BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1061 (501 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_36362| Best HMM Match : Asp (HMM E-Value=0) 146 9e-36 SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09) 39 0.003 SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53 SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11) 29 2.8 SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2) 27 6.6 >SB_36362| Best HMM Match : Asp (HMM E-Value=0) Length = 326 Score = 146 bits (354), Expect = 9e-36 Identities = 71/106 (66%), Positives = 78/106 (73%), Gaps = 3/106 (2%) Frame = +2 Query: 191 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 361 M T R EVG +E L KY G PEPL NY+DAQYYG I+IGTPPQ F VVF Sbjct: 1 MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60 Query: 362 DTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQY 499 DTGSSNLWVPSKKC +TNIACLLH+KYDS KS TY NGT+FAI+Y Sbjct: 61 DTGSSNLWVPSKKCSWTNIACLLHDKYDSTKSSTYKKNGTEFAIRY 106 >SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09) Length = 278 Score = 38.7 bits (86), Expect = 0.003 Identities = 23/64 (35%), Positives = 32/64 (50%) Frame = +2 Query: 218 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSK 397 + G ++ LLR K D + E L YY ++G+PPQ V+ DTGSSN V + Sbjct: 11 KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAVAAS 69 Query: 398 KCHY 409 Y Sbjct: 70 AHPY 73 >SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 309 Score = 31.1 bits (67), Expect = 0.53 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +2 Query: 179 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 295 PL ++ R H ++ T LEL+ K + PS +PL++Y Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150 >SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11) Length = 585 Score = 28.7 bits (61), Expect = 2.8 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +2 Query: 167 LYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 283 ++ V L +K + ++++ GT+L + +LK T P P P Sbjct: 244 IHDVLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282 >SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2) Length = 423 Score = 27.5 bits (58), Expect = 6.6 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -1 Query: 255 YFNL---NSSSSVPTS*KWVLAVFIRCNGTLYSAITELAISAKKNKDIFP 115 YFN+ N ++++P + + L F+ T+Y I ++A + K K FP Sbjct: 89 YFNIKVANGTNNIPWTSPFELETFM--GSTVYKTIAKIAKTVSKGKKYFP 136 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,642,303 Number of Sequences: 59808 Number of extensions: 324950 Number of successful extensions: 1176 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1176 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1087245449 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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