Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1057
         (346 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M16696-1|AAA51764.1|  189|Homo sapiens APOD protein.                   50   3e-06
J02611-1|AAB59517.1|  189|Homo sapiens APOD protein.                   50   3e-06
CR541773-1|CAG46572.1|  189|Homo sapiens APOD protein.                 50   3e-06
CR456838-1|CAG33119.1|  189|Homo sapiens APOD protein.                 50   3e-06
BT019861-1|AAV38664.1|  189|Homo sapiens apolipoprotein D protein.     50   3e-06
BT019860-1|AAV38663.1|  189|Homo sapiens apolipoprotein D protein.     50   3e-06
BC007402-1|AAH07402.1|  189|Homo sapiens apolipoprotein D protein.     50   3e-06
BC139923-1|AAI39924.1|  467|Homo sapiens ATRNL1 protein protein.       28   9.0  
BC139916-1|AAI39917.1|  467|Homo sapiens ATRNL1 protein protein.       28   9.0  
BC047716-1|AAH47716.1|  467|Homo sapiens ATRNL1 protein protein.       28   9.0  
BC028601-1|AAH28601.1| 1159|Homo sapiens SLC4A2 protein protein.       28   9.0  
AY442317-1|AAR14297.1| 1379|Homo sapiens attractin-like protein ...    28   9.0  
AL512304-1|CAH74015.2| 1379|Homo sapiens attractin-like 1 protein.     28   9.0  
AL392087-1|CAI40794.2| 1379|Homo sapiens attractin-like 1 protein.     28   9.0  
AL357059-1|CAH70625.2| 1379|Homo sapiens attractin-like 1 protein.     28   9.0  
AL356100-1|CAI40417.2| 1379|Homo sapiens attractin-like 1 protein.     28   9.0  
AL355530-2|CAI13482.1|  476|Homo sapiens attractin-like 1 protein.     28   9.0  
AL355530-1|CAI13483.2| 1379|Homo sapiens attractin-like 1 protein.     28   9.0  
AK127277-1|BAC86914.1| 1233|Homo sapiens protein ( Homo sapiens ...    28   9.0  

>M16696-1|AAA51764.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 103 PRAETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVK 276
           P      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N  +  DG  
Sbjct: 29  PNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTV 87

Query: 277 KYIEGTAS 300
             IEG A+
Sbjct: 88  NQIEGEAT 95


>J02611-1|AAB59517.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 103 PRAETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVK 276
           P      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N  +  DG  
Sbjct: 29  PNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTV 87

Query: 277 KYIEGTAS 300
             IEG A+
Sbjct: 88  NQIEGEAT 95


>CR541773-1|CAG46572.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 103 PRAETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVK 276
           P      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N  +  DG  
Sbjct: 29  PNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTV 87

Query: 277 KYIEGTAS 300
             IEG A+
Sbjct: 88  NQIEGEAT 95


>CR456838-1|CAG33119.1|  189|Homo sapiens APOD protein.
          Length = 189

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 103 PRAETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVK 276
           P      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N  +  DG  
Sbjct: 29  PNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTV 87

Query: 277 KYIEGTAS 300
             IEG A+
Sbjct: 88  NQIEGEAT 95


>BT019861-1|AAV38664.1|  189|Homo sapiens apolipoprotein D protein.
          Length = 189

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 103 PRAETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVK 276
           P      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N  +  DG  
Sbjct: 29  PNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTV 87

Query: 277 KYIEGTAS 300
             IEG A+
Sbjct: 88  NQIEGEAT 95


>BT019860-1|AAV38663.1|  189|Homo sapiens apolipoprotein D protein.
          Length = 189

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 103 PRAETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVK 276
           P      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N  +  DG  
Sbjct: 29  PNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTV 87

Query: 277 KYIEGTAS 300
             IEG A+
Sbjct: 88  NQIEGEAT 95


>BC007402-1|AAH07402.1|  189|Homo sapiens apolipoprotein D protein.
          Length = 189

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 103 PRAETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVK 276
           P      NF++  Y G WYEI K P   E NG+C  A Y L E   +KV N  +  DG  
Sbjct: 29  PNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTV 87

Query: 277 KYIEGTAS 300
             IEG A+
Sbjct: 88  NQIEGEAT 95


>BC139923-1|AAI39924.1|  467|Homo sapiens ATRNL1 protein protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>BC139916-1|AAI39917.1|  467|Homo sapiens ATRNL1 protein protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>BC047716-1|AAH47716.1|  467|Homo sapiens ATRNL1 protein protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>BC028601-1|AAH28601.1| 1159|Homo sapiens SLC4A2 protein protein.
          Length = 1159

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +1

Query: 28  IQNAEASATDSA---CGGDC*SYSRRHLPRAETGN-NFNL 135
           ++ AEA A   A    GGD    S RHLP+A+ G+ ++NL
Sbjct: 114 VEEAEAEAVAVASGTAGGDDGGASGRHLPKAQPGHRSYNL 153


>AY442317-1|AAR14297.1| 1379|Homo sapiens attractin-like protein
           protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>AL512304-1|CAH74015.2| 1379|Homo sapiens attractin-like 1 protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>AL392087-1|CAI40794.2| 1379|Homo sapiens attractin-like 1 protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>AL357059-1|CAH70625.2| 1379|Homo sapiens attractin-like 1 protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>AL356100-1|CAI40417.2| 1379|Homo sapiens attractin-like 1 protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>AL355530-2|CAI13482.1|  476|Homo sapiens attractin-like 1 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>AL355530-1|CAI13483.2| 1379|Homo sapiens attractin-like 1 protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 197 YNLTGFN-IFYSINSCPNNCSGHGKCTTS 224


>AK127277-1|BAC86914.1| 1233|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45344 fis, clone BRHIP3010289, moderately
           similar to Attractin precursor. ).
          Length = 1233

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 FNLTAYQGIWYEISKFPNESEKNGKCSSA 213
           +NLT +  I+Y I+  PN    +GKC+++
Sbjct: 51  YNLTGFN-IFYSINSCPNNCSGHGKCTTS 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,057,674
Number of Sequences: 237096
Number of extensions: 720813
Number of successful extensions: 1470
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)