Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1057
(346 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58070.1 68418.m07267 lipocalin, putative similar to temperat... 42 8e-05
At4g24670.2 68417.m03532 alliinase family protein contains Pfam ... 30 0.48
At4g24670.1 68417.m03531 alliinase family protein contains Pfam ... 30 0.48
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative... 28 1.5
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu... 28 1.9
At2g05084.1 68415.m00532 hypothetical protein 27 2.5
At5g37100.1 68418.m04453 replication protein-related weak simila... 27 4.4
At3g47860.1 68416.m05217 apolipoprotein D-related contains weak ... 27 4.4
At4g04260.1 68417.m00603 bromo-adjacent homology (BAH) domain-co... 26 5.9
At3g05150.1 68416.m00559 sugar transporter family protein simila... 26 5.9
At2g14800.1 68415.m01677 hypothetical protein 26 5.9
At1g59560.1 68414.m06698 expressed protein contains similarity t... 26 7.7
At1g08890.1 68414.m00989 sugar transporter family protein simila... 26 7.7
>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
stress-induced lipocalin [Triticum aestivum] GI:18650668
Length = 186
Score = 42.3 bits (95), Expect = 8e-05
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 112 ETGNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKYI 285
E N+ Y G WYEI+ FP+ + KNG + A Y L D + V N +G + +I
Sbjct: 8 EVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRGFI 67
Query: 286 EGTA 297
EG+A
Sbjct: 68 EGSA 71
>At4g24670.2 68417.m03532 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 440
Score = 29.9 bits (64), Expect = 0.48
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 112 ETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGV--KKYI 285
E G++++ TAY IW +S +ES S K+E D ++ N+ D ++Y
Sbjct: 34 ERGDSWDRTAYVSIWPVVSTTASESSSLSSASCNYSKIEEDDDRIINLKFGDPTVYERYW 93
Query: 286 EGTASSPTMPI 318
+ TM I
Sbjct: 94 QENGEVTTMVI 104
>At4g24670.1 68417.m03531 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 440
Score = 29.9 bits (64), Expect = 0.48
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 112 ETGNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGV--KKYI 285
E G++++ TAY IW +S +ES S K+E D ++ N+ D ++Y
Sbjct: 34 ERGDSWDRTAYVSIWPVVSTTASESSSLSSASCNYSKIEEDDDRIINLKFGDPTVYERYW 93
Query: 286 EGTASSPTMPI 318
+ TM I
Sbjct: 94 QENGEVTTMVI 104
>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 345
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +1
Query: 163 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 261
+S FP ES+ + K ++ E+KL G + V VKN+++
Sbjct: 14 VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48
>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
putative (AVDE1) similar to EST gb|N37612
Length = 462
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 124 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 255
NFN++ + G WY I+ N + C E+ EGD V N+
Sbjct: 206 NFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248
>At2g05084.1 68415.m00532 hypothetical protein
Length = 258
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 100 LPRAETGNNFNLTAYQGIWYEISKF 174
+P E NNF T ++G WY + F
Sbjct: 54 IPWGEYMNNFKTTLFEGKWYYLQHF 78
>At5g37100.1 68418.m04453 replication protein-related weak
similarity to Replication Protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DMRPA1)
(GI:2498844)(SP:Q24492) [Drosophila melanogaster]
Length = 269
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 100 LPRAETGNNFNLTAYQGIWYEISKFP-NESEKNGKCSSAEYKLE 228
+P + NNF + ++G WY I+ F + K SS Y++E
Sbjct: 54 VPWGDYLNNFKPSLFEGKWYYIADFRLKRATSIPKYSSFNYEIE 97
>At3g47860.1 68416.m05217 apolipoprotein D-related contains weak
similarity to Apolipoprotein D precursor (ApoD)
(Swiss-Prot:P51910) [Mus musculus]
Length = 353
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 106 RAETGNNFNLTAYQGIWYEISK----FPNESEKNGKCSSAEYKLE 228
R T NF+ Y G W+E++ F + +++ C+ Y +
Sbjct: 127 RGMTAKNFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFD 171
>At4g04260.1 68417.m00603 bromo-adjacent homology (BAH)
domain-containing protein similar to ES43 [Hordeum
vulgare] GI:1345528; contains Pfam profile PF01426: BAH
domain
Length = 193
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 265 DGVKKYIEGTASSPTMPIKPQS 330
DGVK++ G ASS T +KP +
Sbjct: 160 DGVKRFQNGFASSTTNDLKPSA 181
>At3g05150.1 68416.m00559 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 470
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 164 SRNFPTNLRRTANALQLNTNWKVTW 238
S FP NL+ TA L NW +W
Sbjct: 394 SEIFPINLKGTAGGLVTVVNWLSSW 418
>At2g14800.1 68415.m01677 hypothetical protein
Length = 580
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 146 KASGMKSRNFPTNLRRTANALQLNTNWKVTW*RSRTC 256
K G+KS F N + + N W TW R TC
Sbjct: 175 KLKGLKSWMFKYNFEKRILEKRHNRGWLHTWSRRVTC 211
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 185 LRRTANALQLNTNWKVTW*RSRT 253
L+RTA L NW+ +W R+ T
Sbjct: 78 LKRTAEQQVLRRNWRFSWVRNST 100
>At1g08890.1 68414.m00989 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 464
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 164 SRNFPTNLRRTANALQLNTNWKVTW 238
S FP N++ TA +L +NW +W
Sbjct: 385 SEVFPVNVKITAGSLVTVSNWFFSW 409
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,414,890
Number of Sequences: 28952
Number of extensions: 114369
Number of successful extensions: 316
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -