Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1057
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    27   1.1  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   1.9  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   2.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   2.5  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   4.4  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   5.8  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    24   7.6  

>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 237 GEGQERA---YHRRRQEVYRRDGKLTDDANKAAKLTVT 341
           GEG E++   +  + +  YR +GK  D+A++A  + +T
Sbjct: 56  GEGNEKSEDEFEEKFKNPYRLEGKFKDEADRAKIMAMT 93


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 162 FIPDALVSCQVEVVPGFSSGQ 100
           F+ D +   Q+E+VPGFS G+
Sbjct: 379 FMDDYVNELQLEIVPGFSHGR 399


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 76  C*SYSRRHLPRAETGNNFNLTAYQGIWYEISK--FPNESEKNGKCSSAEYKLEGDVV 240
           C  Y   H PR E   +  L   +  +Y + K  +P E++K+GK    +  L+G++V
Sbjct: 73  CLLYMTEH-PRYENRPSVYLFDRKMNFYHVEKIFYPVENDKSGKKYHVDTLLDGELV 128


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 124 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 282
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 104 PELKPGTTST*QLTKASGMKSRNFPTNLRR 193
           P+L P  T    +TK  G+ SR   T +RR
Sbjct: 334 PQLHPDGTFVETITKPKGLHSRITMTEMRR 363


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 133 LTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHII 264
           L  + G+W ++ +F  E     KCS    KL G  V  K + ++
Sbjct: 869 LLMHHGLWQKLEEFLGELRTQTKCS---IKLSGREVVAKMLVVL 909


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 235 VVKVKNVHII-DGVKK-YIEGTASSPTMPIKPQ 327
           V+++KN  I   G K+ YI  T+ S  +P+KPQ
Sbjct: 219 VLELKNKKITYQGPKEQYIPMTSHSTNIPVKPQ 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,208,463
Number of Sequences: 5004
Number of extensions: 21008
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)