Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1054
         (627 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8E511 Cluster: Putative uncharacterized protein gbs122...    36   0.79 
UniRef50_A3LZ77 Cluster: Predicted protein; n=1; Pichia stipitis...    35   1.4  
UniRef50_Q16W36 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_Q4V709 Cluster: IP01435p; n=2; Drosophila melanogaster|...    33   4.2  
UniRef50_Q22BE4 Cluster: Aldehyde dehydrogenase (NAD) family pro...    33   4.2  
UniRef50_A2EF74 Cluster: Putative uncharacterized protein; n=1; ...    33   7.4  
UniRef50_Q05808 Cluster: Vitellogenin precursor [Contains: YP47;...    33   7.4  
UniRef50_Q64S15 Cluster: Sigma factor SigB regulation protein Rs...    32   9.8  
UniRef50_Q8IL45 Cluster: Putative uncharacterized protein; n=1; ...    32   9.8  
UniRef50_Q8I3C5 Cluster: Putative uncharacterized protein PFI011...    32   9.8  

>UniRef50_Q8E511 Cluster: Putative uncharacterized protein gbs1223;
           n=3; Streptococcus agalactiae|Rep: Putative
           uncharacterized protein gbs1223 - Streptococcus
           agalactiae serotype III
          Length = 315

 Score = 35.9 bits (79), Expect = 0.79
 Identities = 26/109 (23%), Positives = 51/109 (46%)
 Frame = +1

Query: 121 LKMKTISTCLKSQHRSQILACHTVAIKLKNQHISYLKKRSYRIPLVTPVMFVIVYGF*KI 300
           +K    S+ L  +   +    H  A + +NQ  +YL   +Y    +  + + IV  F KI
Sbjct: 73  IKQILFSSILDVEKHLKSSIAHRFAERFQNQTYAYLNTNNYSSDKILEISY-IVSKFSKI 131

Query: 301 LNVDQQMKKSYLNELR*SSPIVV*FTII*YLTNSNYMIFFRILRMSLKS 447
           +N +++ K + +N    +   V  + II Y+   + + F + L  SL++
Sbjct: 132 INTNKKFKNNSINHYVNNYSDVPIWVIIDYIEFGDLLTFIKNLDKSLQN 180


>UniRef50_A3LZ77 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 437

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 489 IPFLATYNGFKYPQRPVDLPELDIIAER 572
           IPF+  YNGFKY +RP   PE+  + ER
Sbjct: 321 IPFVDIYNGFKYAKRPPIDPEIGSLQER 348


>UniRef50_Q16W36 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 1647

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 93  FYNQPRNEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFG 257
           F  QP     + +D  +  +   SEPN  L   +++++K A++ FKK  +Q  FG
Sbjct: 731 FNRQPIKPTSDYDDEDDSGDRRNSEPNIELDDLNFRSRKRANETFKKLEVQPPFG 785


>UniRef50_Q4V709 Cluster: IP01435p; n=2; Drosophila
           melanogaster|Rep: IP01435p - Drosophila melanogaster
           (Fruit fly)
          Length = 236

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 168 PNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCDRLWFL-EDLKC 308
           PNS+       +Q SA K  KKK+L+ +  H CN+C + + L   LKC
Sbjct: 125 PNSNSNGNGNVSQSSAQKDTKKKMLKKT--HKCNICGKYFMLPAHLKC 170


>UniRef50_Q22BE4 Cluster: Aldehyde dehydrogenase (NAD) family protein;
            n=2; Oligohymenophorea|Rep: Aldehyde dehydrogenase (NAD)
            family protein - Tetrahymena thermophila SB210
          Length = 2303

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +3

Query: 111  NEFIE-NEDNINMSEESTSEPNSSLPYRSYQTQKSAHK--LFKKKILQNSF 254
            N+FIE NE  IN  +   + P+S+ P+ ++QTQ + +K    + K+ Q  F
Sbjct: 1393 NKFIEENEKTINSPQSDQNTPSSNHPFSTFQTQYAINKNQSEQNKLFQQKF 1443


>UniRef50_A2EF74 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 446

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +3

Query: 81  MKWKFYNQPRNEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGH 260
           +K K YN P N  +  +  IN+         +S+  + YQ QK+  +      +Q+ +  
Sbjct: 283 VKLKNYNAPTNALMSLKKQINLLTVQCRFKEASVVTKEYQRQKAHEEKESFAQMQHDYDE 342

Query: 261 A-CNVCDRLWFLEDLKCGSADEEILLKRITV 350
           A   + DR    E+LK   A  EI +K   V
Sbjct: 343 ALTKILDRQ--KEELKAFDAQTEIRVKHFEV 371


>UniRef50_Q05808 Cluster: Vitellogenin precursor [Contains: YP47;
           YP160]; n=2; Curculionidae|Rep: Vitellogenin precursor
           [Contains: YP47; YP160] - Anthonomus grandis (Boll
           weevil)
          Length = 1790

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 96  YNQPRNEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKK 233
           Y QP+N  + ++ N N+ E+S+SE +S       + ++SA+ L K+
Sbjct: 326 YGQPKNNQVHSKLNENLMEDSSSEESSEQEMTHRRFRRSANSLTKQ 371


>UniRef50_Q64S15 Cluster: Sigma factor SigB regulation protein RsbU;
           n=2; Bacteroides fragilis|Rep: Sigma factor SigB
           regulation protein RsbU - Bacteroides fragilis
          Length = 389

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 441 QVMMCKTSRASILKGNIPFLATYNGFKYPQRPVDLPELDIIAERLILPRL 590
           +V++ +  R  I KG   F   +NG +  Q+ ++ P+ DII   + +P +
Sbjct: 15  EVLLTQYFRRQIRKGEYEFAFAHNGLEALQKLLETPDFDIILSDINMPEM 64


>UniRef50_Q8IL45 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 3504

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 111  NEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKK 236
            N+ I+   +I  + ++ SE  +S PY+ Y   KS HK+  KK
Sbjct: 3322 NDKIDKLGDIVENTKNISEGKNSFPYKYYTDTKSVHKIIYKK 3363


>UniRef50_Q8I3C5 Cluster: Putative uncharacterized protein PFI0110c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFI0110c - Plasmodium falciparum
           (isolate 3D7)
          Length = 608

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 78  LMKWKFYNQPRNEFIENEDNINMSEESTSE-PNSSLPYRSYQTQKS-AHKLFKKKILQN 248
           +  W+  N+  NEF+ + DN  M+  +  +   +++P + Y T++   H++FK  I  N
Sbjct: 210 IYNWELGNKTVNEFLGHADNFEMNGVNYYDWKLTTIPTKGYNTERGRGHEMFKAVIPSN 268


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,660,277
Number of Sequences: 1657284
Number of extensions: 11366673
Number of successful extensions: 27656
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27643
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)