Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1057
(346 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 29 1.2
U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 27 3.6
U88184-5|AAK95876.1| 523|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 26 8.3
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z75711-11|CAB00038.1| 755|Caenorhabditis elegans Hypothetical p... 26 8.3
Z75710-10|CAB00029.1| 755|Caenorhabditis elegans Hypothetical p... 26 8.3
U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical pr... 26 8.3
AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine r... 26 8.3
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 26 8.3
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 85 YSRRHLPRAETGNNFNLTAYQGIWYEISKFPNES 186
YS + A + ++ L QG+W EIS+ P+E+
Sbjct: 557 YSEEYGQEASSSSSTILPDVQGVWSEISELPSEN 590
>U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical
protein C18H9.3 protein.
Length = 918
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 151 IWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTASSPTMPIKP 324
+W++ F +ES + + + EYK GD +K +H +Y+E P PI P
Sbjct: 399 VWFKAGYFTDESLRVQRGENGEYKTIGD---LKKLHGSSTPFEYLEDI--EPPRPILP 451
>U88184-5|AAK95876.1| 523|Caenorhabditis elegans Hypothetical
protein F36H5.11 protein.
Length = 523
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 82 SYSRRHLPRAETGNNFNLTAYQGIWYEIS 168
+Y R +LPR + G +F++T G+ IS
Sbjct: 227 AYERENLPRIKHGRSFDITRGDGVVATIS 255
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 181 ESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIE 288
E +GK + K GD V V ++I+ V KY E
Sbjct: 2751 EQSADGKAVTVNLKPNGDEVLVNKDNVIEYVYKYAE 2786
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 178 NESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTASSPT 309
++SE NGKCS E + E ++++K G K +E PT
Sbjct: 170 HDSESNGKCSEEEDEDESYLIQLK---YFGGSGKPLEQGQEKPT 210
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 181 ESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIE 288
E +GK + K GD V V ++I+ V KY E
Sbjct: 2751 EQSADGKAVTVNLKPNGDEVLVNKDNVIEYVYKYAE 2786
>Z75711-11|CAB00038.1| 755|Caenorhabditis elegans Hypothetical
protein D1081.8 protein.
Length = 755
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 244 VKNVHIIDGVKKYIEGTASS 303
VK H D V++YI+GTA+S
Sbjct: 306 VKIGHASDSVRQYIDGTATS 325
>Z75710-10|CAB00029.1| 755|Caenorhabditis elegans Hypothetical
protein D1081.8 protein.
Length = 755
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 244 VKNVHIIDGVKKYIEGTASS 303
VK H D V++YI+GTA+S
Sbjct: 306 VKIGHASDSVRQYIDGTATS 325
>U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical
protein ZC449.1 protein.
Length = 454
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 166 SKFPNESEKNGKCSSAEYKLEGDVVKVK 249
S+ + S NG S +YK+ G+ V+V+
Sbjct: 415 SESESSSPSNGGWSECDYKINGETVRVR 442
>AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine
receptor, class j protein44 protein.
Length = 350
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 82 SYSRRHLPRAETGNNFNLTAYQGIWYEISKFPNES 186
S +R H TG+ + L AY +W+ FP ++
Sbjct: 124 SLTRHHFHWFMTGSVYMLFAYFSVWHATCYFPGKA 158
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 255 AYHRRRQEVYRRDGKLTDDANKAAKLT 335
AY + + +YRR+GK+T+ KLT
Sbjct: 598 AYGMKCEGIYRRNGKVTEAKTILTKLT 624
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,799,527
Number of Sequences: 27780
Number of extensions: 122869
Number of successful extensions: 348
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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