Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1057
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 48 2e-06
02_04_0592 - 24171698-24172285 36 0.009
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 30 0.56
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 29 1.3
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 29 1.3
07_01_1023 + 8840754-8842988,8843189-8843362 29 1.3
10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710... 28 1.7
12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839... 28 2.3
10_01_0144 - 1705429-1706250 28 2.3
04_04_1227 - 31882500-31882778,31883039-31883329,31883555-318838... 26 6.9
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 48.0 bits (109), Expect = 2e-06
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 124 NFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKYIEGTA 297
N +L Y G WYEI+ FP+ + ++G + A Y L GD VKV N DG + +IEGTA
Sbjct: 6 NLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGHIEGTA 65
>02_04_0592 - 24171698-24172285
Length = 195
Score = 35.9 bits (79), Expect = 0.009
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +1
Query: 130 NLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VHIIDGVKKYIEGTA 297
++ Y G WYEI+ PN + ++G+ + A Y L +G V V N G + YI+GTA
Sbjct: 21 DVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGKRDYIKGTA 80
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 29.9 bits (64), Expect = 0.56
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 124 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 234
NFN+ + G WY IS N + C E+++EGD
Sbjct: 204 NFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 113 KPGTTST*QLTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 244
KP T + + K G +SRN+ N+R +AL +++ W R
Sbjct: 331 KPPTYLSNLMCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 113 KPGTTST*QLTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 244
KP T + + K G +SRN+ N+R +AL +++ W R
Sbjct: 331 KPPTYLSNLMCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 130 NLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGV 273
NL G+W +++S N S K G C A D++ KN+ I+DGV
Sbjct: 302 NLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIVDGV 342
>10_07_0039 -
12269928-12270103,12270871-12271015,12271066-12271094,
12271394-12271478
Length = 144
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 169 KFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTASSP 306
K+ N+ K KC E +EGD + + I+DG ++ + G ++ P
Sbjct: 51 KWKNQQRKKIKCG--EPHMEGDFLPSVTIIIMDGGRRAVPGQSTVP 94
>12_01_1010 -
10280424-10282003,10283359-10283668,10283749-10283939,
10283967-10284279
Length = 797
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 157 YEISKFPNESEKNGKCSSAEYKLEG-DVVKVKNVHIIDGVKKYIEGTAS 300
YE+S++ SEK G S A L G KV+N+ +D +K +E S
Sbjct: 200 YELSEYKPLSEKIGSVSGAILILVGLSSSKVENLLTVDRAEKTLENLES 248
>10_01_0144 - 1705429-1706250
Length = 273
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 225 GR*RGEGQERAYHRRRQEVYRRDGKLTDDANKAAKL 332
GR G+G E A RR+ RRDG DD A L
Sbjct: 198 GRGGGDGMEVAMGWRRRRRQRRDGGGNDDGTAEAAL 233
>04_04_1227 -
31882500-31882778,31883039-31883329,31883555-31883800,
31884212-31884353,31884583-31884653
Length = 342
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = +1
Query: 115 TGNNFNLTAYQGIWYEISK----FPNESEKNGKCSSAEYKLE--GDVVKVKNVHIIDGVK 276
T NF+ Y G W+E++ F + +++ C+ Y + ++V + G
Sbjct: 118 TAKNFDPIRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYSFDEKSRSIQVDTFCVHGGPD 177
Query: 277 KYIEG 291
YI G
Sbjct: 178 GYITG 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,040,754
Number of Sequences: 37544
Number of extensions: 142860
Number of successful extensions: 350
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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