = 53.2 bits (122), Expect = 6e-06 Identities = 25/36 (69%), Positives = 26/36 (72%) Frame = +1 Query: 547 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 654 K KYIIF S W F+STFILIFWT SLYFNFT Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFT 42 >UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I - Celatoblatta vulgaris Length = 134 Score = 48.0 bits (109), Expect = 2e-04 Identities = 25/51 (49%), Positives = 29/51 (56%) Frame = +1 Query: 463 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 615 M C +YS +TC WSYYN IN SKLKYI+F F+ST IL Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134 >UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit I - Pachymerium ferrugineum Length = 219 Score = 44.0 bits (99), Expect = 0.004 Identities = 34/123 (27%), Positives = 41/123 (33%) Frame = +1 Query: 190 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 369 P NK +KIL TPL Y N C K C + +NSLP Y T R +F T Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138 Query: 370 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 549 CM +YS + S+YNI K Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198 Query: 550 LKY 558 KY Sbjct: 199 PKY 201 >UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome oxidase; n=1; Acidithiobacillus ferrooxidans|Rep: Sub-unit I of an aa3-type cytochrome oxidase - Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans) Length = 627 Score = 42.7 bits (96), Expect = 0.008 Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 2/173 (1%) Frame = +2 Query: 152 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 331 L+PL+LG ++ FP++ + + G TG YPPL+ N G Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235 Query: 332 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 511 + + ++S S ++P+FV + A Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295 Query: 512 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIW 664 + L+D + F+ G P+ Y F F HPEVY+ ILP IW Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAIW 347 >UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I - Roseiflexus sp. RS-1 Length = 561 Score = 39.1 bits (87), Expect = 0.10 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Frame = +2 Query: 581 GGDPILYQHLF*FFGHPEVYILILPGI--WYNF 673 G DP+L + LF F GHP VY +LP WYNF Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAYISWYNF 256 >UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase subunit I - Eutetramorium sp. BLF m1 Length = 201 Score = 37.9 bits (84), Expect = 0.24 Identities = 16/31 (51%), Positives = 24/31 (77%) Frame = +2 Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHA 94 ++ +LIR EL GS++ +QIYNT+VT+HA Sbjct: 16 SMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46 Score = 37.1 bits (82), Expect = 0.41 Identities = 27/78 (34%), Positives = 35/78 (44%) Frame = +2 Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505 G L IFSL + S + D++ L ++ ITA Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183 Query: 506 XXXAGAITILLTDRNLNT 559 AGAIT+LLTDRN+NT Sbjct: 184 PVLAGAITMLLTDRNMNT 201 >UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon buchholtzi (Butterflyfish) Length = 184 Score = 36.3 bits (80), Expect = 0.72 Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 3/29 (10%) Frame = +2 Query: 617 FFGHPEVYILILPG---IWYNFSYYFTRK 694 FFGHPEVYILILPG I + +YY +K Sbjct: 2 FFGHPEVYILILPGFGMISHIVAYYSGKK 30 >UniRef50_A7D123 Cluster: Cytochrome-c oxidase; n=1; Halorubrum lacusprofundi ATCC 49239|Rep: Cytochrome-c oxidase - Halorubrum lacusprofundi ATCC 49239 Length = 597 Score = 33.1 bits (72), Expect = 6.7 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = +2 Query: 587 DPILYQHLF*FFGHPEVYILILPG--IWY 667 +P L + LF FFGHP VY ++P +WY Sbjct: 223 NPTLTRTLFWFFGHPVVYFWLMPAYLLWY 251 >UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Digenea|Rep: Cytochrome c oxidase subunit I - Echinostoma hortense Length = 154 Score = 32.7 bits (71), Expect = 8.8 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = +2 Query: 617 FFGHPEVYILILP 655 FFGHPEVY+LILP Sbjct: 1 FFGHPEVYVLILP 13 >UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; Plasmodium|Rep: Putative uncharacterized protein - Plasmodium falciparum (isolate 3D7) Length = 1420 Score = 32.7 bits (71), Expect = 8.8 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -2 Query: 546 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 424 +++NN +I S NNN N++ T TN + +N+I +N Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078 >UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; n=1; Candida albicans|Rep: Putative uncharacterized protein CLN3 - Candida albicans (Yeast) Length = 785 Score = 32.7 bits (71), Expect = 8.8 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = -2 Query: 600 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 463 Y++ +PP + +KN K S NN IA T ++NNN N+ +P H Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 502,999,346 Number of Sequences: 1657284 Number of extensions: 8958023 Number of successful extensions: 20729 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 19074 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 20444 length of database: 575,637,011 effective HSP length: 98 effective length of database: 413,223,179 effective search space used: 54958682807 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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