BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1054 (627 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.3 SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 27 2.2 SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 2.9 SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 2.9 SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 26 3.9 SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 26 3.9 SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 26 3.9 SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 6.8 SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit... 25 9.0 SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.0 >SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 387 Score = 27.9 bits (59), Expect = 1.3 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 184 HTVAIKLKNQHISYLKKRSYRIPLVTPVMFVIVYGF*KILNV 309 H + I L N+H + ++ LV+PV F Y F IL++ Sbjct: 61 HLLQIPLSNRHTDLEENTEFKANLVSPVDFHAGYCFAAILSI 102 >SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces pombe|chr 2|||Manual Length = 350 Score = 27.1 bits (57), Expect = 2.2 Identities = 16/63 (25%), Positives = 34/63 (53%) Frame = +3 Query: 99 NQPRNEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCD 278 ++P +++ +N+ ++ ++ N+ Y Y + K+++ LF +QN G NVC Sbjct: 71 SEPSQLNVQSIENMIVTTKAGQTENALSKYLPYLS-KNSNILF----VQNGMGAVENVCG 125 Query: 279 RLW 287 +LW Sbjct: 126 KLW 128 >SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1583 Score = 26.6 bits (56), Expect = 2.9 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 217 ISYLKKRSYRIPLVTPVMFVIVYGF*KILNVDQQMKKSYLN 339 ++ L K ++ IPL V+ IVY F K+ +D K N Sbjct: 397 LNILSKVAHEIPLSEAVVIRIVYLFPKVSTLDNSFKTKLPN 437 >SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1183 Score = 26.6 bits (56), Expect = 2.9 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +3 Query: 114 EFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGH 260 EF E+ DN + + T+EP++ ++ + L ++ LQ SFGH Sbjct: 242 EFSEDSDNSSEENKDTNEPSTKDAEKT--VPEDVVNLRSEQKLQPSFGH 288 >SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 2|||Manual Length = 262 Score = 26.2 bits (55), Expect = 3.9 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%) Frame = +3 Query: 405 LYDIFQNFT------DVTQVMMCKTSRASILKGNIPFLATYNG--FKYP 527 +YDI FT + + +CK R + +PFL T++G +YP Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150 >SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 2|||Manual Length = 262 Score = 26.2 bits (55), Expect = 3.9 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%) Frame = +3 Query: 405 LYDIFQNFT------DVTQVMMCKTSRASILKGNIPFLATYNG--FKYP 527 +YDI FT + + +CK R + +PFL T++G +YP Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150 >SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 1|||Manual Length = 262 Score = 26.2 bits (55), Expect = 3.9 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%) Frame = +3 Query: 405 LYDIFQNFT------DVTQVMMCKTSRASILKGNIPFLATYNG--FKYP 527 +YDI FT + + +CK R + +PFL T++G +YP Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150 >SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1|Schizosaccharomyces pombe|chr 2|||Manual Length = 920 Score = 25.4 bits (53), Expect = 6.8 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = +2 Query: 5 QTRNLNFDEICQLPSQPILTPRLLTNEMEILQPAEE*IH 121 +T +L+F E+ + ++TP N+ E+LQ +H Sbjct: 244 ETSHLSFKEVLSSTTANMITPLAEKNKTEVLQVTPSKLH 282 >SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit Arc21|Schizosaccharomyces pombe|chr 2|||Manual Length = 174 Score = 25.0 bits (52), Expect = 9.0 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +3 Query: 483 GNIPFLATYNGFKYPQRPVDLPELDIIAE 569 GNI L F+ P P D ++DII E Sbjct: 18 GNIAMLPLKTKFRGPAYPADESQMDIIDE 46 >SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |Schizosaccharomyces pombe|chr 1|||Manual Length = 672 Score = 25.0 bits (52), Expect = 9.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 513 GFKYPQRPVDLPELDIIAERLILPRLPF 596 G KY VD+ L II L++ RLPF Sbjct: 198 GHKYIGECVDIWSLGIIMYALLIGRLPF 225 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,637,268 Number of Sequences: 5004 Number of extensions: 53787 Number of successful extensions: 125 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 125 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 277683324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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