BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1064 (697 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 184 1e-47 SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 28 1.5 SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 7.8 >SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 537 Score = 184 bits (448), Expect = 1e-47 Identities = 97/216 (44%), Positives = 120/216 (55%), Gaps = 2/216 (0%) Frame = +2 Query: 14 LIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIA 187 +IR EL PGS L G+ Q+YN ++AH N LVPL++GAPD+A Sbjct: 41 IIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVA 100 Query: 188 FPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 367 +PR+NN F + E G G G TVYPPLSS +H G ++DLAI SL L Sbjct: 101 YPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLT 160 Query: 368 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 547 GISS S Q+PLF A+ IT+ AG + +L +DR Sbjct: 161 GISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDR 220 Query: 548 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 655 NLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P Sbjct: 221 NLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMP 256 >SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 172 Score = 27.9 bits (59), Expect = 1.5 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +1 Query: 562 IF*SCWRRRPNFISTFILIFWTS*SLYFNFTRDLV*FLILFHKKE 696 +F S R+R I +IL F T +LY R++ ++FH KE Sbjct: 75 VFGSIHRKRIGAIDLYILDFATQHNLYVASLRNMGFLSLVFHTKE 119 >SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 762 Score = 25.4 bits (53), Expect = 7.8 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 217 TPTPLPYIINFKKNCRKWCRNRMNS 291 T T YIINFKKN + R +++S Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,090,192 Number of Sequences: 5004 Number of extensions: 36322 Number of successful extensions: 74 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 72 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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