Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1054
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428...    31   0.57 
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    29   4.0  
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914...    27   9.2  

>07_01_0577 -
           4286048-4286186,4286600-4286660,4286957-4287089,
           4287286-4287350,4288346-4288451,4288529-4288750,
           4289619-4289852,4289948-4290037,4290605-4291507
          Length = 650

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +3

Query: 84  KWK---FYNQPRNEFIENEDNINMSEESTSEP-NSSLPYRSYQTQKSAHKLFKKKILQNS 251
           KWK      Q +   IEN D++ +  +S +   N    +   +T + A   +KK   +N+
Sbjct: 326 KWKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNA 385

Query: 252 FGHACNV 272
           FG   N+
Sbjct: 386 FGKGLNI 392


>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 99  NQPRNEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHA-CNVC 275
           + P +E      ++  S  S+S+P +S PY + +T  +    FKK+  +++F H+  NV 
Sbjct: 214 SSPESETAFGSTDVGTSSVSSSDPGTS-PYSASETNST----FKKEATKDNFQHSDVNVS 268

Query: 276 D 278
           D
Sbjct: 269 D 269


>05_07_0004 +
           26990250-26990516,26990877-26990931,26991286-26991461,
           26991702-26991923,26992001-26992239,26992437-26992962,
           26993042-26993315,26993391-26994009,26994082-26994121,
           26994263-26994310,26994548-26994814,26994892-26995155,
           26995260-26995904
          Length = 1213

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 355 YFTVIRLSKISSSADPHLRSSKNHKRSQTLQ 263
           Y  +IRL +   + DPHL    N KRSQ+L+
Sbjct: 600 YSQLIRLQEAQQAIDPHLDGPLN-KRSQSLK 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,297,576
Number of Sequences: 37544
Number of extensions: 283780
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)