Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1057
(346 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08) 34 0.036
SB_26005| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.082
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) 30 0.44
SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058) 28 2.3
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1) 27 3.1
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 26 9.4
SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7) 26 9.4
>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
Length = 418
Score = 33.9 bits (74), Expect = 0.036
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +1
Query: 112 ETGNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD----VVKVKNVHIIDG 270
+T N+T+Y G WY++ S F E E+N C +A+Y L D VV DG
Sbjct: 239 DTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNRDKKPDG 298
Query: 271 VKKYIEGTASSP 306
K I G A P
Sbjct: 299 ELKQITGYAYQP 310
>SB_26005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 32.7 bits (71), Expect = 0.082
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 112 ETGNNFNLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIE 288
ETGNNFN + QG W K P+ + + Y GD+ K++ + + + ++ + E
Sbjct: 752 ETGNNFNASGLQGDWAMRRVKGPSHDSPQ-ETAMGVYLEHGDLEKLETLQVKEFMRNF-E 809
Query: 289 GTASSPTMPI 318
TMP+
Sbjct: 810 RECRKVTMPV 819
>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
Length = 442
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 170 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGRQ 298
NF T +AL++ W VTW R C +T S + GR+
Sbjct: 33 NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGRK 75
>SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)
Length = 878
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 109 AETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVV 240
A TG+N+ +TAY G Y ++ + S + + Y + V
Sbjct: 455 AHTGSNYTMTAYTGFNYTMTAYTGSSYTMTAYTGSNYTMTAHTV 498
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 109 AETGNNFNLTAYQGIWYEISKFPNES 186
A TG+N+ +TAY G Y I+ + S
Sbjct: 415 AHTGSNYTMTAYTGSNYTITAYTESS 440
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 109 AETGNNFNLTAYQGIWYEISKFPNES 186
A TG+NF +TAY G Y ++ + S
Sbjct: 835 AYTGSNFTMTAYTGSNYTMTAYTGSS 860
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 100 LPRAETGNNFNLTAYQGIWYEISKFPNES 186
+P A TG+N+ +TAY G Y ++ S
Sbjct: 282 VPGAYTGSNYTMTAYTGSNYTMTAHTGSS 310
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 109 AETGNNFNLTAYQGIWYEISKFPNES 186
A TG+N+ +TAY G Y ++ + S
Sbjct: 685 AHTGSNYTMTAYTGSNYAMTAYTGSS 710
>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
Length = 508
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 160 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVK 276
E+ ++ ESE+NGK SS + + V +K + + DG K
Sbjct: 38 EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAK 75
>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 26.2 bits (55), Expect = 7.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 88 SRRHLPRAETGNNF--NLTAYQGIWYEISKFPNESEKNGKCSSA-EYKLEGDVVK 243
++R R GN F +L + + + PNESE CSS E EG+ K
Sbjct: 200 NQRRKKRRFCGNRFTGSLNLEESEYKRVENSPNESENEPSCSSGMEPVQEGNPAK 254
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 101 CPELKPGTTST*QLTKASGMKSRNFP 178
C KPG ST T A G S FP
Sbjct: 1852 CETAKPGANSTASKTPAFGASSSTFP 1877
>SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)
Length = 519
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 234 RGEGQERAYHRRRQ--EVYRRDGKLTDD 311
RGEGQ+ RRRQ +RR G L D
Sbjct: 459 RGEGQQNGGKRRRQGKVAFRRSGLLQAD 486
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,089,919
Number of Sequences: 59808
Number of extensions: 166395
Number of successful extensions: 430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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