Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1054
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.3
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 27 2.2
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 2.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 2.9
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 26 3.9
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 26 3.9
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 26 3.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 6.8
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit... 25 9.0
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.0
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 184 HTVAIKLKNQHISYLKKRSYRIPLVTPVMFVIVYGF*KILNV 309
H + I L N+H + ++ LV+PV F Y F IL++
Sbjct: 61 HLLQIPLSNRHTDLEENTEFKANLVSPVDFHAGYCFAAILSI 102
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 99 NQPRNEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCD 278
++P +++ +N+ ++ ++ N+ Y Y + K+++ LF +QN G NVC
Sbjct: 71 SEPSQLNVQSIENMIVTTKAGQTENALSKYLPYLS-KNSNILF----VQNGMGAVENVCG 125
Query: 279 RLW 287
+LW
Sbjct: 126 KLW 128
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 217 ISYLKKRSYRIPLVTPVMFVIVYGF*KILNVDQQMKKSYLN 339
++ L K ++ IPL V+ IVY F K+ +D K N
Sbjct: 397 LNILSKVAHEIPLSEAVVIRIVYLFPKVSTLDNSFKTKLPN 437
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 114 EFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGH 260
EF E+ DN + + T+EP++ ++ + L ++ LQ SFGH
Sbjct: 242 EFSEDSDNSSEENKDTNEPSTKDAEKT--VPEDVVNLRSEQKLQPSFGH 288
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = +3
Query: 405 LYDIFQNFT------DVTQVMMCKTSRASILKGNIPFLATYNG--FKYP 527
+YDI FT + + +CK R + +PFL T++G +YP
Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = +3
Query: 405 LYDIFQNFT------DVTQVMMCKTSRASILKGNIPFLATYNG--FKYP 527
+YDI FT + + +CK R + +PFL T++G +YP
Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = +3
Query: 405 LYDIFQNFT------DVTQVMMCKTSRASILKGNIPFLATYNG--FKYP 527
+YDI FT + + +CK R + +PFL T++G +YP
Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 5 QTRNLNFDEICQLPSQPILTPRLLTNEMEILQPAEE*IH 121
+T +L+F E+ + ++TP N+ E+LQ +H
Sbjct: 244 ETSHLSFKEVLSSTTANMITPLAEKNKTEVLQVTPSKLH 282
>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
Arc21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 483 GNIPFLATYNGFKYPQRPVDLPELDIIAE 569
GNI L F+ P P D ++DII E
Sbjct: 18 GNIAMLPLKTKFRGPAYPADESQMDIIDE 46
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 513 GFKYPQRPVDLPELDIIAERLILPRLPF 596
G KY VD+ L II L++ RLPF
Sbjct: 198 GHKYIGECVDIWSLGIIMYALLIGRLPF 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,268
Number of Sequences: 5004
Number of extensions: 53787
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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