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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1054
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.3  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    27   2.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   2.9  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.9  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    26   3.9  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    26   3.9  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   3.9  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   6.8  
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit...    25   9.0  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   9.0  

>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 184 HTVAIKLKNQHISYLKKRSYRIPLVTPVMFVIVYGF*KILNV 309
           H + I L N+H    +   ++  LV+PV F   Y F  IL++
Sbjct: 61  HLLQIPLSNRHTDLEENTEFKANLVSPVDFHAGYCFAAILSI 102


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +3

Query: 99  NQPRNEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCD 278
           ++P    +++ +N+ ++ ++    N+   Y  Y + K+++ LF    +QN  G   NVC 
Sbjct: 71  SEPSQLNVQSIENMIVTTKAGQTENALSKYLPYLS-KNSNILF----VQNGMGAVENVCG 125

Query: 279 RLW 287
           +LW
Sbjct: 126 KLW 128


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 217 ISYLKKRSYRIPLVTPVMFVIVYGF*KILNVDQQMKKSYLN 339
           ++ L K ++ IPL   V+  IVY F K+  +D   K    N
Sbjct: 397 LNILSKVAHEIPLSEAVVIRIVYLFPKVSTLDNSFKTKLPN 437


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 114 EFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGH 260
           EF E+ DN +   + T+EP++    ++    +    L  ++ LQ SFGH
Sbjct: 242 EFSEDSDNSSEENKDTNEPSTKDAEKT--VPEDVVNLRSEQKLQPSFGH 288


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = +3

Query: 405 LYDIFQNFT------DVTQVMMCKTSRASILKGNIPFLATYNG--FKYP 527
           +YDI   FT      +  +  +CK  R  +    +PFL T++G   +YP
Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = +3

Query: 405 LYDIFQNFT------DVTQVMMCKTSRASILKGNIPFLATYNG--FKYP 527
           +YDI   FT      +  +  +CK  R  +    +PFL T++G   +YP
Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = +3

Query: 405 LYDIFQNFT------DVTQVMMCKTSRASILKGNIPFLATYNG--FKYP 527
           +YDI   FT      +  +  +CK  R  +    +PFL T++G   +YP
Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 5   QTRNLNFDEICQLPSQPILTPRLLTNEMEILQPAEE*IH 121
           +T +L+F E+    +  ++TP    N+ E+LQ     +H
Sbjct: 244 ETSHLSFKEVLSSTTANMITPLAEKNKTEVLQVTPSKLH 282


>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
           Arc21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 483 GNIPFLATYNGFKYPQRPVDLPELDIIAE 569
           GNI  L     F+ P  P D  ++DII E
Sbjct: 18  GNIAMLPLKTKFRGPAYPADESQMDIIDE 46


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 513 GFKYPQRPVDLPELDIIAERLILPRLPF 596
           G KY    VD+  L II   L++ RLPF
Sbjct: 198 GHKYIGECVDIWSLGIIMYALLIGRLPF 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,268
Number of Sequences: 5004
Number of extensions: 53787
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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