Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1054
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.8  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   8.4  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 252 FGHACNVCDRLWFLEDLKCGSADEEILLKRITVK*SHSSIIYNYLISYQL*LYDIF-QNF 428
           FGH   VC  L +++D   G   +  +    T+K S + I    L  +QL L  +  Q  
Sbjct: 161 FGHIFTVCRTLIYIDDNVKGLGKQYNIASSKTLKLSINIISLVQLWIFQLYLLILCDQIL 220

Query: 429 TDVTQVMMCKTSRASIL 479
            +  Q+++  +   SIL
Sbjct: 221 REFDQIVVILSKVKSIL 237


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 614 NLRICIKRKPW 582
           NL +CI ++PW
Sbjct: 324 NLSVCIDQQPW 334


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 66  LVC*LMKWKFYNQPRNEFI 122
           +VC +  W FY +   +F+
Sbjct: 639 VVCYMTNWAFYRKAEGKFV 657


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 247 FCRIFFLNSLCADF 206
           F  IFF  ++C DF
Sbjct: 71  FTHIFFFFAICCDF 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,870
Number of Sequences: 336
Number of extensions: 3075
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)