Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1054
(627 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY358810-1|AAQ89170.1| 232|Homo sapiens macrophage antigen h pr... 33 0.83
AK128243-1|BAC87350.1| 232|Homo sapiens protein ( Homo sapiens ... 33 0.83
DQ368812-1|ABC96323.1| 276|Homo sapiens C-type lectin domain fa... 32 1.9
AK023181-1|BAB14450.1| 857|Homo sapiens protein ( Homo sapiens ... 30 5.8
BC041706-1|AAH41706.1| 1863|Homo sapiens DENN/MADD domain contai... 30 7.7
BC028057-1|AAH28057.1| 933|Homo sapiens DENND4A protein protein. 30 7.7
AL832602-1|CAD89960.1| 1831|Homo sapiens hypothetical protein pr... 30 7.7
AK091368-1|BAC03648.1| 928|Homo sapiens protein ( Homo sapiens ... 30 7.7
AF534403-1|AAQ10514.1| 1865|Homo sapiens c-MYC promoter-binding ... 30 7.7
>AY358810-1|AAQ89170.1| 232|Homo sapiens macrophage antigen h
protein.
Length = 232
Score = 33.1 bits (72), Expect = 0.83
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 126 NEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCDRLW 287
N +N++M EE SSL R Q A KL ++ I+ S H CN C ++W
Sbjct: 98 NSNNLSMEEEFLKSQISSLLKRQEQM---AIKLCQELIIHTS-DHRCNPCPKMW 147
>AK128243-1|BAC87350.1| 232|Homo sapiens protein ( Homo sapiens
cDNA FLJ46377 fis, clone TESTI4052598. ).
Length = 232
Score = 33.1 bits (72), Expect = 0.83
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 126 NEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCDRLW 287
N +N++M EE SSL R Q A KL ++ I+ S H CN C ++W
Sbjct: 98 NSNNLSMEEEFLKSQISSLLKRQEQM---AIKLCQELIIHTS-DHRCNPCPKMW 147
>DQ368812-1|ABC96323.1| 276|Homo sapiens C-type lectin domain
family 12 member B protein.
Length = 276
Score = 31.9 bits (69), Expect = 1.9
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 126 NEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCDRLW 287
N +N++M EE SS+ R Q A KL ++ I+ S H CN C ++W
Sbjct: 98 NSNNLSMEEEFLKSQISSVLKRQEQM---AIKLCQELIIHTS-DHRCNPCPKMW 147
>AK023181-1|BAB14450.1| 857|Homo sapiens protein ( Homo sapiens
cDNA FLJ13119 fis, clone NT2RP3002671, weakly similar to
ELONGATION FACTOR 2. ).
Length = 857
Score = 30.3 bits (65), Expect = 5.8
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 123 ENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKL--FKKKILQNSFGHAC-NVCDRLWFL 293
EN D I E+ TS N QK+ K+ FK K+ Q+ G N+ D++W
Sbjct: 505 ENSDLIRSMEQLTSSLNEGENTHMIH-QKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSF 563
Query: 294 EDLKCG 311
KCG
Sbjct: 564 GPRKCG 569
>BC041706-1|AAH41706.1| 1863|Homo sapiens DENN/MADD domain
containing 4A protein.
Length = 1863
Score = 29.9 bits (64), Expect = 7.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 141 NMSEESTSEPNSSLPY--RSYQTQKSAHKLFKKKILQNSFGHACNV--CDRLWFL 293
N +S PNS LP R+ Q KSAHK+ K+ C + C LWF+
Sbjct: 720 NKLPSKSSSPNSPLPMFRRTKQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFI 774
>BC028057-1|AAH28057.1| 933|Homo sapiens DENND4A protein protein.
Length = 933
Score = 29.9 bits (64), Expect = 7.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 141 NMSEESTSEPNSSLPY--RSYQTQKSAHKLFKKKILQNSFGHACNV--CDRLWFL 293
N +S PNS LP R+ Q KSAHK+ K+ C + C LWF+
Sbjct: 720 NKLPSKSSSPNSPLPMFRRTKQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFI 774
>AL832602-1|CAD89960.1| 1831|Homo sapiens hypothetical protein
protein.
Length = 1831
Score = 29.9 bits (64), Expect = 7.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 141 NMSEESTSEPNSSLPY--RSYQTQKSAHKLFKKKILQNSFGHACNV--CDRLWFL 293
N +S PNS LP R+ Q KSAHK+ K+ C + C LWF+
Sbjct: 688 NKLPSKSSSPNSPLPMFRRTKQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFI 742
>AK091368-1|BAC03648.1| 928|Homo sapiens protein ( Homo sapiens
cDNA FLJ34049 fis, clone FCBBF3000110, weakly similar to
CRAG protein. ).
Length = 928
Score = 29.9 bits (64), Expect = 7.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 141 NMSEESTSEPNSSLPY--RSYQTQKSAHKLFKKKILQNSFGHACNV--CDRLWFL 293
N +S PNS LP R+ Q KSAHK+ K+ C + C LWF+
Sbjct: 720 NKLPSKSSSPNSPLPMFRRTKQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFI 774
>AF534403-1|AAQ10514.1| 1865|Homo sapiens c-MYC promoter-binding
protein IRLB protein.
Length = 1865
Score = 29.9 bits (64), Expect = 7.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 141 NMSEESTSEPNSSLPY--RSYQTQKSAHKLFKKKILQNSFGHACNV--CDRLWFL 293
N +S PNS LP R+ Q KSAHK+ K+ C + C LWF+
Sbjct: 720 NKLPSKSSSPNSPLPMFRRTKQEIKSAHKIAKRYSSIPQMWSRCLLRHCYGLWFI 774
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,474,693
Number of Sequences: 237096
Number of extensions: 1566687
Number of successful extensions: 6661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6661
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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