Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1054
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23112| Best HMM Match : Dickkopf_N (HMM E-Value=2.6)                39   0.004
SB_3007| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_29191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_23112| Best HMM Match : Dickkopf_N (HMM E-Value=2.6)
          Length = 249

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +3

Query: 450 MCKTSRASILKGNIPFLATYNGFKYPQRPVDLPELDIIAERLILPRLPF 596
           +C T  ++I    +P  A  NG  +P++P  L +L  + ERLI PR+PF
Sbjct: 131 ICNTCHSNIKNKKLPQCAKANGMCFPEKPKVL-DLTPLEERLISPRIPF 178


>SB_3007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 450 MCKTSRASILKGNIPFLATYNGFKYPQRP--VDLPELDIIAERLILPRLPF 596
           +C+T    + K  +P  A  NG  +P +P   DL EL+    RL+ PR+ F
Sbjct: 84  VCRTCSNYLQKNKVPPCAVANGMAFPDKPYFFDLNELEC---RLLAPRIAF 131


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 138 INMSEESTSEPNSSLPYRSYQTQKSA 215
           IN+ E   SE  S  PY SYQ   SA
Sbjct: 309 INIKENPLSEEESGAPYHSYQVPLSA 334


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 78  LMKWKFYNQPR-NEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSF 254
           L  W F +    +EF +  +  N+   S S+  + +      TQ  AHK   K+ L+N F
Sbjct: 427 LADWDFLDSVTVDEFSQIANMTNLLSGSVSDLIAQMKTNGLSTQIPAHKTITKQFLENVF 486


>SB_29191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +1

Query: 115 NSLKMKTISTCLKSQHRSQILACHTVAIKLKNQHISYLKKRSYRIPLVTPVMFVIVYGF* 294
           +SLK    S   K++     LA  T AIK +N+ ++   K  ++  +V PV  + V G+ 
Sbjct: 266 SSLKKMQTSLITKAKELQYSLATTTPAIKARNKKVN--SKTLHKAGIVVPVNAMDV-GYR 322

Query: 295 KILNVDQQMKK 327
            +   D ++KK
Sbjct: 323 PLTVTDAELKK 333


>SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 103 SRGMNSLKMKTISTCLKSQHRSQILACHTVAIKLKNQHISYLKKRSYRI 249
           S GM   +  + S CL      ++ ACH ++++++  H+  L+ R+  +
Sbjct: 762 SNGMLITRALSPSACLSRALSLRVRACHVLSLRVRACHVLSLRVRACHV 810


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,134,293
Number of Sequences: 59808
Number of extensions: 339518
Number of successful extensions: 757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)