Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1061
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    31   0.13 
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   2.1  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   2.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   4.8  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   6.4  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   6.4  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   8.4  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +2

Query: 140 ALIASSVMALYRVPLHR---MKTARTHFHEVGTELELLRL--KYDVTGPSPEPLSNYLDA 304
           AL AS   A   VP  R   +    + +  V  +LE  ++  K D +G     L  Y DA
Sbjct: 15  ALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPVLDLE-YTDA 73

Query: 305 Q-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 397
             Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 74  GGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 400 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 296
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 113 MGKISLFFLALIASSVMALYRVPLHRMKTARTH 211
           MGK+S+ + A IAS+ + ++  P +R      H
Sbjct: 1   MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 75  ISKSPSCGF*KQQWERYLYF 134
           + K P CGF    W  +L+F
Sbjct: 644 VGKGPGCGFWAPSWRVWLFF 663


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 263 TGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHY 409
           +GP  +  S+ L A+Y+ VI  G+P +S      +G S ++  SK  +Y
Sbjct: 204 SGPDVQKASD-LCAKYFAVIPDGSPLKSAPTKISSGESRVY--SKGTNY 249


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 242 LRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPP 340
           LR  Y VT P  + ++N L A+Y     I TPP
Sbjct: 18  LRSGYSVTAPVSKSMANVLWARYAST-RIKTPP 49


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 170 IVPLRSWRSAPKKIKISFPLLFLEAATR 87
           I+P  ++R   K IK   P   L+AATR
Sbjct: 419 IIPRLNYREVNKVIKNPTPSFLLDAATR 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,754
Number of Sequences: 5004
Number of extensions: 41327
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)