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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1057
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    48   2e-06
02_04_0592 - 24171698-24172285                                         36   0.009
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    30   0.56 
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673...    29   1.3  
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209...    29   1.3  
07_01_1023 + 8840754-8842988,8843189-8843362                           29   1.3  
10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710...    28   1.7  
12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839...    28   2.3  
10_01_0144 - 1705429-1706250                                           28   2.3  
04_04_1227 - 31882500-31882778,31883039-31883329,31883555-318838...    26   6.9  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +1

Query: 124 NFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKYIEGTA 297
           N +L  Y G WYEI+ FP+  + ++G  + A Y L GD  VKV N    DG + +IEGTA
Sbjct: 6   NLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGHIEGTA 65


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = +1

Query: 130 NLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VHIIDGVKKYIEGTA 297
           ++  Y G WYEI+  PN  + ++G+ + A Y L  +G  V V N      G + YI+GTA
Sbjct: 21  DVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGKRDYIKGTA 80


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 124 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 234
           NFN+  + G WY IS   N +     C   E+++EGD
Sbjct: 204 NFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>11_06_0684 -
           26264540-26264661,26264926-26264989,26267168-26267371,
           26268322-26268456,26269174-26269492,26269581-26269631,
           26269721-26269864,26270080-26270160,26270252-26270302,
           26270392-26270535,26270750-26270833,26270912-26271055,
           26271147-26271196
          Length = 530

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 113 KPGTTST*QLTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 244
           KP T  +  + K  G +SRN+  N+R   +AL     +++ W R
Sbjct: 331 KPPTYLSNLMCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374


>11_06_0275 -
           21818071-21818192,21818457-21818520,21820699-21820902,
           21821852-21821986,21822704-21823022,21823111-21823161,
           21823251-21823394,21823610-21823690,21823782-21823832,
           21823922-21824065,21824280-21824363,21824442-21824585,
           21824677-21824726
          Length = 530

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 113 KPGTTST*QLTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 244
           KP T  +  + K  G +SRN+  N+R   +AL     +++ W R
Sbjct: 331 KPPTYLSNLMCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 130 NLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGV 273
           NL    G+W +++S   N S K G C  A      D++  KN+ I+DGV
Sbjct: 302 NLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIVDGV 342


>10_07_0039 -
           12269928-12270103,12270871-12271015,12271066-12271094,
           12271394-12271478
          Length = 144

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 169 KFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTASSP 306
           K+ N+  K  KC   E  +EGD +    + I+DG ++ + G ++ P
Sbjct: 51  KWKNQQRKKIKCG--EPHMEGDFLPSVTIIIMDGGRRAVPGQSTVP 94


>12_01_1010 -
           10280424-10282003,10283359-10283668,10283749-10283939,
           10283967-10284279
          Length = 797

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 157 YEISKFPNESEKNGKCSSAEYKLEG-DVVKVKNVHIIDGVKKYIEGTAS 300
           YE+S++   SEK G  S A   L G    KV+N+  +D  +K +E   S
Sbjct: 200 YELSEYKPLSEKIGSVSGAILILVGLSSSKVENLLTVDRAEKTLENLES 248


>10_01_0144 - 1705429-1706250
          Length = 273

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 225 GR*RGEGQERAYHRRRQEVYRRDGKLTDDANKAAKL 332
           GR  G+G E A   RR+   RRDG   DD    A L
Sbjct: 198 GRGGGDGMEVAMGWRRRRRQRRDGGGNDDGTAEAAL 233


>04_04_1227 -
           31882500-31882778,31883039-31883329,31883555-31883800,
           31884212-31884353,31884583-31884653
          Length = 342

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = +1

Query: 115 TGNNFNLTAYQGIWYEISK----FPNESEKNGKCSSAEYKLE--GDVVKVKNVHIIDGVK 276
           T  NF+   Y G W+E++     F  + +++  C+   Y  +     ++V    +  G  
Sbjct: 118 TAKNFDPIRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYSFDEKSRSIQVDTFCVHGGPD 177

Query: 277 KYIEG 291
            YI G
Sbjct: 178 GYITG 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,040,754
Number of Sequences: 37544
Number of extensions: 142860
Number of successful extensions: 350
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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