Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1064
(697 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 262 4e-69
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 257 2e-67
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 241 1e-62
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 236 3e-61
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 234 2e-60
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 232 7e-60
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 221 2e-56
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 218 9e-56
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 215 9e-55
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 210 2e-53
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 210 2e-53
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 209 6e-53
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 204 2e-51
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 199 6e-50
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 198 1e-49
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 196 4e-49
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 191 1e-47
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 189 5e-47
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 186 5e-46
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 178 9e-44
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 177 3e-43
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 177 3e-43
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 176 4e-43
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 173 3e-42
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 170 3e-41
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 169 7e-41
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 164 2e-39
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 160 3e-38
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 159 8e-38
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 158 1e-37
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 151 2e-35
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 149 5e-35
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 149 6e-35
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 139 5e-32
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 127 2e-28
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 123 5e-27
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 122 6e-27
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 122 8e-27
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 117 2e-25
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 111 2e-23
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 111 2e-23
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 110 4e-23
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 109 6e-23
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 109 6e-23
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 109 8e-23
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 109 8e-23
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 107 3e-22
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 107 3e-22
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 105 8e-22
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 105 1e-21
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 104 2e-21
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 103 6e-21
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 101 2e-20
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 100 7e-20
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 99 1e-19
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 98 2e-19
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 97 3e-19
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 97 3e-19
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 96 8e-19
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 95 2e-18
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 94 3e-18
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 92 1e-17
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 91 2e-17
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 91 3e-17
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 90 6e-17
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 88 2e-16
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 86 9e-16
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 85 2e-15
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 84 3e-15
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 83 6e-15
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 82 1e-14
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 82 1e-14
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 82 1e-14
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 82 1e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 4e-14
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 79 8e-14
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 78 2e-13
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 78 2e-13
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 75 1e-12
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 75 2e-12
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 74 4e-12
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 74 4e-12
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 74 4e-12
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 73 5e-12
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 72 1e-11
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 72 2e-11
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 3e-11
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 70 6e-11
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 70 6e-11
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 68 3e-10
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 67 4e-10
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 64 4e-09
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 62 1e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 9e-08
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 59 1e-07
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 53 6e-06
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 44 0.004
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 43 0.008
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 39 0.10
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 38 0.24
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 36 0.72
UniRef50_A7D123 Cluster: Cytochrome-c oxidase; n=1; Halorubrum l... 33 6.7
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 33 8.8
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 8.8
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ... 33 8.8
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 262 bits (643), Expect = 4e-69
Identities = 137/216 (63%), Positives = 146/216 (67%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
+L LLIR ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD
Sbjct: 5 SLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPD 64
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLH
Sbjct: 65 MAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLH 124
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAGISS SFDQ+PLF+ AVGITA AGAIT+LLT
Sbjct: 125 LAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLT 184
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 649
DRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 185 DRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 257 bits (629), Expect = 2e-67
Identities = 135/212 (63%), Positives = 144/212 (67%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
+L LLIRAELG PGSLIGDDQIYNTIVTAHA N LVPL+LGAPD
Sbjct: 29 SLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPD 88
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLH
Sbjct: 89 MAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLH 148
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAGISS SFDQ+PLFV AVGITAF AGAIT+LLT
Sbjct: 149 LAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLT 208
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 637
DRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 209 DRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 241 bits (590), Expect = 1e-62
Identities = 133/234 (56%), Positives = 148/234 (63%), Gaps = 3/234 (1%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
AL LLIRAELG PG+L+GDDQIYN IVTAHA N LVPL++GAPD
Sbjct: 33 ALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPD 92
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDLAIFSLH
Sbjct: 93 MAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLH 152
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAGISS S Q PLFV +V ITA A IT+LLT
Sbjct: 153 LAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLT 212
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694
DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG I + +YY +K
Sbjct: 213 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKK 266
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 236 bits (578), Expect = 3e-61
Identities = 129/234 (55%), Positives = 145/234 (61%), Gaps = 3/234 (1%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
AL LLIRAEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD
Sbjct: 32 ALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPD 91
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLH
Sbjct: 92 MAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLH 151
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAG+SS S Q PLFV AV +TA A IT+LLT
Sbjct: 152 LAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLT 211
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694
DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG I + +YY +K
Sbjct: 212 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKK 265
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 234 bits (572), Expect = 2e-60
Identities = 127/234 (54%), Positives = 145/234 (61%), Gaps = 3/234 (1%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
AL LLIRAEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD
Sbjct: 32 ALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPD 91
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLH
Sbjct: 92 MAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLH 151
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAG+SS + Q PLFV +V +TA A IT+LLT
Sbjct: 152 LAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLT 211
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694
DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG I + +YY +K
Sbjct: 212 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKK 265
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 232 bits (567), Expect = 7e-60
Identities = 126/234 (53%), Positives = 145/234 (61%), Gaps = 3/234 (1%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
AL LLIRAELG PG+L+G+D IYN IVTAHA N LVPL++GAPD
Sbjct: 32 ALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPD 91
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NN+ F +VE GAGTG TVYPPL+ N +H G SVDL IFSLH
Sbjct: 92 MAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLH 151
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAG+SS + Q PLFV +V ITA A IT+LLT
Sbjct: 152 LAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLT 211
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG---IWYNFSYYFTRK 694
DRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG I + +YY +K
Sbjct: 212 DRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKK 265
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 221 bits (539), Expect = 2e-56
Identities = 114/219 (52%), Positives = 136/219 (62%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
++ L+IR ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD
Sbjct: 16 SMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPD 75
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
++FPR+NN+ F + G GTG TVYPPLS + H G SVDL IFSLH
Sbjct: 76 MSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLH 135
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAG SS + D++ LF +V ITA AGAIT+LLT
Sbjct: 136 LAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLT 195
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
DRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 196 DRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPG 234
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 218 bits (533), Expect = 9e-56
Identities = 117/221 (52%), Positives = 134/221 (60%), Gaps = 2/221 (0%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
A +LIR EL PG L GD Q+YN I+TAHA N LVP+++GA
Sbjct: 30 AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
PD+AFPR+NNI F VE GAGTG TVYPPLS +H G SVDLAIFS
Sbjct: 90 PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFS 149
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LHL+GISS + +LPLFV A+ +TA AGAIT+L
Sbjct: 150 LHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITML 209
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
LTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PG
Sbjct: 210 LTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPG 250
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 215 bits (525), Expect = 9e-55
Identities = 112/218 (51%), Positives = 134/218 (61%), Gaps = 2/218 (0%)
Frame = +2
Query: 11 LLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
+LIR EL PG I G+ Q+YN ++TAHA N VP+++GAPD+
Sbjct: 36 VLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDM 95
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
AFPR+NNI F +VE G+GTG TVYPPLS +H G +VDLAIFSLHL
Sbjct: 96 AFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHL 155
Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
+G+SS + +LPLFV +V +TAF AGAIT+LLTD
Sbjct: 156 SGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTD 215
Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
RN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 216 RNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 253
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 210 bits (514), Expect = 2e-53
Identities = 117/202 (57%), Positives = 135/202 (66%)
Frame = -2
Query: 612 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 433
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 432 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 253
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 252 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 73
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 72 L*I*SSPINDPGFPNSARIKSL 7
L I S PI PG PNSARIKSL
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSL 200
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 210 bits (513), Expect = 2e-53
Identities = 110/220 (50%), Positives = 135/220 (61%), Gaps = 2/220 (0%)
Frame = +2
Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
+ +LIR EL P + L+G+ QIYN ++TAHA N LVP+++G+P
Sbjct: 39 MSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSP 98
Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
D+AFPR+NNI F +VE G GTG TVYPPLSS +H G +VDLAIFSL
Sbjct: 99 DMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSL 158
Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
H++G SS S ++PLFV ++ +TAF AGAIT+LL
Sbjct: 159 HISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLL 218
Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
TDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPG
Sbjct: 219 TDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPG 258
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 209 bits (510), Expect = 6e-53
Identities = 111/204 (54%), Positives = 124/204 (60%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
AL LLIR ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD
Sbjct: 15 ALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPD 74
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NN+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLH
Sbjct: 75 MAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLH 134
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAG+SS + + LFV +V ITA AGAIT+LLT
Sbjct: 135 LAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLT 194
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF 613
DRN NTSFFDPAGGGDPILYQHLF
Sbjct: 195 DRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 204 bits (497), Expect = 2e-51
Identities = 107/208 (51%), Positives = 126/208 (60%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
A +LIR EL +PGS++GDD +YN IVTAHA N VPL++GAPD
Sbjct: 33 AFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPD 92
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NNI F +VE GAGTG TVYPPL+S AH G SVD+AIFSLH
Sbjct: 93 MAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLH 152
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAG+SS + ++PLFV +V ITA AGAIT+LLT
Sbjct: 153 LAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLT 212
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFG 625
DR NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 213 DRYFNTTFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 199 bits (485), Expect = 6e-50
Identities = 108/221 (48%), Positives = 130/221 (58%), Gaps = 2/221 (0%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
A+ L+IR EL PGS L G+ Q++N +V HA N L+PL++GA
Sbjct: 31 AMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGA 90
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
D AFPRINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+
Sbjct: 91 TDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFA 150
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LHL ISS + +LPLFV ++ ITAF + IT+L
Sbjct: 151 LHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITML 210
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
L DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PG
Sbjct: 211 LLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPG 251
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 198 bits (482), Expect = 1e-49
Identities = 108/220 (49%), Positives = 126/220 (57%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 ALRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
A +LIR EL PG I D+Q+YN+I+TAHA N L+PL LG P
Sbjct: 32 AFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGP 91
Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
D+ FPR+NNI + +ENG GTG T+YPPLS +H G SVDLAIF L
Sbjct: 92 DMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGL 151
Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
HL+GISS +L LF AV ITA AG IT++L
Sbjct: 152 HLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVL 211
Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
TDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PG
Sbjct: 212 TDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPG 251
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 196 bits (478), Expect = 4e-49
Identities = 106/221 (47%), Positives = 129/221 (58%), Gaps = 2/221 (0%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
A+ ++IR EL PGS L G+ Q++N +V HA N ++PL++GA
Sbjct: 31 AMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGA 90
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
D++FPRIN+I F +VE+GAGTG TVYPPLSS AH G SVDLAIFS
Sbjct: 91 TDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFS 150
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LHL ISS S ++PLFV A+ ITAF + IT+L
Sbjct: 151 LHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITML 210
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
L DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PG
Sbjct: 211 LMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPG 251
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 191 bits (466), Expect = 1e-47
Identities = 102/220 (46%), Positives = 125/220 (56%), Gaps = 1/220 (0%)
Frame = +2
Query: 2 ALRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
A +LIR EL PG I D+Q+YN+I+T+H N L+P+++G P
Sbjct: 58 AFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGP 117
Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
D+AFPR+NN+ + I+ENG GTG T+YPPLS +H VDL IF L
Sbjct: 118 DMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGL 177
Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
HL+GISS +L LF AV ITA A AIT+LL
Sbjct: 178 HLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLL 237
Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
TDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+PG
Sbjct: 238 TDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPG 277
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 189 bits (461), Expect = 5e-47
Identities = 104/206 (50%), Positives = 120/206 (58%), Gaps = 2/206 (0%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
A +LIR EL PG L GD Q+YN I+TAHA N LVP+++GA
Sbjct: 30 AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
PD+AFPR+NNI F VE GAGTG TVYPPLS +H G SVDLAIFS
Sbjct: 90 PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFS 149
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LHL+GISS + +LPLFV A+ +TA AGAIT+L
Sbjct: 150 LHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITML 209
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF 613
LTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 210 LTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 186 bits (453), Expect = 5e-46
Identities = 101/220 (45%), Positives = 117/220 (53%), Gaps = 2/220 (0%)
Frame = +2
Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
L +L+R EL PG L G+ YN I T H N VP+++GAP
Sbjct: 35 LSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAP 94
Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
D++FPR+NN F E G GTG TVYPPLSS +H G SVDL IFS
Sbjct: 95 DMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSF 154
Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
HL GI S LPLFV +V +T+F A AIT+LL
Sbjct: 155 HLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLL 214
Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPG
Sbjct: 215 FDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPG 254
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 178 bits (434), Expect = 9e-44
Identities = 102/229 (44%), Positives = 128/229 (55%), Gaps = 2/229 (0%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
A+ L+IR EL PGS L G+ Q++N +V HA N L+PL++GA
Sbjct: 31 AMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGA 90
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
D AFPRINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+
Sbjct: 91 TDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFA 150
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LHL ISS + +LPLFV ++ ITAF + IT+L
Sbjct: 151 LHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITML 210
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWYNFSYY 682
L DRN NTSFF+ +GGGDPILY+HLF FFG I++L + YN ++
Sbjct: 211 LLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML--MMYNDMHF 257
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 177 bits (430), Expect = 3e-43
Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
+L +L+R EL NP L+ + Q++N ++TAHA N LVPL +G+
Sbjct: 48 SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+
Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LHL+G+SS + +LPLFV +V ITA A +T+L
Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
L DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P
Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVP 267
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 177 bits (430), Expect = 3e-43
Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +2
Query: 2 ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
+L +L+R EL NP L+ + Q++N ++TAHA N LVPL +G+
Sbjct: 48 SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+
Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LHL+G+SS + +LPLFV +V ITA A +T+L
Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
L DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P
Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVP 267
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 176 bits (429), Expect = 4e-43
Identities = 98/191 (51%), Positives = 111/191 (58%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
AL LLIRAEL PG+L+GDDQIYN IVTAHA N L+PL++GAPD
Sbjct: 21 ALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPD 80
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NN+ F +E GAGTG TVYPPL+ N+AH G SVDL IFSLH
Sbjct: 81 MAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLH 140
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
LAGISS S Q PLFV AV ITA A IT+LLT
Sbjct: 141 LAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLT 200
Query: 542 DRNLNTSFFDP 574
DRNLNT+FFDP
Sbjct: 201 DRNLNTTFFDP 211
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 173 bits (422), Expect = 3e-42
Identities = 100/224 (44%), Positives = 124/224 (55%), Gaps = 5/224 (2%)
Frame = +2
Query: 2 ALRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
A +LIR EL PG I ++Q+YN+I+TAHA N L+PL++G P
Sbjct: 60 AFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGP 119
Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLA 346
D+AFPR+NNI F I+E G GTG T+ YPPLS +H G SVDLA
Sbjct: 120 DMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLA 179
Query: 347 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 526
IF+LHL+G+SS +L LF A + I
Sbjct: 180 IFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWATWSSRSRYFL-------GI 232
Query: 527 TILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
T++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PG
Sbjct: 233 TMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPG 276
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 170 bits (413), Expect = 3e-41
Identities = 94/210 (44%), Positives = 118/210 (56%), Gaps = 2/210 (0%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
A+ L+IR EL PG L G++Q++N +V HA N ++PL++GA
Sbjct: 31 AMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGA 90
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
D AFPRINNI F +VE+GAGTG TVYPPL+S AH G SVDLAIF+
Sbjct: 91 TDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFA 150
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LH+ ISS + +LPLFV A+ ITA + +T+L
Sbjct: 151 LHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTML 210
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFG 625
L DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 211 LLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 169 bits (410), Expect = 7e-41
Identities = 86/214 (40%), Positives = 119/214 (55%), Gaps = 2/214 (0%)
Frame = +2
Query: 20 RAELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 193
+A LG L G D ++N ++T H N +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 194 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 373
R+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261
Query: 374 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 553
SS + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321
Query: 554 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP
Sbjct: 322 GTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILP 355
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 164 bits (398), Expect = 2e-39
Identities = 90/202 (44%), Positives = 113/202 (55%), Gaps = 4/202 (1%)
Frame = +2
Query: 65 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 244
++N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152
Query: 245 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 412
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211
Query: 413 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 592
+ ++PLFV +V +TAF A AIT+LLTDRN T+F+D AGGGDP
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDP 271
Query: 593 ILYQHLF*FFGHPEVYILILPG 658
LYQHLF FFGHPEVYI+ILPG
Sbjct: 272 ELYQHLFWFFGHPEVYIMILPG 293
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 160 bits (389), Expect = 3e-38
Identities = 92/218 (42%), Positives = 117/218 (53%), Gaps = 2/218 (0%)
Frame = +2
Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
L +IR EL N GS L G+ Q +N ++TAHA N L+PL+LGA
Sbjct: 37 LSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGAS 96
Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
D+AF R+NNI F +VE GAGTG TVY PL+ +H G +VDLAIFSL
Sbjct: 97 DMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSL 156
Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
HL+G SS ++ +PLF AV TA A +T+ +
Sbjct: 157 HLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGI 216
Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 652
DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 217 FDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 159 bits (385), Expect = 8e-38
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +2
Query: 161 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 340
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 341 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 520
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 521 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 628
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 158 bits (384), Expect = 1e-37
Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 4/221 (1%)
Frame = +2
Query: 2 ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
+L +L+R EL NP L+ + Q++N ++TAHA N LVPL +G+
Sbjct: 48 SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+
Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LHL+G+SS + +LPLFV +V ITA A +T+L
Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 652
L DRN NTSFF +GGGDP+LY+H+F FFG P + I+I+
Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 151 bits (366), Expect = 2e-35
Identities = 88/229 (38%), Positives = 124/229 (54%), Gaps = 2/229 (0%)
Frame = +2
Query: 2 ALRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
+L +L+R EL NP L+ + Q++N ++TAHA N LVPL +G+
Sbjct: 48 SLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGS 107
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
D AFPRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+
Sbjct: 108 NDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFA 167
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
LHL+G+SS + +LPLFV +V ITA A +T+L
Sbjct: 168 LHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTML 227
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWYNFSYY 682
L DRN NTSFF +GGGDP+LY+H+ F+ +P +LIL IW Y
Sbjct: 228 LMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP---VLIL--IWLTSGIY 269
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 149 bits (362), Expect = 5e-35
Identities = 82/217 (37%), Positives = 106/217 (48%), Gaps = 2/217 (0%)
Frame = +2
Query: 11 LLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
L IR EL G L GD Q YN ++T+H N +P++ G PD+
Sbjct: 36 LFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDM 95
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
FPR+NN+ F + E G G G T+YP L H + D +F++HL
Sbjct: 96 VFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHL 155
Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
GISS SF LF+ A ITA AG +T++L D
Sbjct: 156 LGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCD 215
Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
RN NTSF+D GGGD IL+QH+F FFGHPEVYI++LP
Sbjct: 216 RNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLP 252
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 149 bits (361), Expect = 6e-35
Identities = 81/219 (36%), Positives = 109/219 (49%), Gaps = 2/219 (0%)
Frame = +2
Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
L +LIR EL +PG G Q+YN+++T H N ++PL+LGAP
Sbjct: 42 LSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAP 101
Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
++AFPR+N + F + G G+ T YPPLS S+D I L
Sbjct: 102 EMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGL 160
Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
H GI S + DQ+ +FV +T+F AG++ LL
Sbjct: 161 HTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLL 220
Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
DRN NTSF+D GG+P+LYQHLF FFGHPEVY++ILP
Sbjct: 221 LDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILP 259
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 139 bits (337), Expect = 5e-32
Identities = 77/214 (35%), Positives = 109/214 (50%), Gaps = 1/214 (0%)
Frame = +2
Query: 17 IRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 196
+R EL +PG + +Y++I+T HA N +PL++ D++ PR
Sbjct: 39 MRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPR 98
Query: 197 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 376
+NN+ + G G G T+YPPLS++ G +DLA+FSLH+AG+S
Sbjct: 99 LNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMS 158
Query: 377 SXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 553
S F L P+ + + T+ A +T+LL DR+
Sbjct: 159 SIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHF 218
Query: 554 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
+TSF+ P GGGDPIL+QHLF FFGHPEVYILILP
Sbjct: 219 STSFYYPEGGGDPILWQHLFWFFGHPEVYILILP 252
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 127 bits (307), Expect = 2e-28
Identities = 76/175 (43%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
A +LIR EL PG L GD Q+YN I+TAHA N LVP+++GA
Sbjct: 30 AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
PD+AFPR+NNI F VE GAGTG TVYPPLS +H G SVDLAIFS
Sbjct: 90 PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFS 149
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 520
LHL+GISS + +LPLFV A+ +TA AG
Sbjct: 150 LHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 123 bits (296), Expect = 5e-27
Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 4/221 (1%)
Frame = +2
Query: 5 LRLLIRAELGNPG-SLIGDDQI--YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
L +++R EL + +I + + YN I T H N +P++ G+
Sbjct: 35 LSVILRTELYSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGS 94
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIF 352
P++A+PRIN+I E G GTG T+YPPLS+++ +VD+ IF
Sbjct: 95 PELAYPRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIF 154
Query: 353 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 532
L ++G++S + L + ++ IT+ G + +
Sbjct: 155 GLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLM 214
Query: 533 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
LL+D + NT FFDP GDPILYQHLF FFGHPEVYILILP
Sbjct: 215 LLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILP 255
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 122 bits (295), Expect = 6e-27
Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 3/221 (1%)
Frame = +2
Query: 5 LRLLIRAELGNPG-SLIGDD--QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
+ +LIR EL G +I D +IYN + T H N L P++LG
Sbjct: 38 MSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGY 97
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 355
D+ +PR+N +E G+GTG T+YPPLS+++++ G +D IF
Sbjct: 98 CDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFG 155
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
L AGI+S D++ ++ +T+F ++
Sbjct: 156 LLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMV 215
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+ILPG
Sbjct: 216 FLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILPG 256
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 122 bits (294), Expect = 8e-27
Identities = 80/218 (36%), Positives = 101/218 (46%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
L LLIR L +P + +YN +VT H N +P+ L D+
Sbjct: 131 LSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDL 190
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
PR+N++ G G G T+YPPLS G VD +FSLHL
Sbjct: 191 LLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHL 247
Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
AG+SS S + V A T+ A IT+LL D
Sbjct: 248 AGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSLPVLASGITMLLFD 302
Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
RN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPG
Sbjct: 303 RNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPG 340
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 117 bits (282), Expect = 2e-25
Identities = 76/215 (35%), Positives = 102/215 (47%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
LL R +L P L D +YN VT H N L+P PD+ F
Sbjct: 32 LLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLF 89
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
PR+N + F ++ + A G T YPPLSS SV+ ++FSLHLAG
Sbjct: 90 PRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAG 140
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
I+S + L LF ++ + + A IT++LTD++
Sbjct: 141 IASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKH 198
Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
L T F+D GGDP+LYQHLF FFGHPEVY++ILP
Sbjct: 199 LGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILP 233
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 111 bits (267), Expect = 2e-23
Identities = 72/217 (33%), Positives = 96/217 (44%), Gaps = 8/217 (3%)
Frame = +2
Query: 68 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 247
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 248 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 424
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 425 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGD 589
++ +LPL + + +TA A +LL DR+ T FF GGGD
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265
Query: 590 PILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
PIL+QHLF FGHPEVYI+ILP GI + +F RK
Sbjct: 266 PILWQHLFWIFGHPEVYIMILPAWGILGDVLSFFARK 302
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 111 bits (267), Expect = 2e-23
Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 6/223 (2%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLI----GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 172
+ +LIR EL G I + IYN +T H N L+P+++G
Sbjct: 39 ISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIG 98
Query: 173 APDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAHR-GRSVDLA 346
+++ PR+N I F ++ +G T+YPPLS+ A G ++DL+
Sbjct: 99 TSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLS 158
Query: 347 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 526
+ +H+ GISS +F + ++ ++ +T+ AI
Sbjct: 159 LLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAI 218
Query: 527 TILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
T LL DRN+N++ +D G DP+LYQHLF FFGHPEVY++ILP
Sbjct: 219 TGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILP 259
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 110 bits (264), Expect = 4e-23
Identities = 80/223 (35%), Positives = 107/223 (47%), Gaps = 8/223 (3%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
+L+R EL +PG + + YN+++T+H N L+PL++GA D+AF
Sbjct: 117 VLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAF 175
Query: 191 PRINNIRFXXXXXXXXXXXXXX--IVEN-GAGTG*TVYPPLS-----SNIAHRGRSVDLA 346
PRIN I F I E A TG T+Y PLS N A+ G VDL
Sbjct: 176 PRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLM 233
Query: 347 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 526
+ LHL+G+S+ S+ L +F + + AI
Sbjct: 234 LLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAI 293
Query: 527 TILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
+LL DRN TSFF AG G IL+QHLF FFGHPEVYI++LP
Sbjct: 294 MMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLP 334
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 109 bits (262), Expect = 6e-23
Identities = 72/216 (33%), Positives = 97/216 (44%), Gaps = 1/216 (0%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
LLIR EL PG I D YN T H N ++PL+LGA D+AF
Sbjct: 65 LLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAF 124
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
PR+N + ++ G TG T Y P S AH +V +F + G
Sbjct: 125 PRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIG 180
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
SS ++ ++PLFV A+ T+ G + +L+T N
Sbjct: 181 FSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATS-CIQVLATPVIGLLLVLVTVEN 239
Query: 551 L-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
L FDPA GGDP+L+QHLF F+ HP VYI++LP
Sbjct: 240 LFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLP 275
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 109 bits (262), Expect = 6e-23
Identities = 69/216 (31%), Positives = 95/216 (43%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
LL+R +L P + +++N + T H N VPL++GA D+AF
Sbjct: 55 LLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIGARDVAF 113
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
PR+N+ F + + G Y PLSS + VD I L + G
Sbjct: 114 PRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWIIGLLIMG 173
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
I S S ++PLFV + + A A+ +LL DR
Sbjct: 174 IGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAMLLIDRW 233
Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
L ++FFDP GG +L+QH F FGHPEVYILILPG
Sbjct: 234 LGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPG 269
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 109 bits (261), Expect = 8e-23
Identities = 72/220 (32%), Positives = 99/220 (45%), Gaps = 1/220 (0%)
Frame = +2
Query: 5 LRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
L LL+R +L P + IG D+ YN I T H LVPL++G
Sbjct: 50 LALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVGTRH 107
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
IAFPR+N + V+ G G Y PLS G+ D+ +
Sbjct: 108 IAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMIT 167
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
+S+ S D++PLFV ++ +T+F A T L+
Sbjct: 168 FTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLIL 227
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP +
Sbjct: 228 DRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAV 267
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 109 bits (261), Expect = 8e-23
Identities = 71/235 (30%), Positives = 103/235 (43%), Gaps = 5/235 (2%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
L +++R EL P + + D +YN + T H N L+P ++GAPD+
Sbjct: 57 LAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDM 115
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFS 355
AFP++N F G A +G YPP+S + + H L I +
Sbjct: 116 AFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILA 175
Query: 356 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 535
+ L+GISS F ++P+FV G +L
Sbjct: 176 VALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVML 235
Query: 536 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
L D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP GI+ + RK
Sbjct: 236 LFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFSELFPVYARK 290
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 107 bits (257), Expect = 3e-22
Identities = 65/206 (31%), Positives = 94/206 (45%)
Frame = +2
Query: 38 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 217
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 218 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 397
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 398 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 577
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 578 GGGDPILYQHLF*FFGHPEVYILILP 655
GGDP++YQ++F F+ HP VY+ +LP
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLP 205
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 107 bits (256), Expect = 3e-22
Identities = 67/217 (30%), Positives = 96/217 (44%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
LLIR EL PG I D YN + T H N L+P+++GA D+AF
Sbjct: 58 LLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAF 117
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
P++N + F +V+ GA TG T Y P S+ + V L F L G
Sbjct: 118 PKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---G 173
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
SS + +LPLFV ++ T+ ++ ++ +
Sbjct: 174 FSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHA 233
Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
FDPA GGDP+L+QH F F+ HP VYI++LP +
Sbjct: 234 FGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAM 270
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 105 bits (253), Expect = 8e-22
Identities = 74/230 (32%), Positives = 98/230 (42%), Gaps = 2/230 (0%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
LL+R +LG P + +YN + T H N +VPL++GA D+AF
Sbjct: 54 LLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMIGARDMAF 112
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
PR+N + V G Y PL+ VD I + L G
Sbjct: 113 PRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWIVGIGLTG 172
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
++S + +++PLFV + AF A LL DR+
Sbjct: 173 VASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRH 232
Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
T FF P GGD +L+QHLF FFGHPEVYILILP GI F+RK
Sbjct: 233 FGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIISEVLPTFSRK 282
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 105 bits (252), Expect = 1e-21
Identities = 70/213 (32%), Positives = 92/213 (43%)
Frame = +2
Query: 17 IRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 196
+R EL P ++YN ++T H N L+PL++G D+AFPR
Sbjct: 52 MRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPR 110
Query: 197 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 376
+N + F V G T YPPLS G +L I SL L G S
Sbjct: 111 LNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTS 167
Query: 377 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 556
S +PLF A+ T+ A A+ +L D
Sbjct: 168 SILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAG 227
Query: 557 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
TSFF+P GGGDP++YQHLF F+ HP VYI+ILP
Sbjct: 228 TSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILP 260
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 104 bits (250), Expect = 2e-21
Identities = 68/217 (31%), Positives = 98/217 (45%), Gaps = 2/217 (0%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
LL+R EL + +YN ++T+H N +PL++ A D+AF
Sbjct: 91 LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
PRIN I F ++ A T T+Y PLS ++ +VD+ + LHL
Sbjct: 150 PRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHL 207
Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
G+S+ + L +F + + A+ +LL D
Sbjct: 208 TGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLD 267
Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
RN T+FF AGG DPI +QHLF FFGHPEVY+L+LP
Sbjct: 268 RNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLP 303
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 103 bits (246), Expect = 6e-21
Identities = 73/233 (31%), Positives = 100/233 (42%), Gaps = 3/233 (1%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
+ LLIRAEL PG ++ +N + T H N ++PL +GAPD+
Sbjct: 59 MALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIGAPDV 117
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAIFSLH 361
AFPR+N F + GA G T+Y PLS I G D+ I +
Sbjct: 118 AFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWIVGVG 177
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
GI S + ++P+F + + + A +L
Sbjct: 178 ATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAALGVLY 237
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
DR L +DPA GG +L+QHLF FFGHPEVY+L LP GI F+RK
Sbjct: 238 DRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVSEIIPVFSRK 289
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 101 bits (241), Expect = 2e-20
Identities = 55/102 (53%), Positives = 63/102 (61%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
AL LLIRAELG PG+L+GDDQ N IVTAHA N LVPL++GAPD
Sbjct: 33 ALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPD 92
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 307
+AFPR+NN+ F VE GAGTG TVYPPL+
Sbjct: 93 MAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 99.5 bits (237), Expect = 7e-20
Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 2/222 (0%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
+L LL R +L P S Y VT H N +VPL +GA D
Sbjct: 41 SLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQIGARD 99
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
+AFPR+N + + E+GA G T+Y PL++ I G +DLA ++
Sbjct: 100 LAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLAALAI 159
Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
L +S + ++P+F ++ T +LL
Sbjct: 160 FLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGGALLL 219
Query: 539 TDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P +
Sbjct: 220 LDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPAL 259
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 98.7 bits (235), Expect = 1e-19
Identities = 76/234 (32%), Positives = 104/234 (44%), Gaps = 3/234 (1%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
AL LLIRAEL PG+ I D +N + T H N VP+++
Sbjct: 40 ALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMVRYK 98
Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 358
D+A+P++N I F + T PP S I+ G + D+ IF L
Sbjct: 99 DMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWIFGL 152
Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
+ GISS S Q+PL + ++ A A+ +LL
Sbjct: 153 KILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALLMLL 212
Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
TDR + FF+PA GGDPI Y HLF F HPEVY+L++P G+ Y F+RK
Sbjct: 213 TDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEMVPRFSRK 266
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 97.9 bits (233), Expect = 2e-19
Identities = 67/231 (29%), Positives = 98/231 (42%), Gaps = 3/231 (1%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
LLIR +L P + + YN I+T H N +VPL+LGA D+A
Sbjct: 47 LLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVAL 106
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 367
PR+N + GA G T Y P S A VD + ++ L
Sbjct: 107 PRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLL 163
Query: 368 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 547
G SS S ++P++V +V + A ++L +R
Sbjct: 164 GFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLER 223
Query: 548 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRK 694
+ S+F+PA GGDP+L+Q F F+ HP VY+++LP GI + F RK
Sbjct: 224 KIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILAEVASTFARK 274
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 97.5 bits (232), Expect = 3e-19
Identities = 67/231 (29%), Positives = 96/231 (41%), Gaps = 2/231 (0%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
L++RA+L P + D YN I T H N +VPL +GA D+AF
Sbjct: 76 LMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAF 134
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
P +NN+ F ++ G T Y PL+SN G + + L +AG
Sbjct: 135 PYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAG 194
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
I + + ++P+F IT A+ +L DR
Sbjct: 195 IGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRL 254
Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRKR 697
FF GG P+L+ +LF +GHPEVYI+ILP GI+ F RK+
Sbjct: 255 FGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIISSFARKQ 305
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 97.5 bits (232), Expect = 3e-19
Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 2/231 (0%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
+ IR +L P + Q YN ++T H N +VPL +GA D++F
Sbjct: 47 MFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSF 105
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
P +N + F + G T Y LS + +G +D + L ++G
Sbjct: 106 PFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFVLGLQISG 163
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
+ + ++ +LPLF + + + +++ DR
Sbjct: 164 LGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRL 223
Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSYYFTRKR 697
T+FF+P GG+ ++++HLF FGHPEVYILILP GI+ F RKR
Sbjct: 224 FGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFSEVIPVFARKR 274
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 95.9 bits (228), Expect = 8e-19
Identities = 55/126 (43%), Positives = 67/126 (53%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
+L L+IR ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD
Sbjct: 16 SLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPD 75
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+NN+ F + G + PL G SVDLAIF LH
Sbjct: 76 MAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLH 133
Query: 362 LAGISS 379
LAG+SS
Sbjct: 134 LAGVSS 139
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 94.7 bits (225), Expect = 2e-18
Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Frame = +2
Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 322
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 323 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 502
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 503 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP +
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAM 261
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 94.3 bits (224), Expect = 3e-18
Identities = 66/219 (30%), Positives = 95/219 (43%), Gaps = 2/219 (0%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
+ +LIR EL G I DD +YNT + H N +PL++GA D
Sbjct: 35 MAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKD 94
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+AFPR+N + + + T YPP S I H + FS+
Sbjct: 95 VAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVL 151
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILL 538
L G +S +++L +FV A + AF G A+T+L
Sbjct: 152 LLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLT 210
Query: 539 TDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP
Sbjct: 211 FDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLP 249
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 91.9 bits (218), Expect = 1e-17
Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 15/215 (6%)
Frame = +2
Query: 62 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 241
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 242 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 409
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 410 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 574
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265
Query: 575 ------AGGGDPILYQHLF*FFGHPEVYILILPGI 661
AGGG P+L+QHLF F+ HP VYI+ILP +
Sbjct: 266 NNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAM 300
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 91.1 bits (216), Expect = 2e-17
Identities = 61/217 (28%), Positives = 88/217 (40%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
L +LIRA+L P S + YN + T H L+P +LG+ D+
Sbjct: 50 LAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDL 108
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
AFPR+ F + +G +YPPLSS + G + D + +
Sbjct: 109 AFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITF 168
Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
IS+ S ++P+F +TA +L +
Sbjct: 169 VEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSILLELE 228
Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
R + FF A GGD +L+QHLF FGHPEVYI+ LP
Sbjct: 229 RAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLP 265
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 90.6 bits (215), Expect = 3e-17
Identities = 60/215 (27%), Positives = 89/215 (41%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
LL+R +L P + + YN + T H L+PL++GA D+ F
Sbjct: 78 LLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMIGARDLVF 136
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
PR+ + + + G +Y PLS++ G S D + + LA
Sbjct: 137 PRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWLIGITLAE 196
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
I+S S ++P+ + + TAF +L +R
Sbjct: 197 IASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSILLEAERL 256
Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
L FFD GGDP+L+QHLF FGHPEVYI+ LP
Sbjct: 257 LGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLP 291
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 89.8 bits (213), Expect = 6e-17
Identities = 61/219 (27%), Positives = 90/219 (41%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
L LL+R +L P + D + YN + + H ++PL+LG D+
Sbjct: 57 LALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDM 115
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
FPR+N + ++ G YPPL+ G +D +
Sbjct: 116 TFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTF 175
Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
IS+ S +++P+FV AV + +F A +L D
Sbjct: 176 MEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALD 235
Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
R FF A GDPIL+QHLF FFGHPEVYI+ +P +
Sbjct: 236 RMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPAL 273
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 87.8 bits (208), Expect = 2e-16
Identities = 70/203 (34%), Positives = 82/203 (40%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
L R L G +IG QI VTA A L PL +GAP +A
Sbjct: 25 LXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAX 84
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
PR+ N+ F + G G VYPP SS +AH +VDL IF LHLAG
Sbjct: 85 PRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAG 144
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
ISS ++ LF A AIT+L R
Sbjct: 145 ISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRX 204
Query: 551 LNTSFFDPAGGGDPILYQHLF*F 619
N SFF P G P + F F
Sbjct: 205 XNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 85.8 bits (203), Expect = 9e-16
Identities = 58/217 (26%), Positives = 89/217 (41%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
L +LIRA+L +P S + Y + T H L+P +LG+ D+
Sbjct: 50 LAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDL 108
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
A+PR++ F + +G +YPPL+S + G + D + +
Sbjct: 109 AYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITF 168
Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
IS+ S D++P++ +TA +L +
Sbjct: 169 VEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSILLELE 228
Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
R FF A GGD +L+QHLF FGHPEVYI+ LP
Sbjct: 229 RAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLP 265
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 85.0 bits (201), Expect = 2e-15
Identities = 71/232 (30%), Positives = 96/232 (41%), Gaps = 15/232 (6%)
Frame = +2
Query: 5 LRLLIRAELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
L L+R +LG PG+ D Y +T H N L+PL++GA D
Sbjct: 59 LSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARD 118
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIF 352
+ FP +N + + V G G G T+YPP + S + + L +
Sbjct: 119 MVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLS 178
Query: 353 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAIT 529
SL L I + +LPL V + T G++
Sbjct: 179 SLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVM 238
Query: 530 ILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILP 655
+LL DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP
Sbjct: 239 LLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALP 289
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 84.2 bits (199), Expect = 3e-15
Identities = 59/217 (27%), Positives = 90/217 (41%)
Frame = +2
Query: 11 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 190
L++R +L P + + Y+++ T H N L PL+LG+ D+AF
Sbjct: 72 LVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLMLGSRDMAF 130
Query: 191 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 370
PR+ + + G Y PL+S G ++D+ + L G
Sbjct: 131 PRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYGLGMILLG 190
Query: 371 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 550
IS+ S D+LP+ V + + A +L DRN
Sbjct: 191 ISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFLLLWLDRN 250
Query: 551 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
T FFD A GG P+L+QHLF F HP VY+++LP +
Sbjct: 251 AGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAM 287
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 83.0 bits (196), Expect = 6e-15
Identities = 61/218 (27%), Positives = 87/218 (39%), Gaps = 1/218 (0%)
Frame = +2
Query: 5 LRLLIRAELGNP-GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 181
L L++R +L P L+G D YN I T H L+P +L A D
Sbjct: 60 LGLIMRTQLAVPENDLVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARD 117
Query: 182 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
+ FPR++ + G +YPPL+ G + D + +
Sbjct: 118 LPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIG 177
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
IS+ S ++P+F A+ I A A +L
Sbjct: 178 FIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATMLLEI 237
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
+R+ FF GGDP+L+QHLF FFGHPEVYI+ LP
Sbjct: 238 ERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLP 275
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 82.2 bits (194), Expect = 1e-14
Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 4/220 (1%)
Frame = +2
Query: 14 LIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 193
++R +L PG + + +N + T HA N +PL++GA D+AFP
Sbjct: 53 IMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMIGARDVAFP 111
Query: 194 RINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSVDLAIFSLH 361
R+N + ++ G G Y L+S G D L
Sbjct: 112 RLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGPDFWTLGLL 171
Query: 362 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLT 541
L GI + + ++P+FV +T+ A+ +L+
Sbjct: 172 LLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVTVALIMLMF 231
Query: 542 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
DR +FF+ GG + YQHLF FGHPEVYILILP +
Sbjct: 232 DRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAM 271
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 81.8 bits (193), Expect = 1e-14
Identities = 57/186 (30%), Positives = 81/186 (43%), Gaps = 2/186 (1%)
Frame = +2
Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSY 679
GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP GI+
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFSEVVS 304
Query: 680 YFTRKR 697
F KR
Sbjct: 305 TFAGKR 310
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 81.8 bits (193), Expect = 1e-14
Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 14/233 (6%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
LR ++ + G L + + Y +VT H N L+PL +GA D+
Sbjct: 83 LRPILGGWITEAGKL--EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDM 140
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIF 352
A +N + + +E G +G +YPPLS+ ++ G + + +
Sbjct: 141 ASGFMNMLSYWFFFGSSVIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLI 200
Query: 353 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 532
S+ L IS SF +LPL + A ITA A +
Sbjct: 201 SMALFIISVLLGGINYITTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALL 260
Query: 533 LLTDRNLNTSFFDP----AG------GGDPILYQHLF*FFGHPEVYILILPGI 661
L+ DR+L TSFF AG GG P+L+QHLF F GHPEVYI+++P +
Sbjct: 261 LIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPAL 313
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 81.8 bits (193), Expect = 1e-14
Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 2/186 (1%)
Frame = +2
Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIWYNFSY 679
A+ +L DR L+ F GG+P++Y +LF +GHPEVYILILP G++ +
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFSEVTS 303
Query: 680 YFTRKR 697
F KR
Sbjct: 304 TFAGKR 309
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 4e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +2
Query: 161 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 340
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 341 LAIFS 355
LAI+S
Sbjct: 61 LAIYS 65
Score = 59.7 bits (138), Expect = 7e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1
Query: 460 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 627
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 79.4 bits (187), Expect = 8e-14
Identities = 55/173 (31%), Positives = 77/173 (44%), Gaps = 1/173 (0%)
Frame = +2
Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 322
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 323 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 502
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKVP--YLKMPLFVWGFFTTAILMIIA 196
Query: 503 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
+ +R T FFD A GG P+L+Q LF FFGHPEVYILILP +
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAM 249
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 78.2 bits (184), Expect = 2e-13
Identities = 54/217 (24%), Positives = 85/217 (39%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
L +L+R +L PG+ +N T H L+P +LGA D+
Sbjct: 78 LAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDL 136
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
FPR++ + + + +G +YPPL++ G D+ + L
Sbjct: 137 PFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSF 194
Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
++S + +PL+ V + + +
Sbjct: 195 IEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEME 254
Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
R + FFDP GGDP+L+QHLF FGHPEVYI+ LP
Sbjct: 255 RGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 78.2 bits (184), Expect = 2e-13
Identities = 47/107 (43%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
A +LIR EL PG L GD Q+YN I+TAHA N LVP+++GA
Sbjct: 30 AFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGA 89
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 316
PD+AFPR+NNI F VE GAGTG TV LS I
Sbjct: 90 PDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 75.4 bits (177), Expect = 1e-12
Identities = 54/217 (24%), Positives = 80/217 (36%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
L L IR +L P + YN ++T HA N +PL LG D+
Sbjct: 53 LALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDV 112
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 364
A PR+N G T Y PL+ + G SV + L+
Sbjct: 113 ALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAVILN- 171
Query: 365 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 544
G+ S ++P+F ++ T+ A + +
Sbjct: 172 -GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALLTYLE 230
Query: 545 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
L S F+P GG P+LYQ F F+ HP VY+++LP
Sbjct: 231 IKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLP 267
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 74.9 bits (176), Expect = 2e-12
Identities = 48/168 (28%), Positives = 72/168 (42%)
Frame = +2
Query: 152 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 331
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 332 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 511
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 512 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLP 334
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 73.7 bits (173), Expect = 4e-12
Identities = 52/170 (30%), Positives = 71/170 (41%)
Frame = +2
Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
L DR L+ FF GG+ + + ++F FGHPEVYILILP
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILP 313
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 73.7 bits (173), Expect = 4e-12
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 1/177 (0%)
Frame = +2
Query: 152 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 328
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 329 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 508
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 509 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWYNFSY 679
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG F Y
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTGAMFDY 286
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 73.7 bits (173), Expect = 4e-12
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Frame = +2
Query: 281 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 451
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 452 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 631
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 632 EVYILILP 655
EVY+LI+P
Sbjct: 403 EVYVLIIP 410
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
AL +IR EL +P S GD Y +VTAH N L+P +G+
Sbjct: 80 ALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGS 139
Query: 176 PDIAFPRINNIRF 214
D+A+PR+N+I F
Sbjct: 140 KDVAYPRLNSIGF 152
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 73.3 bits (172), Expect = 5e-12
Identities = 54/212 (25%), Positives = 81/212 (38%), Gaps = 14/212 (6%)
Frame = +2
Query: 62 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 241
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 242 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 412
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 413 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 580
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 581 -------GGDPILYQHLF*FFGHPEVYILILP 655
GG P+L+QHLF F+ HP VYI++LP
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLP 301
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 72.1 bits (169), Expect = 1e-11
Identities = 31/37 (83%), Positives = 33/37 (89%)
Frame = +2
Query: 548 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 658
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPG
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPG 227
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 71.7 bits (168), Expect = 2e-11
Identities = 47/170 (27%), Positives = 73/170 (42%)
Frame = +2
Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655
+ + DR L+T F+ GG +LY +L +GHPEVYILILP
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILP 288
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +2
Query: 299 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 478
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 479 TAFXXXXXXXXXAGAITILLTDR 547
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.1 bits (77), Expect = 1.7
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 133 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 258
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 69.7 bits (163), Expect = 6e-11
Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 16/226 (7%)
Frame = +2
Query: 32 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 211
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 212 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 376
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 377 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 556
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 557 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGI 661
TSFF P+G GG +L+QHLF FFGHPEVYI ILP +
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAM 299
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 69.7 bits (163), Expect = 6e-11
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +2
Query: 11 LLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
+LIR EL PG+ I G+ Q+YN ++TAHA N VP+++G+PD+
Sbjct: 37 VLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDM 96
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 292
AFPR+NNI F +VE G G+G TV
Sbjct: 97 AFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 67.7 bits (158), Expect = 3e-10
Identities = 42/106 (39%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 LRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAP 178
L +IR EL N GS L G+ Q +N ++TAHA N L+PL+LGA
Sbjct: 37 LSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGAS 96
Query: 179 DIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 316
D+AF R+NNI F +VE GAGTG TV SS +
Sbjct: 97 DMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 66.9 bits (156), Expect = 4e-10
Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 13/232 (5%)
Frame = +2
Query: 5 LRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 184
L LL R EL + G+ + YN V+ H N LVPL +GA D+
Sbjct: 43 LALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA-NYLVPLQIGADDL 101
Query: 185 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--IAHRGRSVDLAIFSL 358
AFPR+N + + G T+Y PL++ I G + +L
Sbjct: 102 AFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIPGEGLGATSVVLAL 161
Query: 359 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 538
+ + +P+F ++ +T + A+ IL
Sbjct: 162 IMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLFAFAALLAALMILA 221
Query: 539 TDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYILILPGI 661
+D L T++F D G +L+ HLF FFGHPEVYI+ P +
Sbjct: 222 SDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIVFFPAL 273
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 63.7 bits (148), Expect = 4e-09
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +2
Query: 2 ALRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 175
A+ ++IR EL PG+ L G+ Q++N +V HA N L+PL++GA
Sbjct: 31 AMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGA 90
Query: 176 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 292
D++F R+NNI F +VE+GAGTG TV
Sbjct: 91 SDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 62.1 bits (144), Expect = 1e-08
Identities = 44/174 (25%), Positives = 71/174 (40%)
Frame = +2
Query: 146 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 325
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 506 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGIWY 667
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP +
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGF 316
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 9e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2
Query: 257 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 379
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.8 bits (136), Expect = 1e-07
Identities = 32/75 (42%), Positives = 42/75 (56%)
Frame = +2
Query: 443 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 622
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 623 GHPEVYILILPGIWY 667
GH +V LIL W+
Sbjct: 72 GHTDVLFLIL--FWF 84
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 53.2 bits (122), Expect = 6e-06
Identities = 25/36 (69%), Positives = 26/36 (72%)
Frame = +1
Query: 547 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 654
K KYIIF S W F+STFILIFWT SLYFNFT
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFT 42
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +1
Query: 463 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 615
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 44.0 bits (99), Expect = 0.004
Identities = 34/123 (27%), Positives = 41/123 (33%)
Frame = +1
Query: 190 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 369
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 370 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 549
CM +YS + S+YNI K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198
Query: 550 LKY 558
KY
Sbjct: 199 PKY 201
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 42.7 bits (96), Expect = 0.008
Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 2/173 (1%)
Frame = +2
Query: 152 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 331
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 332 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 511
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 512 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP--GIW 664
+ L+D + F+ G P+ Y F F HPEVY+ ILP IW
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAIW 347
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 39.1 bits (87), Expect = 0.10
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 581 GGDPILYQHLF*FFGHPEVYILILPGI--WYNF 673
G DP+L + LF F GHP VY +LP WYNF
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAYISWYNF 256
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 37.9 bits (84), Expect = 0.24
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +2
Query: 2 ALRLLIRAELGNPGSLIGDDQIYNTIVTAHA 94
++ +LIR EL GS++ +QIYNT+VT+HA
Sbjct: 16 SMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
Score = 37.1 bits (82), Expect = 0.41
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +2
Query: 326 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 505
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 506 XXXAGAITILLTDRNLNT 559
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 36.3 bits (80), Expect = 0.72
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Frame = +2
Query: 617 FFGHPEVYILILPG---IWYNFSYYFTRK 694
FFGHPEVYILILPG I + +YY +K
Sbjct: 2 FFGHPEVYILILPGFGMISHIVAYYSGKK 30
>UniRef50_A7D123 Cluster: Cytochrome-c oxidase; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Cytochrome-c oxidase -
Halorubrum lacusprofundi ATCC 49239
Length = 597
Score = 33.1 bits (72), Expect = 6.7
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 587 DPILYQHLF*FFGHPEVYILILPG--IWY 667
+P L + LF FFGHP VY ++P +WY
Sbjct: 223 NPTLTRTLFWFFGHPVVYFWLMPAYLLWY 251
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 32.7 bits (71), Expect = 8.8
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 617 FFGHPEVYILILP 655
FFGHPEVY+LILP
Sbjct: 1 FFGHPEVYVLILP 13
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 8.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 546 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 424
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
n=1; Candida albicans|Rep: Putative uncharacterized
protein CLN3 - Candida albicans (Yeast)
Length = 785
Score = 32.7 bits (71), Expect = 8.8
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -2
Query: 600 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 463
Y++ +PP + +KN K S NN IA T ++NNN N+ +P H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,999,346
Number of Sequences: 1657284
Number of extensions: 8958023
Number of successful extensions: 20729
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 19074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20444
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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