Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1054
         (627 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022147-1|AAY51542.1|  236|Drosophila melanogaster IP01435p pro...    33   0.24 
AE014298-1853|AAF48233.1|  232|Drosophila melanogaster CG4318-PA...    33   0.24 
AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA...    31   1.7  
BT001896-1|AAN71685.1| 1285|Drosophila melanogaster SD19050p pro...    29   5.1  
AY058498-1|AAL13727.1|  558|Drosophila melanogaster LD03886p pro...    29   5.1  
AE014296-1091|AAF50680.1| 1270|Drosophila melanogaster CG7376-PA...    29   5.1  
AY113649-1|AAM29654.1|  701|Drosophila melanogaster SD12335p pro...    29   6.8  
AE014296-828|AAN11599.1| 1465|Drosophila melanogaster CG32251-PA...    29   6.8  

>BT022147-1|AAY51542.1|  236|Drosophila melanogaster IP01435p
           protein.
          Length = 236

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 168 PNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCDRLWFL-EDLKC 308
           PNS+       +Q SA K  KKK+L+ +  H CN+C + + L   LKC
Sbjct: 125 PNSNSNGNGNVSQSSAQKDTKKKMLKKT--HKCNICGKYFMLPAHLKC 170


>AE014298-1853|AAF48233.1|  232|Drosophila melanogaster CG4318-PA
           protein.
          Length = 232

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 168 PNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCDRLWFL-EDLKC 308
           PNS+       +Q SA K  KKK+L+ +  H CN+C + + L   LKC
Sbjct: 121 PNSNSNGNGNVSQSSAQKDTKKKMLKKT--HKCNICGKYFMLPAHLKC 166


>AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA
            protein.
          Length = 1399

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 108  RNEFIENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACN 269
            R E ++N D+   S++ST +PN  LP         AH        Q S  H+ N
Sbjct: 1100 RREHLQNSDSNANSQQSTPQPNQQLPTERPHPLAQAHPHPHPHQHQRSHSHSHN 1153


>BT001896-1|AAN71685.1| 1285|Drosophila melanogaster SD19050p protein.
          Length = 1285

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 159  TSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCDRLWFLEDLKCGSADE 323
            T +P     YR    Q      F +  LQ S  +   +C RL +L+ LK  SAD+
Sbjct: 996  TDDPEEQSNYRILACQLDEQLQFNQYNLQTSQLNFTRLCGRLKYLKHLKEDSADK 1050


>AY058498-1|AAL13727.1|  558|Drosophila melanogaster LD03886p
           protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 159 TSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCDRLWFLEDLKCGSADE 323
           T +P     YR    Q      F +  LQ S  +   +C RL +L+ LK  SAD+
Sbjct: 269 TDDPEEQSNYRILACQLDEQLQFNQYNLQTSQLNFTRLCGRLKYLKHLKEDSADK 323


>AE014296-1091|AAF50680.1| 1270|Drosophila melanogaster CG7376-PA
            protein.
          Length = 1270

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 159  TSEPNSSLPYRSYQTQKSAHKLFKKKILQNSFGHACNVCDRLWFLEDLKCGSADE 323
            T +P     YR    Q      F +  LQ S  +   +C RL +L+ LK  SAD+
Sbjct: 981  TDDPEEQSNYRILACQLDEQLQFNQYNLQTSQLNFTRLCGRLKYLKHLKEDSADK 1035


>AY113649-1|AAM29654.1|  701|Drosophila melanogaster SD12335p
           protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 123 ENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLF 227
           +N D  ++    T +P++  P  + Q Q SAHKLF
Sbjct: 197 DNSDEDDLDLLQTPKPSNVAPITATQLQLSAHKLF 231


>AE014296-828|AAN11599.1| 1465|Drosophila melanogaster CG32251-PA
            protein.
          Length = 1465

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 123  ENEDNINMSEESTSEPNSSLPYRSYQTQKSAHKLF 227
            +N D  ++    T +P++  P  + Q Q SAHKLF
Sbjct: 961  DNSDEDDLDLLQTPKPSNVAPITATQLQLSAHKLF 995


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,367,877
Number of Sequences: 53049
Number of extensions: 510592
Number of successful extensions: 1262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)