BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1057 (346 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 48 2e-06 02_04_0592 - 24171698-24172285 36 0.009 04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 30 0.56 11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 29 1.3 11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 29 1.3 07_01_1023 + 8840754-8842988,8843189-8843362 29 1.3 10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710... 28 1.7 12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839... 28 2.3 10_01_0144 - 1705429-1706250 28 2.3 04_04_1227 - 31882500-31882778,31883039-31883329,31883555-318838... 26 6.9 >08_02_0805 + 21400345-21400701,21400797-21400975,21401223-21401271, 21401310-21401390,21401988-21402605 Length = 427 Score = 48.0 bits (109), Expect = 2e-06 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Frame = +1 Query: 124 NFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKYIEGTA 297 N +L Y G WYEI+ FP+ + ++G + A Y L GD VKV N DG + +IEGTA Sbjct: 6 NLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGHIEGTA 65 >02_04_0592 - 24171698-24172285 Length = 195 Score = 35.9 bits (79), Expect = 0.009 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +1 Query: 130 NLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VHIIDGVKKYIEGTA 297 ++ Y G WYEI+ PN + ++G+ + A Y L +G V V N G + YI+GTA Sbjct: 21 DVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGKRDYIKGTA 80 >04_03_0673 - 18562497-18563010,18563080-18563471,18563553-18563649, 18563977-18564149,18564349-18564485,18564806-18564872 Length = 459 Score = 29.9 bits (64), Expect = 0.56 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +1 Query: 124 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 234 NFN+ + G WY IS N + C E+++EGD Sbjct: 204 NFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239 >11_06_0684 - 26264540-26264661,26264926-26264989,26267168-26267371, 26268322-26268456,26269174-26269492,26269581-26269631, 26269721-26269864,26270080-26270160,26270252-26270302, 26270392-26270535,26270750-26270833,26270912-26271055, 26271147-26271196 Length = 530 Score = 28.7 bits (61), Expect = 1.3 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 113 KPGTTST*QLTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 244 KP T + + K G +SRN+ N+R +AL +++ W R Sbjct: 331 KPPTYLSNLMCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374 >11_06_0275 - 21818071-21818192,21818457-21818520,21820699-21820902, 21821852-21821986,21822704-21823022,21823111-21823161, 21823251-21823394,21823610-21823690,21823782-21823832, 21823922-21824065,21824280-21824363,21824442-21824585, 21824677-21824726 Length = 530 Score = 28.7 bits (61), Expect = 1.3 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 113 KPGTTST*QLTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 244 KP T + + K G +SRN+ N+R +AL +++ W R Sbjct: 331 KPPTYLSNLMCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374 >07_01_1023 + 8840754-8842988,8843189-8843362 Length = 802 Score = 28.7 bits (61), Expect = 1.3 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +1 Query: 130 NLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGV 273 NL G+W +++S N S K G C A D++ KN+ I+DGV Sbjct: 302 NLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIVDGV 342 >10_07_0039 - 12269928-12270103,12270871-12271015,12271066-12271094, 12271394-12271478 Length = 144 Score = 28.3 bits (60), Expect = 1.7 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +1 Query: 169 KFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTASSP 306 K+ N+ K KC E +EGD + + I+DG ++ + G ++ P Sbjct: 51 KWKNQQRKKIKCG--EPHMEGDFLPSVTIIIMDGGRRAVPGQSTVP 94 >12_01_1010 - 10280424-10282003,10283359-10283668,10283749-10283939, 10283967-10284279 Length = 797 Score = 27.9 bits (59), Expect = 2.3 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +1 Query: 157 YEISKFPNESEKNGKCSSAEYKLEG-DVVKVKNVHIIDGVKKYIEGTAS 300 YE+S++ SEK G S A L G KV+N+ +D +K +E S Sbjct: 200 YELSEYKPLSEKIGSVSGAILILVGLSSSKVENLLTVDRAEKTLENLES 248 >10_01_0144 - 1705429-1706250 Length = 273 Score = 27.9 bits (59), Expect = 2.3 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +3 Query: 225 GR*RGEGQERAYHRRRQEVYRRDGKLTDDANKAAKL 332 GR G+G E A RR+ RRDG DD A L Sbjct: 198 GRGGGDGMEVAMGWRRRRRQRRDGGGNDDGTAEAAL 233 >04_04_1227 - 31882500-31882778,31883039-31883329,31883555-31883800, 31884212-31884353,31884583-31884653 Length = 342 Score = 26.2 bits (55), Expect = 6.9 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Frame = +1 Query: 115 TGNNFNLTAYQGIWYEISK----FPNESEKNGKCSSAEYKLE--GDVVKVKNVHIIDGVK 276 T NF+ Y G W+E++ F + +++ C+ Y + ++V + G Sbjct: 118 TAKNFDPIRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYSFDEKSRSIQVDTFCVHGGPD 177 Query: 277 KYIEG 291 YI G Sbjct: 178 GYITG 182 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,040,754 Number of Sequences: 37544 Number of extensions: 142860 Number of successful extensions: 350 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 347 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 349 length of database: 14,793,348 effective HSP length: 73 effective length of database: 12,052,636 effective search space used: 494158076 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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